LOC118942866 (LOC106576670)


Basic Information

Item Value
gene id LOC118942866
gene name LOC106576670
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9532104 ~ 9722986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956805.1
CACGACAAAACATCACTGAACACCCAGCAAGCATAACGTGTAATTTTTGGGGAGATTACATTGTAGCGTGGCCTGTTACAGAATAGCCTACAACAAGAGCAATGGCATGCTCTTGTAAACATCCGAGCTCATGCTAAAAGTGGGATCTCACGATTGTTCAGGCTAATAATATTCCTTGTTTCTCTGGTTTTGTAGGTTTTCGACTCGAACTGAAACGCTTTtgggggaagaaaaaaaactctGTGTTCTGCGTGGACGTTTGTTCCTGTCTCGCCCCATTCCGCCTAATCGCAGCAGATGGAGGGTTGCTGAGAGCCGGGGAGTGAGATCAGCATCTTTTCACTCGTTGAGGCAGCATCCGAACAGCTGCAgctgctcgctccctctctccagatCACTCTCTCCCGTACGCAGGAAAGAGCGAAACGGAACTCTATTTTACAGCAAGGACCTTGCCTTATTCGGTAGATTCAACGAATTTTATGATTTGCAACCTAGACTTAAATTCTATTTGCTCATGGTTGTAACCTCGATGATGGTCTTGCTATCGGCGCCAAGGGGAGATGTAAACTGATTCGTTGGAGGTGGGTTGTAGCCGTAGCAGCGCTGTGCTGACTGACAAAGCGACAGACCGAcagagcgaggagaggagagcagaggagctgTCCATAGGCTGGTGGTGCTGATGCGGCGGCTCTGAGAAAAGCAGAGAAACCGAGCATGGCTGCAGGGAAGTTACTGCTCTACGCCggcctgtccctctctctgtgcgcCCTAGGAATGCTCGCAGTGGCGATCTGTTCCGACCACTGGTACGAGACTGACGCGCGGAGGTATCGGGAGCGCTGTCGGAGTTTCTCCAGCCGTAAGAACCCAGGCTTTATCTACATCCCCAACAACAGCCTCCCTCTGCGGGCTAGCCGCTCCAGACTGGACCGCTGGGAGGACAAGCTGCTCCTAGCCCGGAACAGAAGGCAGCTGTTCGCTATGTCCGCCGCGGACGAGTGTAGCAGGCAGTACAACTCCACCAACATGGGACTGTGGAGCAAATGTCACCGACTGGGCTTCGACCAGGACACAGAAGACCTCATTCGCAAAGgtTCCATTGCCAGATGTTCCTACatcaaataccactactcttcAGCAACGATACCCAAGAACCTCTCGTATAACATCACGAAGACCATACGACAGGATGAGTGGCACTCTTTGCaCCTGCGGCGGATGACGGCAGGCTTCATGGGCATGGCTGTAGCCATCATTCTGTTTGGCTGGACGATAGGTGTTCTGGGATGCTGCTGGGATAGAGGACTGATGCAGTACGTGGCAGGATTACTGTTCCTCATGGGAGgcACCTTCTGTATAATCTCTCTCTGTACCTGCGTGGCGGGGATCAACTTCGAGCTGTCCCGTTATCCTCGCTATCTGTACGGCCTGCCGGACGACATCGGCCACGGCTACGGCTGGTCTATGTTCTGCGCCTGGGGAGGTCTGGGGCTCACCCTCATCGCTGGTTTCTTCTGTACCCTGGCTCCCTCCGTCCAGCCCATCCCTCGATCCACCTGCCCCAAGTCGAGGCAGGAGAACGGGACGGTCTGCTAGAGGGACtgggatggaggatagagggactggaggtCCAGTTCCTAGATAGATAGCTGACTACACCTTTAACCACACAGGACAGCCGTAACAAAAGAGAAtttaacaaacaaaaatgtaacaaTGAGTTGACAAATCAATGCATTCATTTAATTAATCATTTTCCACTTAAAGacaatgttttgttttttctttgtttaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaacatGATCTGGTTTCTTGAAAaacaattgattttttttttttacacgaaCTGACAGAAAAATCTAGTCATCGATCTGAAGTTGTGCTGGGGGGGGGTTGTAGTCGGGGATGTTGTGATGCTTGAAATGGATGTACCATGAAACGGCCTTCTCTACTGGGGGGAACGAGAGGAACCTTTCAGTAATGAACGATGACAGGCGATGACAGACAACAAGGGATGGGAGTGACAAGAACAACAGCCTGAACCTCAGAGGAACTAACTCATCATGGTGACCAGCCTCCACAACAAGGAGAATAACTGAAACTCTGTtgttgctgaggggaggacggctcatcatAATGGCTTGAACGGCgcaaatggaacggtatcaaacacgtggaaaccatggaaaccaaacCATGGAAACCAAACCATTCAAACAAATGATAACCATGGAAACCAAACCattcaaacacatggaaaccatggaaaccaaaccattcaaacacatggaaaccaagcCATTCAAACACATGGAGACCATGGAAACCAAACCATTCAAACACattgaaaccatggaaaccaaacCATTCAAACACattgaaaccatggaaaccaaacCATTCAAACACattgaaaccatggaaaccaaacCATTCAAACACATGgagaccatgtgtttgataccattccacctatttcCTCTCAAGCCatttaccacgagcccgtcctccccaattgaggtgccaccaacctcctgtgtcgAAGAGGGTTAAATCAACACTAACTGAAAGGGGTCAAAGGTTGGAGTATTATAAACAGCACATCCTGTTCTAAAGAGACACCTCAGCTTGTTGGAGACTTCCGATTGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGGCTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGGCTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGACTAGCTGTGTGTTCCTCAGATCTACTCTGGGTCATTGGACTAGCTGTGGGAGAAGAATGGCACATCACACGATACAGGCTCTCTAGAGTATCTCTACTGTTGTACAAAACTACCGAATCATCATTCCAGAGAAATTACAGCCAGGAAATGCCATGTTGGAGCATTGTCATGCCCACCGGGGGCATactagtttgcatcccaaatggcccccttttccctctggtccctagtcaacagtagtacagtacACTGGATAGGGAAATAGGTTGCCAatcgtcccaaatggctccctttcccctctggtccctagtcaacagtagtgcactggacagggaataggatgccaatGGAGACACATACCTATTTCTTCAAGCCCCGTCTATCCTCAGTCATCTAACATTTTATACATTCATTCACTCTCTTTGTATCGTCCTGAAACCCATCCTGAATGAAGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGAAACTGTGTGTTGTCCTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGGAACTGTGTGTAGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGGGACTGTGTGTAGTACTGAAACCCATCCTGAATGAAGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGCAGGAAACTGTGTGTAGTACTGAAACCCATCCTGAATGCAGGAAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGGGACTGTGTGTTGTACTGAAACCCATCCTGAATGACGGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGGAACTGTATGTTGTACTGAAACCCATCCTGAATGAGGGAACTGTATGTTGTACTGAAACCCATCCTGAATGAGGGGACTGTGTGTAGTACTGAAACCCATCCTGAATGAAGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAGGGGACTGTGTGTAGTACTGAAACCCATCCTGAATGCAGGAAACTGTGGGTAGTACTGAAACCAATCCTGAATGCAGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGAAACTGTGTGTAGTACTGAAACCCATCCTGAATGAGGGGACTGTGTGTAGTACTGAAACCCATCCTGAATGCAGGAAACTGTGGGTAGTACTGAAACCCATCCTGAATGCAGGAACTGTGTGTTGTACTGAAACCCATCCTGAATGAAGGAAACTGTGTGTAGTACTGAAACCCATCCTGAATGAAGGAAACTGTGGGTAGTACTGAAACCAATCCTGAATGAAGGAACTGTGTGTTGTACTAGTACTTTAAACAATATTACCCTGGTTCTGTCCTGTCATCTGTTGTTTGGGAGGACAATATTACCCTGGTTCTGTTCTGTCACCTGTTTAAACAATATTACCCTGGTTCTGTCCTGTCATCTGTTTGGGAGGACAATATTACCCTGGTTCTGTTCTGTCACCTGTTTAAACAATATTACCCTGGTTCTGTCCTGTCATCTGTTTGGGAGGACAATATTACCCTGGTTCTGTTCTGTCACCTGTTTAAACAATATTACCCTGGTTCTGTCCTGTCATCTGTTT

