LOC118942868 (mkrn1)


Basic Information

Item Value
gene id LOC118942868
gene name mkrn1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9824762 ~ 9864743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956808.1
GCAGCAGCGTCGATTTTCCGAAGATTCCCGATTCGGAGCTCGACTTTCCGGAAGATCCGGGTACTCGGCTTCATTACATTACAGGTCACATGAAGAGAAACAACAGCAGCAGCGTCGATTTTCCGAAGATCCCCGATTCGGAGCTCGACTTTCCGGGAAGATCCGGGTACTGGGCTTCAACCTCAACATAACAGCAATGGCGGAGGCAGCAGCTACAGCGGCTCCAGCAATACCAGGAGCCTGGACCAAACACGTCACCTGCAGGTATTTCATGCATGGGCTTTGCAAAGAAGGCATCAACTGTCGATATTCCCATGATCTCAACACCAGTCAACCAGCTGCAGCTATGATTTGCAAGTTCTTTCAGAAAGGAAACTGTGTGTTCGGCGACCGGTGCAGgtttGAACACTCTAAAGAAGACGTGCCTGGGCCCAAGCCGTCGCTGCCACCCCCTGCCTCCGCCCTTCTCACTCCTACGTCCCTCGCCGCCAGCGCCCCCGTTCCCAGTGGATCGGCGGGTGGTGAGTCGGCAGACGGCCCAGAGAACCCTCATGGATCAGGCGCAGGGGACTGGGTTATGGCGGCAGAGTTTGTACCAGGCCAGCCGTACTATTGTGGAAGGGACCCGGTGAAGTCTGAAGGGTCGGGGATGAGTCCTCTGATGGAGCGAAAGAAGGACCGGTCGGGAGACGATAAGGAGTTGAGGAAGACTCTGTGTCCCTACGCCGCCATGGGGGAGTGTCGCTACGGACTTAACTGTGCCTATCTCCACGGCGACGTGTGTGACATGTGCGGTCTGCAGGTGCTCCACCCCTCCAACGACGCACAGCGATCAGAACACACCAAGGCTTGCATCGAGGCCCATGAGAAGGACATGGAGCTGTCGTTTGCCATCCAGCGCAGTAAGGACATGCAGTGTGGCGTGTGTATGGAGGTGGTGTTTGACAAGGCCAACCCCAGTGAGAGACGCTTCGGCATCCTTTCCAACTGCTGCCACTGTTACTGCCTCAAGTGCATCCGCAAGTGGAGGAGCGCCAAGACGTTCGAGAGCAAGATCATCAAgtcCTGTCCAGAGTGTCGGATAACATCCAACTTCGTCATCCCCAGTGAGTACTGGGTGGAGGACAAGGAAGACAAGCAGAAACTGATACAGAAATACAAGGATGGCATGGGGACTAAAGCCTGTCGTTACTTCGACCAGGGTCGGGGCACCTGCCCGTTTGGCTCCAACTGCTTCTACAAACACGCCTTCCCTGACGGACGGCTGGAGGAGCCCCAGAGGAGACCTGCAGGGTGCAACGGCAGGAACAGGAACTCGAGGAGGACACCCCTGTGGGACCTGTTTGAAGAGCGGGAGAACAGCAGCGACTCTTTGGACAACGAGGACGAGGAGATGGTGACCTTTGAACTGAGCGAGATGCTCCTCATGCTCCTCGCCGCGGGAACCGACGACGACGTCACGGACTCGGAGGACGAATGGGACTTGTTTCACGAAGAGCTGGACGATATCTACGAGATTTACCTATAGCAACATCTCCCTAACGTTACCGTTGAAACCCCCCTTTATCGTTTttgactacccccccccccctccttcaccTTTACCGTGCTGTAGAATGGACTGTCTTGTGTGTTTTGGACAGTAGCTTCTCTCCTCTGTGTTGTGGCAGTGCCGTTGGGGCAGGCCTTTCATTCAGAAATCAACtacatgaagaagaagaagaagaattaacagatttaaaaaacaaatgtaaatgaGAAACAGGTGGGTGTAAAACCATTTTTCTAGAAACATCCTGTCCTTGTGAATTTATCTATCCGTGTCAGgttcatgtaaaaaaaataacaacaacaaaaaacaaagggggaaaaaaattaCAAACATTTTTTTGAAAATATCGCTAATAAACAGTGTTTATTTGTGGACGTGGGTTTGACTTACCGTTTTTACCCAGGTGATGTTTTTAAgacttgttttttgttttgttttgaggaTGAGGCACCTAAACCAACTCTACACAACTATACTTCCTGGTGATGATGTCATGTCTGTGGTGGTCATGGGTATCGTAGTCCTCTGGTTGGTCATGCACTGAGTATATTGGGTGGAGGGAGACAGCAGTCCTGTCGACTTCCTATATTTACATGTACCCTCTTGattcactctctttccctcctccctggTGGTGGGAACTCCCTCTGTCAAGGAGGGGGATGAGGACGACTCCTCTGTCAAGGAGGGGGTGAGGATGACTCCTCTGTCAAGGGGGGGGTGGGGGCTTCGGGGAACAACTTACAATATCTAAAGTTGTTTGTTTTAAATGGGCCCAAGTCCACTTTtattttatcccccccccccccccccgatcgaATCGCAGCTATTATTCAGGAACACCCGTGGTACCTAATGACAAGTCTCTCCTCAGAACCGAGCTGATAGTGACACTCGCTGACTCTGTGTCCCTAGTGGCGCCATATTGTGactatacactgagtgaacaaaacattaggaacaccttcccaatattgttgcacccccccccccccccccccccaccccccaccctctcATTTCTTTCGGGGGGCATGAACTCTACCAGGTCTGATCCTTATACCGTAGGGCTCTAGTGAACTGCCAGTGGTCTAGAGAGGGTGCCGTTTGGAACACAGTCCTGGTCTTGGTCACTACTACTTCTCTCTGAACTCCCATTTAGAATGcactatatatattatgtatctCTTCTTGTTTTTCTACGGTCCACAACCATCCATCATGACTTGAAATTAAAGTTTATTATCAAAAGTTA
>TU1953806
ATTTGCCTGAAATATCCTGCTGCTCTGGCGTGCCCTCTGGCGGTAGGTCGGTGCATGGGCTTCATTATAGGTCACATGCAGAGAAACAGCAGCAGCGTCGATTTTCCGAAGATTCCCGATTCGGAGCTCGACTTTCCGGAAGATCCGGGTACTCGGCTTCATTACATTACAGGTCACATGAAGAGAAACAACAGCAGCAGCGTCGATTTTCCGAAGATCCCCGATTCGGAGCTCGACTTTCCGGGAAGATCCGGGTACTGGGCTTCAACCTCAACATAACAGCAATGGCGGAGGCAGCAGCTACAGCGGCTCCAGCAATACCAGGAGCCTGGACCAAACACGTCACCTGCAGGTATTTCATGCATGGGCTTTGCAAAGAAGGCATCAACTGTCGATATTCCCATGATCTCAACACCAGTCAACCAGCTGCAGCTATGATTTGCAAGTTCTTTCAGAAAGGAAACTGTGTGTTCGGCGACCGGTGCAGGT

