LOC118936576 (LOC106609822)


Basic Information

Item Value
gene id LOC118936576
gene name LOC106609822
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9911082 ~ 9926166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956813.1
ctcCCCTCTCCATGAAAAACAAGAGTGCTTCTCATTTCTAAAAGCATGCCTCTGATGTCCGTGTCTCACTCACTTCAACCACTGTGTTCGTCATAGTGACGTTGTGATCgagctgctcctctccctctctctctctctctctcttggttcaGAACAGCGCGTGCCTCAGAACCCTGAGATAAACGGCTGTACGGCAGCGCCGGTACCGGGACGCCGCTCCAACAGATCAACACTTGAACAGAGCGACAGAGTGGAAACGGTCAAACGACTATGGATGCGTCCTGCTCgatacaaaaaacaaaaaaacatttttcaaaggaattattgttattttttcttTGAAGTGTAAACTTTAACAACCACTTTTTAAATCGTAACGGAATCAAACCGCCATAATGAATGATATTAAACTTGCGGTTTTGGGAGGCGAAGGAGTCGGGAAATCAGCTCTCATCGTTCGATTCCTGACGAGGCGATTTATCGGCGAATATGCCTCATCATCAGAATGCATATACAGGAAGCGTCTGTCTATTGATGGTAGACAGCTGAATCTAGAACTCTATGATCCATGCTCACAGGCCTGTGAGGGGAAGTCGACTCTGACCGACCAGATCCACTGGGCTGATGGCTTCGTAGTGGTCTATGACATCAGTGACCGCTCCTCCTTCATCAAGGCTAAAGCCATAGTACACCTGATCAGAGAGTTAAACCTGGGAGTGGCCAAAAGggaTGCTGACACTCTGGTGTTCCTGGTGGGTAACAAGCAGGACCTGTGCCACGTGAGGGAGGTGCGTCGAGAGGAAGGCCAGCGCCTGGCAGCCGAGTCCCAGACACAGTTCTACGAGCTCTCAGCCGCAGAACACTACCAGGAAGTGGTCCTCATGTTCTCGAAGATGGTCCACAACGCCAGCCTTGGGGGCAAGGCcaaggagaggagacggagaCCTAGTGGCTCCAAGTCCATGGCCAAACTCATCAATAATGTCTTCGGGAAGCGGAGGAAATCAGTGTGAAAGGGGAGATGGGAAAGGTCAAGTGTTTACCCCAGGCCTAAAGAAGCCTTGTTACTTCGTTACTCCCCTTGGGACTGTTGTTGAATGGTGAAAGGGATTGTGGGAAAATGGTCGATAATGTTGAATGGacccaccaacaacaacaacatgggctTCACCTACTTTACTTGCTGTTGCTATTATTATTGTTGATCATGAAAAGAGTCAATAATAATTAGACCTCCACTCCTCTGGTTGCCAACCACCAAGGGACAGCTCTATATGGTATAAATGGTTCTACACTTAGAACAGAGCTTATTGGACTGATAGGACTGCTGCTGTTTAGACTTTCTGACTCGTGCTTACCAaactcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgacacCACAGGGAGACTCCATTATTAGCTATGTAAAGTAAATTACACCACAGGGAGACTCCATTATTAGCTATGTAGAGTATATGATACCACAGGGAGACTCCATTATTAGCTATGTAGAGTATATGATACCACAGGGAGACTCCATTATTAGCTATGTACTGTAAATGACACCACGGGGAGACTCCATTATTAGCTATGTACTGTAAATGACACCACGGGGAGACTCCATTATTAGCTATGTTGAGTATATGATACCACAGGGAGATTCCATTACTGGCCCTATTGCCTCTACTGCTCAATGCATGCCACAGTGGCAGACACAGTCCATGTTTCATACATCTTTCATTATGACTCAActgtatcccaaatagcaccctattccctatatataatgcactatgtttgaccggagccctatgggcccttatcgaaagtagtgcactaaacagggaacagggtgccatttgggatgcttccTGAATACCGCTACTGAAGAGAGCCAGCAGTTTATTGGCATGGAGGTTGTTTTTGGGGGGAAATTCTTTCTGTGGTTACTGTGGTTTCCAGGGAAAGGTAATGTATCATAAAATAATGAATGTCTGTCTGTTTAGTTCCATCTTCCTGTTGTTCATTGTTCCCTGGATTAAAGTCCGAATTATAAACTCATAAAATAATGTAAAActataataaacactgtaatcaAG
>TU1954854
ccccccctcagggaTGCTGACACTCTGGTGTTCCTGGTGGGTAACAAGCAGGACCTGTGCCACGTGAGGGAGGTGCGTCGAGAGGAAGGCCAGCGCCTGGCAGCCGAGTCCCAGACACAGTTCTACGAGCTCTCAGCCGCAGAACACTACCAGGAAGTGGTCCTCATGTTCTCGAAGATGGTCCACAACGCCAGCCTTGGGGGCAAGGCcaaggagaggagacggagaCCTAGTGGCTCCAAGTCCATGGCCAAACTCATCAATAATGTCTTCGGGAAGCGGAGGAAATCAGTGTGAAAGGGGAGATGGGAAAGGTCAAGTGTTTACCCCAGGCCTAAAGAAGCCTTGTTACTTCGTTACTCCCCTTGGGACTGTTGTTGAATGGTGAAAGGGATTGTGGGAAAATGGTCGATAATGTTGAATGGacccaccaacaacaacaacatgggctTCACCTACTTTACTTGCTGTTGCTATTATTATTGTTGATCATGAAAAGAGTCAATAATAATTAGACCTCCACTCCTCTGGTTGCCAACCACCAAGGGACAGCTCTATATGGTATAAATGGTTCTACACTTAGAACAGAGCTTATTGGACTGATAGGACTGCTGCTGTTTAGACTTTCTGACTCGTGCTTACCAaactcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgacacCACAGGGAGACTCCATTATTAGCTATGTACTGTAAATGACACCACGGGGAGACTCCATTATTAGCTATGTACTGTAAATGACACCACGGGGAGACTCCATTATTAGCTATGTTGAGTATATGATACCACAGGGAGATTCCATTACTGGCCCTATTGCCTCTACTGCTCAATGCATGCCACAGTGGCAGACACAGTCCATGTTTCATACATCTTTCATTATGACTCAActgtatcccaaatagcaccctattccctatatataatgcactatgtttgaccggagccctatgggcccttatcgaaagtagtgcactaaacagggaacagggtgccatttgggatgcttccTGAATACCGCTACTGAAGAGAGCCAGCAGTTTATTGGCATGGAGGTTGTTTTTGGGGGGAAATTCTTTCTGTGGTTACTGTGGTTTCCAGGGAAAGGTAATGTATCATAAAATAATGAATGTCTGTCTGTTTAGTTCCATCTTCCTGTTGTTCATTGTTCCCTGGATTAAAGTCCGAATTATAAACTCATAAAATAATGTAAAActataat

