LOC110515610 (tsn8)


Basic Information

Item Value
gene id LOC110515610
gene name tsn8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11288244 ~ 11304066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956868.1
ATGCGGGCTAGTCCCTCCCATAACACAAAACACCATTGAGCAGCATGTCAACACACTCTCATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATCCaaactgttgtttttattataACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCGTCTGTGTCTTGATCTGTATCATCAGCACCCTCTTGCTGGCCATCACATTATTTGGACATGGGTACTTCCACCAATCAGAAGAAATAGAGGATATTCTGCCTGGGATAGTAGTTCTGTATGTCCTAGAAGCAGCAACCCTGGTCCTGTCAATCTTTGGTGTCTATGGCGCTCGGAAGGAGAAGAAATGGGCTGTGGTTCTGTTTTCTGTAGGTATGTCACTGGCCAGCCTATACCTGTTTGTGGAGTGTGTGAACGCATATCATTCCAAACACGagATGGAGGAGTTAACCAGAGAGGAACATCTAGCGATGATGCCTCTGAGTGGAGCGAAACAAACTGATATAGAAACGTTATACAACATACAGACTAACTTCAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCGTGGTAACAATACAAGATTTGTTATTCACTATCCCAACAGTGATATGTCTGAGGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATGAAAAGCCATGTCTTCCCATCCTGATCTCTGTCGAGAGCTATGCAATCAGCCTGGGAATAGGAACATTAGTAGCACTGACAGCATTATGGGATGTTGGAGTTGTCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCTTTCAACCACCTCAATACAGAGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGATACTCAATGcactagcctgagtgccagtctgtttgtgccatcatgacAACTCCGGTCACTCATTTGTGTCAAGCCAAACATGACAATGGGTGACAAAGAGTTGGCTTGGCAATGACAGCAATGGAGTTGTCATTGGCCAGACCACAAACatatctgggatcaggctagcaaTGCATCCATATTATGTACATACTCATAACACACATGAAAGGACAACTCAGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGATTAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAGTGTCTTGAATAAAGGGACAAGCATCTTTTAA

Function

NR:

description
Tetraspanin-8

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956868.1 True 1412 mRNA 0.43 9 11288244 11304066

Neighbor

gene id symbol gene type direction distance location
LOC110515612 LOC106592662 coding downstream 4092 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 18677 11267383 ~ 11269567 (-)
LOC110531893 LOC105024883 coding downstream 52712 11214204 ~ 11235532 (-)
LOC110531911 LOC106577472 coding downstream 81172 11139647 ~ 11207072 (-)
LOC110518048 LOC106576476 coding downstream 201775 10903853 ~ 11086469 (-)
LOC110499803 LOC106609751 coding upstream 23207 11327273 ~ 11335783 (-)
tymp typh coding upstream 62649 11366715 ~ 11370357 (-)
LOC118942879 typh coding upstream 75533 11379599 ~ 11383369 (-)
LOC110490863 NA coding upstream 80974 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 88966 11393032 ~ 11397690 (-)
G1707387 NA non-coding downstream 3199 11284841 ~ 11285045 (-)
G1707384 NA non-coding downstream 10360 11277665 ~ 11277884 (-)
G1707374 NA non-coding downstream 28432 11259079 ~ 11259812 (-)
G1707359 NA non-coding downstream 57914 11228597 ~ 11230330 (-)
G1707341 NA non-coding downstream 108423 11177667 ~ 11179821 (-)
G1707395 LOC106596128 non-coding upstream 7209 11311275 ~ 11313725 (-)
G1707396 LOC106596128 non-coding upstream 9687 11313753 ~ 11315006 (-)
G1707397 NA non-coding upstream 12912 11316978 ~ 11317841 (-)
G1707401 NA non-coding upstream 22163 11326229 ~ 11326834 (-)
G1707392 NA non-coding upstream 33928 11337994 ~ 11341126 (-)
G1707317 NA other downstream 154454 11130215 ~ 11133790 (-)
G1707276 NA other downstream 267206 11019026 ~ 11021038 (-)
G1707366 NA other upstream 77596 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 311244 11615310 ~ 11628453 (-)
prickle1b LOC106576510 other upstream 637063 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 816710 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1161161 12464677 ~ 12465880 (-)

Expression


Co-expression Network