LOC118942878 (typh)


Basic Information

Item Value
gene id LOC118942878
gene name typh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11393032 ~ 11397690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956873.1
TGACTGTTTCCCCTTCTGATTCGTGATGGGTTGTGACTACTGTCGTAGTTAATGACTAACTGACCCGCTCCACCACTCACACCCATTGGTCACTAGTCCttccatacagacagacagagaggggtatTTGACCGGTGTGTGTTCTCAAGGTTGGAAGACATGACAGTGTTCAGGAGCAGCGTTCCGGTACAGTAAATTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGCTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGctgtgtgtcagtccgctgtgtgtcagtcagctgtgtttcagtccgctgtgtgtcagtccgctgTGTGTCAGTCCATTGTGTGTCAGTCAGCTGTGTTTCAGTCCATTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCATGAGCAGAGCACAGCCACTTTCCCAGAACACATCCGTAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACACTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAATGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCAATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGATGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAAACAGAACTGGAGACACAGGGCCACgGGACAGTGCTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCAGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAAGCCTCTGTGTCCTGCTCTTCACTCTCAAAGTCCTCTCTGATTCACCCACATAAAGTCATAAGATTCTGTGGAGACTGAATAGATGTTTACCGTTTCCAGGAACTGTGTGAAGGCAATTTCTGTTAAACCTTACTAATGTTTGTGTACTAAAATATCCTTCTTTAAGCCTCGGCATTGGGCTTGAGATGGTTAAAGAAATCAATATAAGATATAAAAGTGTGTGCACATTAATAGAGACATGTTGTAACTGTTCTGGGTGTGTAGAATGACCCCAGGATGTCTGGGAGCTCAGCCAATACTTGACAGGAACTGACTGGTTCCTCTTAAGTTAACTGGAGACAGAGTAAAGGTTTTATCCTGCACACCAATGATTGAACTATTGTTCTGTCTGGAGCCTGTTTCGGGgcaaaatattcatattttgtgtgtgtgtgtgtgtgtgtgaccagtacGACCATACATCATCTGGGCAGACAGTCAAAGGCGCTAGCTTGCCCAACTTGGGGGAACCGTTAAGctactcaaatcaaataaaagtttatttgtca
>XM_036956874.1
TGACTGTTTCCCCTTCTGATTCGTGATGGGTTGTGACTACTGTCGTAGTTAATGACTAACTGACCCGCTCCACCACTCACACCCATTGGTCACTAGTCCttccatacagacagacagagaggggtatTTGACCGGTGTGTGTTCTCAAGGTTGGAAGACATGACAGTGTTCAGGAGCAGCGTTCCGGTACAGTAAATTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGCTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGtccgctgtgtgtcagtcagctgtgtttcagtccgctgtgtgtcagtccgctgTGTGTCAGTCCATTGTGTGTCAGTCAGCTGTGTTTCAGTCCATTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCATGAGCAGAGCACAGCCACTTTCCCAGAACACATCCGTAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACACTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAATGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCAATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGATGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAAACAGAACTGGAGACACAGGGCCACgGGACAGTGCTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCAGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAAGCCTCTGTGTCCTGCTCTTCACTCTCAAAGTCCTCTCTGATTCACCCACATAAAGTCATAAGATTCTGTGGAGACTGAATAGATGTTTACCGTTTCCAGGAACTGTGTGAAGGCAATTTCTGTTAAACCTTACTAATGTTTGTGTACTAAAATATCCTTCTTTAAGCCTCGGCATTGGGCTTGAGATGGTTAAAGAAATCAATATAAGATATAAAAGTGTGTGCACATTAATAGAGACATGTTGTAACTGTTCTGGGTGTGTAGAATGACCCCAGGATGTCTGGGAGCTCAGCCAATACTTGACAGGAACTGACTGGTTCCTCTTAAGTTAACTGGAGACAGAGTAAAGGTTTTATCCTGCACACCAA
>XM_036956875.1
TGACTGTTTCCCCTTCTGATTCGTGATGGGTTGTGACTACTGTCGTAGTTAATGACTAACTGACCCGCTCCACCACTCACACCCATTGGTCACTAGTCCttccatacagacagacagagaggggtatTTGACCGGTGTGTGTTCTCAAGGTTGGAAGACATGACAGTGTTCAGGAGCAGCGTTCCGGTACAGTAAATTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGCTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGctgtgtttcagtccgctgtgtgtcagtccgctgTGTGTCAGTCCATTGTGTGTCAGTCAGCTGTGTTTCAGTCCATTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCATGAGCAGAGCACAGCCACTTTCCCAGAACACATCCGTAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACACTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAATGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCAATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGATGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAAACAGAACTGGAGACACAGGGCCACgGGACAGTGCTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCAGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAAGCCTCTGTGTCCTGCTCTTCACTCTCAAAGTCCTCTCTGATTCACCCACATAAAGTCATAAGATTCTGTGGAGACTGAATAGATGTTTACCGTTTCCAGGAACTGTGTGAAGGCAATTTCTGTTAAACCTTACTAATGTTTGTGTACTAAAATATCCTTCTTTAAGCCTCGGCATTGGGCTTGAGATGGTTAAAGAAATCAATATAAGATATAAAAGTGTGTGCACATTAATAGAGACATGTTGTAACTGTTCTGGGTGTGTAGAATGACCCCAGGATGTCTGGGAGCTCAGCCAATACTTGACAGGAACTGACTGGTTCCTCTTAAGTTAACTGGAGACAGAGTAAAGGTTTTATCCTGCACACCAA