Function

NR:

description
PREDICTED: transmembrane protein 178B

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956805.1 True 5063 mRNA 0.47 4 9532104 9722986

Neighbor

gene id symbol gene type direction distance location
LOC118936575 LOC106592244 coding upstream 118933 9402494 ~ 9413171 (+)
LOC118943004 LOC106591072 coding upstream 141062 9387717 ~ 9391585 (+)
LOC110507941 LOC106592244 coding upstream 177632 9336881 ~ 9354472 (+)
zgc:194209 LOC106591857 coding upstream 290765 9217225 ~ 9241339 (+)
LOC118942859 NA coding upstream 447546 9082796 ~ 9084558 (+)
LOC118942867 NA coding downstream 46604 9769444 ~ 9771487 (+)
LOC118942868 mkrn1 coding downstream 101864 9824762 ~ 9864743 (+)
LOC110516560 LOC106576660 coding downstream 145416 9868402 ~ 9870589 (+)
LOC118942870 NA coding downstream 257809 9980795 ~ 9981137 (+)
LOC118942996 NA coding downstream 347490 10070476 ~ 10098024 (+)
G1705863 NA non-coding upstream 2671 9522059 ~ 9529433 (+)
G1705728 NA non-coding upstream 60791 9469313 ~ 9471313 (+)
G1705645 NA non-coding upstream 198966 9299002 ~ 9333138 (+)
G1705650 NA non-coding upstream 210330 9315597 ~ 9321774 (+)
G1706009 NA non-coding downstream 18912 9741898 ~ 9743489 (+)
G1706010 NA non-coding downstream 21689 9744675 ~ 9746142 (+)
G1706027 NA non-coding downstream 52764 9775750 ~ 9776626 (+)
G1706031 NA non-coding downstream 61337 9784323 ~ 9800209 (+)
eps8a LOC106594571 other upstream 440699 8908286 ~ 9091490 (+)
G1705279 NA other upstream 518941 9011926 ~ 9013163 (+)
G1705267 NA other upstream 555539 8975304 ~ 8976565 (+)
G1705229 NA other upstream 680997 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 970892 8538928 ~ 8564807 (+)
G1706013 NA other downstream 25199 9748185 ~ 9753473 (+)
G1706090 NA other downstream 192727 9915713 ~ 9918019 (+)
G1706152 NA other downstream 411402 10134388 ~ 10135384 (+)
LOC110531908 LOC106594049 other downstream 1386442 11103180 ~ 11138813 (+)
G1706652 NA other downstream 1547743 11270729 ~ 11272473 (+)

Expression


Co-expression Network