Function

NR:

description
ras-related and estrogen-regulated growth inhibitor-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956813.1 False 2129 mRNA 0.46 5 9911082 9926166
TU1954854 True 1271 lncRNA 0.46 2 9911098 9912494

Neighbor

gene id symbol gene type direction distance location
LOC110490693 il17r coding downstream 17253 9875675 ~ 9893829 (-)
LOC110510472 LOC108426397 coding downstream 119686 9742838 ~ 9791396 (-)
LOC110507938 LOC106591072 coding downstream 402622 9487581 ~ 9508460 (-)
LOC110515809 LOC106592244 coding downstream 430566 9464081 ~ 9480516 (-)
LOC118936574 LOC106592244 coding downstream 531207 9371753 ~ 9379875 (-)
LOC118942869 arhgef39 coding upstream 30739 9956905 ~ 10061152 (-)
LOC118942871 NA coding upstream 201904 10128070 ~ 10129253 (-)
LOC110513868 LOC105024897 coding upstream 208122 10134288 ~ 10402746 (-)
LOC118942997 NA coding upstream 459316 10385482 ~ 10387576 (-)
LOC118942872 LOC106609835 coding upstream 480012 10406178 ~ 10491072 (-)
G1706805 NA non-coding downstream 37111 9873301 ~ 9873971 (-)
G1706781 NA non-coding downstream 51988 9824591 ~ 9859094 (-)
G1706780 LOC106609808 non-coding downstream 61285 9849309 ~ 9849797 (-)
G1706784 NA non-coding downstream 88546 9821705 ~ 9822536 (-)
G1706763 NA non-coding downstream 129461 9781231 ~ 9781621 (-)
G1706816 NA non-coding upstream 930 9927096 ~ 9927302 (-)
G1706825 NA non-coding upstream 16706 9942872 ~ 9943613 (-)
G1706832 NA non-coding upstream 29093 9955259 ~ 9955508 (-)
G1706833 NA non-coding upstream 33414 9959580 ~ 9960000 (-)
G1706835 NA non-coding upstream 40998 9967164 ~ 9978503 (-)
G1705975 NA other downstream 268141 9641950 ~ 9642941 (-)
LOC118942865 LOC106593190 other downstream 634008 9261999 ~ 9277148 (-)
LOC118942864 NA other downstream 807927 9100061 ~ 9104616 (-)
LOC118942856 crbl2 other downstream 1102158 8805889 ~ 8808961 (-)
G1706990 NA other upstream 434258 10360424 ~ 10360975 (-)
G1706993 NA other upstream 441718 10367884 ~ 10368439 (-)
G1707057 NA other upstream 604451 10530617 ~ 10531271 (-)
LOC110499727 LOC106609821 other upstream 894758 10796557 ~ 10897355 (-)
LOC110518048 LOC106576476 other upstream 1038669 10903853 ~ 11086469 (-)
G1706813 NA non-coding upstream 78 9912572 ~ 9914323 (-)
G1706814 NA non-coding upstream 6611 9919105 ~ 9919507 (-)
G1706815 NA non-coding upstream 12051 9924545 ~ 9925203 (-)

Expression


Co-expression Network