Function

NR:

description
thymidine phosphorylase-like

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956873.1 False 2414 mRNA 0.51 11 11393032 11397690
XM_036956874.1 False 2223 mRNA 0.51 11 11393212 11397690
XM_036956875.1 True 2204 mRNA 0.51 11 11393212 11397690

Neighbor

gene id symbol gene type direction distance location
LOC118942879 typh coding downstream 9663 11379599 ~ 11383369 (-)
tymp typh coding downstream 22675 11366715 ~ 11370357 (-)
LOC110499803 LOC106609751 coding downstream 57249 11327273 ~ 11335783 (-)
LOC110515610 tsn8 coding downstream 88966 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 108880 11273417 ~ 11284152 (-)
LOC110500987 LOC106598106 coding upstream 24934 11422624 ~ 11426073 (-)
akap14 LOC106576576 coding upstream 34336 11432026 ~ 11433779 (-)
LOC118942880 LOC105024872 coding upstream 229945 11615310 ~ 11628453 (-)
LOC110499694 LOC106609794 coding upstream 453483 11851173 ~ 11861067 (-)
LOC110499697 LOC106576513 coding upstream 465684 11863374 ~ 11887584 (-)
G1707366 NA non-coding downstream 2213 11363157 ~ 11397594 (-)
G1707416 NA non-coding downstream 31974 11353330 ~ 11361058 (-)
G1707418 lsm8 non-coding downstream 34026 11356304 ~ 11359006 (-)
G1707415 NA non-coding downstream 38038 11354137 ~ 11354994 (-)
G1707413 NA non-coding downstream 42311 11348639 ~ 11350721 (-)
G1707439 NA non-coding upstream 31793 11429483 ~ 11430311 (-)
G1707448 NA non-coding upstream 72070 11469760 ~ 11470228 (-)
G1707592 NA non-coding upstream 141360 11539050 ~ 11539754 (-)
G1707603 NA non-coding upstream 158837 11556527 ~ 11556966 (-)
G1707610 NA non-coding upstream 174466 11572156 ~ 11572948 (-)
LOC110531911 LOC106577472 other downstream 219142 11139647 ~ 11207072 (-)
G1707317 NA other downstream 259242 11130215 ~ 11133790 (-)
G1707276 NA other downstream 371994 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 395378 10903853 ~ 11086469 (-)
prickle1b LOC106576510 other upstream 543439 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 723086 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1067537 12464677 ~ 12465880 (-)
G1708579 LOC106578766 other upstream 1451950 12849640 ~ 12858903 (-)

Expression


Co-expression Network