LOC110516560 (LOC106576660)


Basic Information

Item Value
gene id LOC110516560
gene name LOC106576660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9868402 ~ 9870589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594958.2
AGTTAACTAAGGAAGAATTTTTCAcgtctctcattgacttctcaagcCCTCAACACTGGCTTGTTCCCGGAAGTATCGCGATattgcgcctctgggtttagaaactctgtgctaAAAGCATATATCACTACCAAACCAGGGAagaaaaagaagagaggagagaaaggaaagcGAACGCGCAAATACATGCATACAATGATAGCAGAAATTGGTGCCGCCGACAATCCCAAGGCCAGCTCCAGCTATCCCCATCCCCAAGCAGCTGTGATCTGCCCGGACTCACCGGTTTCATTCGCCCCGGACTACGGAGTCGGACAGCTGTTCATACGTAGCGCCTCGTCCAGGAGGGACACACAGACGTCCGCGGGGAGTATCAACCCAGACGAGAGCTCCATCAAGCCGCTGGTATCCGGAGTATCCTCCGCTATTACAGACGCCTATATCATGACCTCTGAGGAATTCATGCAGACCGCTCCCTTGTTCGGCCAGAGGTCCAAGAGGAACGTTCTCTACAAGATCCTGTGTTTCCTCATTCTGATATTCCAAGGAGGCATTCTAGATTTCTACCTCATTATCTTCACGGATCTGTACTGGTGTTCGTGGATCGCCACGGATCTGGTGGTGATCTCTGGCTGGGGGATCTTCTTCATGAAGAACGCCAGGAGCAAGAGAGAGCGGGCGTGTGGGTTCCACCAAAAGAACTCTATATTCGGCTGTAACCTCGGCGAGTTTACCTACGCCTACCTGGCCTGGTTAATCTACGTGATCGCCTGCACCCCTAAAATAGTCCTCATTCTAGAGACTTCGATATTAGATCTCATCGCGCTCAAAGTTCCGTTCGGTGTAACCGGATTTAAGATTATCACGTTGCTCTCGGTCCCGTTACTCTACTGTCTCGTCAATTCTATCACCGAGGACCAGAACGGAGCTACGCGCCACCGGTCCCAAAGCTGCTTCATCACCACCTGTCTGGACCTCGCAGACTGTTTTACCCTGGTGGAGTTGTATCTGAAGAACGAGATACCGACGGTCTATTTAAAATACACGGTCATCTCGGTGTATTTCATCGCCCTGGGCGTCCCAGTGGTGTGGTTATACGAGTTGACAGCCTCCGAGATGCGCTGTCGCTGGGTCTGGGCTAGGTTCCTGGTCGGTGTGTTGGTCAACGCCCCACTTCTGGTGGTGCGGTGTTTCCAGGTGTATGTTCACGAGATGCCCGTCTCAGTGTTCATGTTCAAGAATATGTTCTTCCTGGCCTGTAAGTGTCTGGAGCTTATAGAACAGTGTTTCACAGTGCGGGGTGTCAGGAGGTTCGGTGAGGGAAGCAACCCGGCGCAGTTCTCTCACTGTGTCTCAGAGAACGATATGTGTCCCCATGGATATGTCAACACCCTGGCGGTTACCACGCAGTCATAGGCCCGGCTTGGATGTCACCCTGGCCGTCACTACCTAGACCTAAAACGGCCTGGATTTTATTTTATCCCCCTGGAGGGTGGAAGGCACATGAGTGATGCTGAAGGAAGAATTTTGAGGGACAGGGGTTACGCCCTTAAacggcaccctatgccctatatagtgcacctacttttgaccagggctaatAGGGTTCTGATCAAagggagtgcactatatagggaatagggtgccaatgaGGATGCACCACCCCACAGGTGTCAATCAACGACAGCCTTATTGACGATTTTGTCATTTATTCAGATGTGAACATTTGATGACAACAGGTGCTACAGAATCATTATGCATCAACTACACCTGCTTAAGATCTGGCCAACCTGGCAGACCTGGCCGACCTGGCAGACCTGGCCACTGGCCAACCTGGCAGACCTGGCCACTGGCCAACCTGGCAGACCTGGCAGACCTGGCCAACCTGGCAGACCTGGCCACTGGCCAACGATTGTCGTTTTGAAATGGGAGTCTTGGATATGGTGTCAATGTCGATGTAAAGTCATGTTTTACGTTGGTAGAGTCTTGTCTCTCAATCTGTGAAACTTCCAAATAGCATTTCCTAATCAATGAATAGATGGAAACCTTGTGGTAATATACCTGATTAGTGTGTAATTGCGGTATACGTAATGATTCTAATGTGTAATCATGTCCTCTCATTTCCTAAACTATTTTGGGGGGAATATTTCATGTTATCAATATAAATCAATTTATATTTCTTAAAGAA

Function

NR:

description
cat eye syndrome critical region protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594958.2 True 2188 mRNA 0.49 1 9868402 9870589

Neighbor

gene id symbol gene type direction distance location
LOC118942868 mkrn1 coding upstream 3659 9824762 ~ 9864743 (+)
LOC118942867 NA coding upstream 98254 9769444 ~ 9771487 (+)
LOC118942866 LOC106576670 coding upstream 145416 9532104 ~ 9722986 (+)
LOC118936575 LOC106592244 coding upstream 455231 9402494 ~ 9413171 (+)
LOC118943004 LOC106591072 coding upstream 477360 9387717 ~ 9391585 (+)
LOC118942870 NA coding downstream 110206 9980795 ~ 9981137 (+)
LOC118942996 NA coding downstream 199887 10070476 ~ 10098024 (+)
LOC110510583 LOC106597972 coding downstream 450603 10321192 ~ 10323104 (+)
LOC110490805 LOC106591178 coding downstream 652357 10522946 ~ 10699071 (+)
LOC118942873 NA coding downstream 730399 10600988 ~ 10602420 (+)
G1706053 NA non-coding upstream 8628 9819891 ~ 9859774 (+)
G1706065 NA non-coding upstream 10760 9850537 ~ 9857642 (+)
G1706069 NA non-coding upstream 11379 9856620 ~ 9857023 (+)
G1706062 NA non-coding upstream 32607 9835259 ~ 9835795 (+)
G1706082 NA non-coding downstream 17263 9887852 ~ 9888872 (+)
G1706086 NA non-coding downstream 25759 9896348 ~ 9896604 (+)
G1706087 NA non-coding downstream 36278 9906867 ~ 9907072 (+)
G1706095 NA non-coding downstream 56757 9927346 ~ 9927550 (+)
G1706096 NA non-coding downstream 60235 9930824 ~ 9931079 (+)
G1706013 NA other upstream 114929 9748185 ~ 9753473 (+)
G1705920 NA other upstream 208262 9659331 ~ 9660140 (+)
G1705918 NA other upstream 212684 9655298 ~ 9655718 (+)
G1705279 NA other upstream 855239 9011926 ~ 9013163 (+)
G1705267 NA other upstream 891837 8975304 ~ 8976565 (+)
G1706090 NA other downstream 45124 9915713 ~ 9918019 (+)
G1706152 NA other downstream 263799 10134388 ~ 10135384 (+)
LOC110531908 LOC106594049 other downstream 1238839 11103180 ~ 11138813 (+)
G1706652 NA other downstream 1400140 11270729 ~ 11272473 (+)
G1706711 NA other downstream 1527451 11398040 ~ 11399288 (+)

Expression


Co-expression Network