LOC118942879 (typh)


Basic Information

Item Value
gene id LOC118942879
gene name typh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11379599 ~ 11383369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118942879
ttggaaatgtttttttgcctggtcacatgtGTTGtacattgaagtccacaagcaaagggagaGAAGGAACGCAACGTGGCAGTTATGAGAGTGAACTGTATTTACgctgatcaggggtgtattcattccgccgattctgttgaaacatacacacacaatagttTAGTGATTTAAAACAATCCCTTGTGTATTTTCCTCTCCTACTTGTCACAtgcagctgtgtgtcagtccgctgTGTGCCAGTCCGCTGTGTGCCAGtccgctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtcagctgtgtgtcagtccgctgTGTGTCAGTGAGCTGCAGGGATGGCGCACCACGAGCAGAGCAAAGCCACTTTCCCCGAACACATTCGCAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAGAttggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACTCTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAACGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTAGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCTATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGTCGTGCAGGGAGCCTGGATGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAATGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAGACAGAACTGGAGACACAGGGCCACgGGACAGTGCTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGATGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCAGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAAGCCTCTGTCTCCTGCTCTTCACTCTCAAAGTCCTCTCTGATTCACCCATATAAAGTCATCAGATTCTGTGGAGACTGAATAGATGTTTACCGTTTCCAGGAACTGTGTGAAGGCAATTTCTGTTAAACCTTACTAATGTTTGTGTACTTTAAGCCTCGGCATTGGGCTTGAGATGGTTAAAGAAATCAATATAAGATATAAAAGTGTGTGCACATTAATAGAGACATGTTGTAACTGTTCTGGGTGTGTAGAATGACCCCAGGATGTCTGGGAGCTCAGCCAATACTTGACAGGAACTGACTGGTTCCTCTTAAGTTAACTGGAGACAGAGTAAAGGTTTTATCCTGCACACCAATGATTGAACTATTGTTCTGTCTGGAGCCTGTTTCGGGgcaaaatattcatattttgtgtgtgtgtgtgtgtgtgtgaccagtacGACCATACATCATCTGGGCAGACAGTCAAAGGCGCTAGCTTGCCCAACTTGGGGGAACCGTTAAGctactcaaatcaaataaaagtttatttgtca

Function

NR:

description
thymidine phosphorylase-like

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118942879 True 2351 mRNA 0.50 9 11379599 11383369

Neighbor

gene id symbol gene type direction distance location
tymp typh coding downstream 9242 11366715 ~ 11370357 (-)
LOC110499803 LOC106609751 coding downstream 43816 11327273 ~ 11335783 (-)
LOC110515610 tsn8 coding downstream 75533 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 95447 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 110032 11267383 ~ 11269567 (-)
LOC110490863 NA coding upstream 1671 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 9663 11393032 ~ 11397690 (-)
LOC110500987 LOC106598106 coding upstream 39255 11422624 ~ 11426073 (-)
akap14 LOC106576576 coding upstream 48657 11432026 ~ 11433779 (-)
LOC118942880 LOC105024872 coding upstream 244266 11615310 ~ 11628453 (-)
G1707416 NA non-coding downstream 18541 11353330 ~ 11361058 (-)
G1707418 lsm8 non-coding downstream 20593 11356304 ~ 11359006 (-)
G1707415 NA non-coding downstream 24605 11354137 ~ 11354994 (-)
G1707413 NA non-coding downstream 28878 11348639 ~ 11350721 (-)
G1707411 NA non-coding downstream 32506 11346883 ~ 11347093 (-)
G1707439 NA non-coding upstream 46114 11429483 ~ 11430311 (-)
G1707448 NA non-coding upstream 86391 11469760 ~ 11470228 (-)
G1707592 NA non-coding upstream 155681 11539050 ~ 11539754 (-)
G1707603 NA non-coding upstream 173158 11556527 ~ 11556966 (-)
G1707610 NA non-coding upstream 188787 11572156 ~ 11572948 (-)
LOC110531911 LOC106577472 other downstream 205709 11139647 ~ 11207072 (-)
G1707317 NA other downstream 245809 11130215 ~ 11133790 (-)
G1707276 NA other downstream 358561 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 381945 10903853 ~ 11086469 (-)
prickle1b LOC106576510 other upstream 557760 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 737407 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1081858 12464677 ~ 12465880 (-)
G1708579 LOC106578766 other upstream 1466271 12849640 ~ 12858903 (-)

Expression


Co-expression Network