LOC110518478 (lsm8)


Basic Information

Item Value
gene id LOC110518478
gene name lsm8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11355998 ~ 11359023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956871.1
GTGGGTAAATGGTGACTGACTGATCTTCAAATAATAATCAGTAATTAATTATGATCCAAGGTCGAACAAGCCTATTATCTCTAGAAAGGGCGGTCTGGTAAACTCATGGATCGGTAGGGCGACACCACTGAGGTATAAAGAACGGCGCGACACTCATTTTCTGTGGATTCGGCGCCATCTTCTGGACACCAAAATAATTAGTGGGTCTGCAATCATCTAGTCTGGTCTGATGCTGTTTCCGGTTTGTGCCTGCACGCCGATTTTGTGATCTACGGTGGAGCTACGTTTGTGTTTTCCAAAGAAACCCGGCGGATTTGAACGAGTCTTTTGTTGTCACCATGTCGACTGCCCTCGAGAGCTACATCAACCGTACAGTGGCCATCGTTACATCTGACGGACGGATGATAGTGggcacCCTGAAGGGCTTTGACCAGACCATCAACCTGATTCTGGATGAGAGTCATGAGCGTGTGTTCAGTTCCTCTCAGGGCGTGGAGCAGGTGGTCCTGGGACTATACATCGTCAGAGGAGACAACGTAGCTGTGATTGGGGAGATTGACGAGGACACAGATTCTTCGCTGGACCTGGGGAACATCCGCGCTGAACCCCTTAACTCTATAGTCCACTGACCTCTCACCCTGACCCCTCAACTTGGATGTGCTGACCCCTACACctgagtgattgtgtgtgtgagagagagtgtgaaagagaaagcTAGAAATAGAGTAGTGTTTCAATTTTCACCACCTACTCAGCAATAGCTGATGTCCCTGTCTGTAGAGCACAGTTTATCTCCCCCGTGAAGGACCCAGGGGACTAATAATAGGATGTTGATGAATGTGGTGATATTTTTTAATAAAGTGTTTCGTTTAACATGAA

Function

symbol description
lsm8 Predicted to enable RNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).

NR:

description
LSM8 homolog, U6 small nuclear RNA associated

GO: NA

KEGG:

id description
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956871.1 True 879 mRNA 0.48 4 11355998 11359023

Neighbor

gene id symbol gene type direction distance location
LOC110499792 LOC106595912 coding upstream 1003 11341636 ~ 11354995 (+)
LOC110499797 LOC106596128 coding upstream 39276 11311190 ~ 11316722 (+)
LOC118942876 fgl2 coding upstream 155049 11194545 ~ 11200949 (+)
LOC110531908 LOC106594049 coding upstream 217185 11103180 ~ 11138813 (+)
LOC118942875 NA coding upstream 243323 11112212 ~ 11112675 (+)
LOC110490628 LOC106609728 coding downstream 51428 11410451 ~ 11414640 (+)
LOC110503752 LOC106576575 coding downstream 73261 11432284 ~ 11468646 (+)
nrcama LOC105024872 coding downstream 120757 11479780 ~ 11624211 (+)
cntn1b LOC106593403 coding downstream 271409 11630432 ~ 11660551 (+)
LOC110515322 LOC106576579 coding downstream 365403 11724426 ~ 11797595 (+)
G1706678 NA non-coding upstream 20953 11298864 ~ 11335045 (+)
G1706694 NA non-coding upstream 29278 11326236 ~ 11326720 (+)
G1706684 NA non-coding upstream 38206 11317123 ~ 11317792 (+)
G1706657 NA non-coding upstream 71878 11283196 ~ 11284120 (+)
G1706655 NA non-coding upstream 78526 11276700 ~ 11277472 (+)
G1706665 NA non-coding downstream 4133 11363156 ~ 11433934 (+)
G1706708 NA non-coding downstream 11108 11370131 ~ 11383885 (+)
G1706710 NA non-coding downstream 27710 11386733 ~ 11403507 (+)
G1706662 NA non-coding downstream 37486 11396509 ~ 11397615 (+)
G1706723 NA non-coding downstream 59649 11418672 ~ 11419205 (+)
G1706652 NA other upstream 83525 11270729 ~ 11272473 (+)
G1706152 NA other upstream 1220614 10134388 ~ 10135384 (+)
G1706090 NA other upstream 1437979 9915713 ~ 9918019 (+)
G1706013 NA other upstream 1602525 9748185 ~ 9753473 (+)
G1706711 NA other downstream 39017 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 209406 11568429 ~ 11568956 (+)
G1707462 NA other downstream 294878 11653901 ~ 11654623 (+)
G1707772 LOC106576513 other downstream 504639 11863662 ~ 11864573 (+)
G1708014 NA other downstream 889005 12248028 ~ 12250124 (+)

Expression


Co-expression Network