LOC110499803 (LOC106609751)


Basic Information

Item Value
gene id LOC110499803
gene name LOC106609751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11327273 ~ 11335783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956869.1
CTAACCATCAGTGACATAATGTTCATGCTAGTCCCTCCCATAACACAAAACACCATTGAGCAGCATGTCAACACATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATTATAACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCATCTGTGTCTTGATCGGGATCATCAGCACCCTCTTGCTGGCCATCACATTATTTGGACATGGGCACTTCCACCAATCAGAAGAAATAGAGATTCTGCCAGGTATAGTAGTTCTGTATGTCCTAGAAGCAGCAACCCTGGTCCTGTCAATCTTTGGGGTCTATGGCGCTCGCAAGGAGAAGAAATGGACTGTGGTTCTGttttCTGTAGGTATGTCACTGGCCAGCCTATACCTGTTTGTGGAGTGCGTGAATGGATATCAAAGCAAACACGagATGGAGGAGTTAACCAGAGAGGAACATCTAGCGATGATGCCTCTGAGTGGAGCGAATCAAACTGATTTAGAAGGGCTATACAACATGCAGACTAACTTAAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCCTGGTAACAATACAAGATTTGTTATTCACTATCCCAACAGTGATATGTCTGAGGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATAAAGAGCCATGTCTTCCCATCCTGATCTCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGCAGCACTTAACGCATTATGGGATGTTGGAGTTGCCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCTCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACATGACAGTGTTGACTTGGCAATGACAGACTGCCATGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGATAGCAATGCACTCATATTATGTACATACTCTTAACACACATGAAAGGACAACTCGGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTCAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAGTGTCTTGAATAAAGGGACAAGCATCTTTTAA
>XM_036956870.1
TAAGCTCTAACCATCAGTGACATAATGTTCATGCTAGTCCCTCCCATAACACAAAACACCATTGAGCAGCATGTCAACACATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATTATAACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCATCTGTGTCTTGATCGGGATCATCAGCACCCTCTTGCTGGCCATCACATTATTTGGACATGGGCACTTCCACCAATCAGAAGAAATAGAGATTCTGCCAGGTATAGTAGTTCTGTATGTCCTAGAAGCAGCAACCCTGGTCCTGTCAATCTTTGGGGTCTATGGCGCTCGCAAGGAGAAGAAATGGACTGTGGTTCTGATGGAGGAGTTAACCAGAGAGGAACATCTAGCGATGATGCCTCTGAGTGGAGCGAATCAAACTGATTTAGAAGGGCTATACAACATGCAGACTAACTTAAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCCTGGTAACAATACAAGATTTGTTATTCACTATCCCAACAGTGATATGTCTGAGGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATAAAGAGCCATGTCTTCCCATCCTGATCTCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGCAGCACTTAACGCATTATGGGATGTTGGAGTTGCCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCTCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACATGACAGTGTTGACTTGGCAATGACAGACTGCCATGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGATAGCAATGCACTCATATTATGTACATACTCTTAACACACATGAAAGGACAACTCGGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTCAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAGTGTCTTGAATAAAGGGACAAGCATCTTTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609751 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956869.1 False 1503 mRNA 0.44 9 11327273 11335777
XM_036956870.1 True 1434 mRNA 0.44 8 11327273 11335783

Neighbor

gene id symbol gene type direction distance location
LOC110515610 tsn8 coding downstream 23207 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 43121 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 57706 11267383 ~ 11269567 (-)
LOC110531893 LOC105024883 coding downstream 91741 11214204 ~ 11235532 (-)
LOC110531911 LOC106577472 coding downstream 120201 11139647 ~ 11207072 (-)
tymp typh coding upstream 30932 11366715 ~ 11370357 (-)
LOC118942879 typh coding upstream 43816 11379599 ~ 11383369 (-)
LOC110490863 NA coding upstream 49257 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 57249 11393032 ~ 11397690 (-)
LOC110500987 LOC106598106 coding upstream 86841 11422624 ~ 11426073 (-)
G1707401 NA non-coding downstream 439 11326229 ~ 11326834 (-)
G1707397 NA non-coding downstream 9432 11316978 ~ 11317841 (-)
G1707396 LOC106596128 non-coding downstream 12267 11313753 ~ 11315006 (-)
G1707395 LOC106596128 non-coding downstream 13548 11311275 ~ 11313725 (-)
G1707391 NA non-coding downstream 29504 11297397 ~ 11297769 (-)
G1707392 NA non-coding upstream 2211 11337994 ~ 11341126 (-)
G1707409 NA non-coding upstream 5458 11341241 ~ 11341544 (-)
G1707410 LOC106609679 non-coding upstream 5867 11341650 ~ 11341897 (-)
G1707411 NA non-coding upstream 11100 11346883 ~ 11347093 (-)
G1707413 NA non-coding upstream 12856 11348639 ~ 11350721 (-)
G1707317 NA other downstream 193483 11130215 ~ 11133790 (-)
G1707276 NA other downstream 306235 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 329619 10903853 ~ 11086469 (-)
G1707366 NA other upstream 45879 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 279527 11615310 ~ 11628453 (-)
prickle1b LOC106576510 other upstream 605346 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 784993 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1129444 12464677 ~ 12465880 (-)

Expression


Co-expression Network