tymp (typh)


Basic Information

Item Value
gene id tymp
gene name typh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11366715 ~ 11370357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956876.1
agagagagaaagacaatagttgaacagttttgaacaaatgaaTTCCTTCCAAAATGAAgtagaagcaagagagaaatagagcaagagagagagattattattgttattattattatatattttttcagtttcaTTTTTCTGGCAAGTTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGGTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGctgtgtgtcagtccgctgTGTGCCAGTCCGCTGTGTGCCAGtccgctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtcagctgtgtgtcagtccgctgTGTGTCAGTGAGCTGCAGGGATGGCGCACCACGAGCAGAGCAAAGCCACTTTCCCCGAACACATTCGCAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAGAttggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACTCTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAACGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCTATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGAGGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTGGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAAACAGAACTGGAAACACAGGGCCATgGGACAGTGCTGGACATAGACGGCATGGTTATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCGGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATCTCAGTGTTTAATTTTTAAAGAATGTATAGTTCA

Function

NR:

description
thymidine phosphorylase-like

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956876.1 True 1823 mRNA 0.52 10 11366715 11370357

Neighbor

gene id symbol gene type direction distance location
LOC110499803 LOC106609751 coding downstream 30932 11327273 ~ 11335783 (-)
LOC110515610 tsn8 coding downstream 62649 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 82563 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 97148 11267383 ~ 11269567 (-)
LOC110531893 LOC105024883 coding downstream 131183 11214204 ~ 11235532 (-)
LOC118942879 typh coding upstream 9242 11379599 ~ 11383369 (-)
LOC110490863 NA coding upstream 14683 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 22675 11393032 ~ 11397690 (-)
LOC110500987 LOC106598106 coding upstream 52267 11422624 ~ 11426073 (-)
akap14 LOC106576576 coding upstream 61669 11432026 ~ 11433779 (-)
G1707416 NA non-coding downstream 5657 11353330 ~ 11361058 (-)
G1707418 lsm8 non-coding downstream 7709 11356304 ~ 11359006 (-)
G1707415 NA non-coding downstream 11721 11354137 ~ 11354994 (-)
G1707413 NA non-coding downstream 15994 11348639 ~ 11350721 (-)
G1707411 NA non-coding downstream 19622 11346883 ~ 11347093 (-)
G1707439 NA non-coding upstream 59126 11429483 ~ 11430311 (-)
G1707448 NA non-coding upstream 99403 11469760 ~ 11470228 (-)
G1707592 NA non-coding upstream 168693 11539050 ~ 11539754 (-)
G1707603 NA non-coding upstream 186170 11556527 ~ 11556966 (-)
G1707610 NA non-coding upstream 201799 11572156 ~ 11572948 (-)
LOC110531911 LOC106577472 other downstream 192825 11139647 ~ 11207072 (-)
G1707317 NA other downstream 232925 11130215 ~ 11133790 (-)
G1707276 NA other downstream 345677 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 369061 10903853 ~ 11086469 (-)
G1707366 NA other upstream 11305 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 244953 11615310 ~ 11628453 (-)
prickle1b LOC106576510 other upstream 570772 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 750419 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1094870 12464677 ~ 12465880 (-)

Expression


Co-expression Network