Function

symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

NR:

description
LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase makorin-1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956808.1 False 2807 mRNA 0.51 8 9824850 9864743
TU1953806 True 489 lncRNA 0.52 2 9824762 9826152

Neighbor

gene id symbol gene type direction distance location
LOC118942867 NA coding upstream 54702 9769444 ~ 9771487 (+)
LOC118942866 LOC106576670 coding upstream 101864 9532104 ~ 9722986 (+)
LOC118936575 LOC106592244 coding upstream 411679 9402494 ~ 9413171 (+)
LOC118943004 LOC106591072 coding upstream 433808 9387717 ~ 9391585 (+)
LOC110507941 LOC106592244 coding upstream 470378 9336881 ~ 9354472 (+)
LOC110516560 LOC106576660 coding downstream 3659 9868402 ~ 9870589 (+)
LOC118942870 NA coding downstream 116052 9980795 ~ 9981137 (+)
LOC118942996 NA coding downstream 205733 10070476 ~ 10098024 (+)
LOC110510583 LOC106597972 coding downstream 456449 10321192 ~ 10323104 (+)
LOC110490805 LOC106591178 coding downstream 658203 10522946 ~ 10699071 (+)
G1706051 NA non-coding upstream 8208 9815208 ~ 9816642 (+)
G1706031 NA non-coding upstream 24641 9784323 ~ 9800209 (+)
G1706027 NA non-coding upstream 48224 9775750 ~ 9776626 (+)
G1706010 NA non-coding upstream 78708 9744675 ~ 9746142 (+)
G1706082 NA non-coding downstream 23109 9887852 ~ 9888872 (+)
G1706086 NA non-coding downstream 31605 9896348 ~ 9896604 (+)
G1706087 NA non-coding downstream 42124 9906867 ~ 9907072 (+)
G1706095 NA non-coding downstream 62603 9927346 ~ 9927550 (+)
G1706096 NA non-coding downstream 66081 9930824 ~ 9931079 (+)
G1706013 NA other upstream 71377 9748185 ~ 9753473 (+)
G1705920 NA other upstream 164710 9659331 ~ 9660140 (+)
G1705918 NA other upstream 169132 9655298 ~ 9655718 (+)
G1705279 NA other upstream 811687 9011926 ~ 9013163 (+)
G1705267 NA other upstream 848285 8975304 ~ 8976565 (+)
G1706090 NA other downstream 50970 9915713 ~ 9918019 (+)
G1706152 NA other downstream 269645 10134388 ~ 10135384 (+)
LOC110531908 LOC106594049 other downstream 1244685 11103180 ~ 11138813 (+)
G1706652 NA other downstream 1405986 11270729 ~ 11272473 (+)
G1706711 NA other downstream 1533297 11398040 ~ 11399288 (+)
G1706062 NA non-coding downstream 9107 9835259 ~ 9835795 (+)
G1706065 NA non-coding downstream 24385 9850537 ~ 9857642 (+)
G1706069 NA non-coding downstream 30468 9856620 ~ 9857023 (+)

Expression


Co-expression Network