LOC110515809 (LOC106592244)


Basic Information

Item Value
gene id LOC110515809
gene name LOC106592244
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9464081 ~ 9480516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956800.1
ttcctcatctcttctccttacATCACCTAatttcactcctcctcctcctcctcaacagtGACTAATTCAAGCCAGAAGCAGTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGATGGCTCTGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTGGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGTCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACAAActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGGAGACAAGATCTGGTTTAGCAGTAATTCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGACAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCATCCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAGTGATGTATTTATTTATGACATGTTTATCTTGTTTTGAAATCAGTCGGGGATT
>XM_036956799.1
TACCTCATCAtttcctcatctcttctccttacATCACCTAatttcactcctcctcctcctcctcaacagtGACTAATTCAAGCCAGAAGCAGTAGCCAGCTCAGGTACTCTCAACATTCTCTGATTCTGAGCTACACTACCAAGACcaagctgctactactactgtcactgtGTTTCTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTGTAGTGATGGCTCTGCACCTCTCAACAGGGCTGGATGCTGCCCCGGGGGTGGTGAACActacagaggaggaggtggaaggcgTGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTACCCCGTCTGGGCCACCTGGGCcactgcagagtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGTCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATGGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACAAActggagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGGAGACAAGATCTGGTTTAGCAGTAATTCCAAGTCAGAAGAAATCACACGAGAGAGagcTGGTTAAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccCCTGGCTAAgcctcttcccctgcccctgctACCAGTGGGGGGGTGAGGACATGAAGCCAGACCAGAGGAACCAGAAGGACAAGACAGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAGGCTCTCTTCACCTCCAGCTGGTTTCCCACTGgtgacgaggaggaagaggaggaccaacCCATCCTGTTGTCTGTGGAGTCTGGTCCTGACGTTAGGGTGAGTGATGTATTTATTTATGACATGTTTATCTTGTTTTGAAATCAGTCGGGGATT
>TU1953431
TGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCTACTCAGCCTTCCTCAGAGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCATCCCCATGCTGCGGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCAGAGAACACATCAACGCTACCAGGAGTCTCTGAAGGAGGCCCAGAACCAAACTCCACCACACCTGAACCTGTCCTCAATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGACATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACCAggccccagcccctgcctctaccC

Function

NR:

description
uncharacterized protein LOC110510817

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956800.1 False 1477 mRNA 0.54 12 9464081 9480505
XM_036956799.1 False 1573 mRNA 0.54 12 9464081 9480516
TU1953431 True 449 TUCP 0.57 3 9468623 9474354

Neighbor

gene id symbol gene type direction distance location
LOC118936574 LOC106592244 coding downstream 84206 9371753 ~ 9379875 (-)
LOC118942865 LOC106593190 coding downstream 186933 9261999 ~ 9277148 (-)
LOC110512574 LOC107758139 coding downstream 259405 9111713 ~ 9204676 (-)
LOC118942995 NA coding downstream 352642 9106908 ~ 9111439 (-)
LOC118942864 NA coding downstream 359465 9100061 ~ 9104616 (-)
LOC110507938 LOC106591072 coding upstream 7065 9487581 ~ 9508460 (-)
LOC110510472 LOC108426397 coding upstream 262322 9742838 ~ 9791396 (-)
LOC110490693 il17r coding upstream 395159 9875675 ~ 9893829 (-)
LOC118936576 LOC106609822 coding upstream 430566 9911082 ~ 9926166 (-)
LOC118942869 arhgef39 coding upstream 476389 9956905 ~ 10061152 (-)
G1705790 LOC106592244 non-coding downstream 53699 9349427 ~ 9410382 (-)
G1705773 NA non-coding downstream 131316 9299002 ~ 9332765 (-)
G1705778 NA non-coding downstream 137696 9325525 ~ 9326385 (-)
G1705777 NA non-coding downstream 149974 9306595 ~ 9314107 (-)
G1705780 NA non-coding downstream 150826 9312258 ~ 9313255 (-)
G1705858 NA non-coding upstream 35937 9516453 ~ 9516783 (-)
G1705859 NA non-coding upstream 38142 9518658 ~ 9519756 (-)
G1705861 NA non-coding upstream 40223 9520739 ~ 9521019 (-)
G1705942 NA non-coding upstream 50796 9531312 ~ 9531605 (-)
G1705946 NA non-coding upstream 60598 9541114 ~ 9541626 (-)
LOC118942856 crbl2 other downstream 655157 8805889 ~ 8808961 (-)
G1705386 NA other downstream 931278 8531735 ~ 8532803 (-)
pthlha NA other downstream 1417199 8024974 ~ 8047016 (-)
G1705975 NA other upstream 161434 9641950 ~ 9642941 (-)
G1706990 NA other upstream 879908 10360424 ~ 10360975 (-)
G1706993 NA other upstream 887368 10367884 ~ 10368439 (-)
G1707057 NA other upstream 1050101 10530617 ~ 10531271 (-)
LOC110499727 LOC106609821 other upstream 1340408 10796557 ~ 10897355 (-)
G1705840 NA non-coding downstream 4014 9464331 ~ 9464609 (-)

Expression


Co-expression Network