LOC110510583 (LOC106597972)


Basic Information

Item Value
gene id LOC110510583
gene name LOC106597972
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10321192 ~ 10323104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591905.2
TACAGAAAGGCCACGCCCACTAGTGTTTACAGAAAGGCCACACCCACTAGTGTTTGAAGAAAGGCCACACCCACTAGAGTGCTTACAGAAAGGCCACGCCCACTAGTGTTTACAGAAAGGCCACGCTCACTAGAGTGTTTACACCATGCCCACAGACAACGCCCACTAGAGTTAATGATTACACCTCTTCCTTTTAAACAGaggtgtgtgagaggtgtgtgtcaTTTATTTGAGCTGTGAGGTGCTGGTGAGACACATCTTTCTGTTGCCCAGCAGTGtgcaactcctcctcctcagctgTGGTGTTGGTAGATACTAATACCACAAAGGCAATACCACATACAGGGTTCTCCCAGGGATCTTTTTTTAACAAAGAGGTGCTACTGAGTACAGCGGGATGGAGGACATTTCCTGCAATCTAAAGCAAAGAAATACTCCATTTGGGTGTGGTAACAGGCCTTAAATgattataaataatgtttttttttaaatgacagtgGCGCAACCAGTCCACAAGGTGGCGTAGTGCAACTCTTACATTCTTTGAGGAGAACCCGGACATAGAGCGATAATACGGACTAGTCATGGCTTCTGTTCGGTTGTCCAGGTCTCAGAGATTCTTCAAGAACTTATCTCTGGTCCTCCTGAGTGGATCCGTCCCTCTGCTCCTGTGGGCCGCTCTCAGACGCCCGCCGGGCTCTGACAGGAGTCCTCTCCCCGTTCTGGACCTCCTGCCCCCGGACTACGCTGCCGACTTGCCGGCCTGCTCAGCCATCATCCAGGGAGACCTGGAGGGTCTGGAGAGGAAGCAGCTCAGCGTCCTGCTGAAGACCATGAAGAAACAGCAGCTGCTGTCAGAGGCCTTCTACCACAACGTGACTCAGGACTGTCAGAGGTACGTCACAGAAAGAGAGTTCATCACCGTTCCTCTCAGTCAGGAGGAGAAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAGATTGAGATGTTTGAGCGGCTCCTGCGTGCCCTGTACACTCCTCAGAACGTGTACTGCGTCCACATCGACCAGAAGTCATCGGAGGCCTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGTCTGACTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTGGTATATGCCTCCTGGTCCAGAGTGCAGGCCGATCTGAACTGTATGGAGGATCTCCTGAAGTCACCTGTCCAGTGGAGGTACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGGCCCTCAAGCTGCAGAACGGGAGGAACAGCATGGAGTCAGAGACCACCGACGACTATAAAAACAGCAGATGGCAGTTTCACCACAAAATCACCAGCAACATGGTGGTCAAGACGAACGTTAGGAAGAGCCCTCCTCCAATCAGCACCCCCATGTTTTCTGGCAACGCCTACTTCCTGGTGTCCAGGGCCTTTGTCCGTCACGTGATGAAGTCTCAGGAGGTCCGGGCGCTGTTGGAGTGGGAGAAGGACACCTATAGTCCTGATGAACACCTGTGGGCCACCCTGCAGCGCATGCCCTCTGTGCCAGGCTCTAACCCTCCGCACATCAAGTACCATGAATCAGACATGAACGCCATTGCGCGCATTGTGAAGTGGCGTTCCCTGGAAGGAGATGTGAGGAACGGAGCCCCATATCCACCCTGCTCGGGTGTCTACAGGAGGTCCATTTGTGTCTACGGGGCTGGAGATCTCAGGTGGCTCCTACAACATCACCACCTCATCGCTAACAAGTTTGACCCTGAGGTGGATGATGTGGCTATCAGGTGTCTGGAGTCGTACCTGCGCTTCAAAGCCACAGACCGTGTTTCACGAAGGACAGTGGAATCTGAGAGGATCTTACAAAAACGATGA

Function

NR:

description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like, partial

GO: NA

KEGG:

id description
K09662 GCNT3; N-acetylglucosaminyltransferase 3, mucin type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591905.2 True 1913 mRNA 0.52 1 10321192 10323104

Neighbor

gene id symbol gene type direction distance location
LOC118942996 NA coding upstream 223168 10070476 ~ 10098024 (+)
LOC118942870 NA coding upstream 340055 9980795 ~ 9981137 (+)
LOC110516560 LOC106576660 coding upstream 450603 9868402 ~ 9870589 (+)
LOC118942868 mkrn1 coding upstream 456449 9824762 ~ 9864743 (+)
LOC118942867 NA coding upstream 551044 9769444 ~ 9771487 (+)
LOC110490805 LOC106591178 coding downstream 199842 10522946 ~ 10699071 (+)
LOC118942873 NA coding downstream 277884 10600988 ~ 10602420 (+)
LOC110514895 LOC106576365 coding downstream 407446 10730550 ~ 10791811 (+)
LOC110510616 NA coding downstream 471665 10794769 ~ 10796991 (+)
LOC118942874 LOC106609820 coding downstream 577745 10900849 ~ 10902569 (+)
G1706224 NA non-coding upstream 29175 10291103 ~ 10292017 (+)
G1706198 NA non-coding upstream 88337 10231348 ~ 10232855 (+)
G1706139 NA non-coding upstream 194415 10088310 ~ 10126777 (+)
G1706151 NA non-coding upstream 199633 10121250 ~ 10121559 (+)
G1706143 NA non-coding upstream 216796 10102201 ~ 10104396 (+)
G1706252 NA non-coding downstream 63986 10387090 ~ 10387614 (+)
G1706261 NA non-coding downstream 82970 10406074 ~ 10407348 (+)
G1706277 NA non-coding downstream 124397 10447501 ~ 10450684 (+)
G1706278 NA non-coding downstream 127756 10450860 ~ 10458562 (+)
G1706302 NA non-coding downstream 192777 10515881 ~ 10517090 (+)
G1706152 NA other upstream 185808 10134388 ~ 10135384 (+)
G1706090 NA other upstream 403173 9915713 ~ 9918019 (+)
G1706013 NA other upstream 567719 9748185 ~ 9753473 (+)
G1705920 NA other upstream 661052 9659331 ~ 9660140 (+)
G1705918 NA other upstream 665474 9655298 ~ 9655718 (+)
LOC110531908 LOC106594049 other downstream 786324 11103180 ~ 11138813 (+)
G1706652 NA other downstream 947625 11270729 ~ 11272473 (+)
G1706711 NA other downstream 1074936 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 1245325 11568429 ~ 11568956 (+)
G1707462 NA other downstream 1330797 11653901 ~ 11654623 (+)

Expression


Co-expression Network