LOC110490628 (LOC106609728)


Basic Information

Item Value
gene id LOC110490628
gene name LOC106609728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11410451 ~ 11414640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564084.2
tatccaagcaattggaaaaaagtgttagaGTTTTGAAAAGTTTGCATTTTGACATTGGTTGTGTTTTGTGTATAGAGTTTTGGAAAATGACATCAAGGTTCCGAAATTAGTGCTAAAGTGATTGTAAATAACTGTAACATCTAAATGCAGAATGGCAGTTCCACCGCCAAGCGCAAGAGGGCAGTGTCATTTGGACACTGAGCCACAACTTACGTGCCGCAGCCATAGAGTAGAGGAAGACCGAAAGACTTCCGCGTACAGACGTTTAATGTATTTTCAGGTGAAATATGCCCCGTTACTGTGCTGTAAAACTTTGCAAAAATCGTGGAGGAACACCCTCTAAAGAAAACAAGAGAATAAGCTTTTACCCGTTCCCTTTGCAAGATGAGGTCAGGCTGCAGATATGGGTAGACAACATGAAGCGAGAGGAGTGGACCCCCAGCAGACACCAGTACCTGTGTAGTGAACATTTCACTGAGGACTGCTTTGACCTGCGATGGGGGATCCGGTACCTGAAACACACGGCCTTCCCTACCATCTTCCCTCACACACACGATGACGAAGATAAAACCGTTTCCACCAGTAAGAACACCACCAAGCCCAAAACCAGGATATGCAACGCCAACATTGAACTCATccgctccccctcccctcctggcAAGAATACACCTCTGATTCTGAAAAGGACAGTCAGAGTGGAACCAGTCATGGTGAGTGTCACTCCTGTCCCTAACCCTGAGGATGCCAGTGAATCTACGGTCACTACACTGTTATATGAAAGACCACTTGTTTCAGACACAGAGGCCTCTACTCCTAGTGAAATGGTCCTGGGGGAGGTGATGCTCTCAGAGACCCAGGCTGCAGTGTGTGAGGTGAACAGAGAACTATCTGGAGACAGTGGTGGGATACTGACAGCCTCATGCTTGAACCTGTCTGGTGAGACACAGACACTGCAGCAGCTGGATACACTGGACTCCACTGTGACTGTGCTCTGCTGTGAATCCGTCGTCCCTGTCGGTCGTTTCTCTGAATGTGAAGCCACGGTGGACGCCCTCCACGTGGCCCTCGGTCAGACGTTTAGGATCTTCCCTCTGGAGCTGCGGAGGGAGGAGTGGGTGGGAGACCGGGAGGAGGGCCCCGAGGAGGGGGGACACATCTCTGTGTACGAGCACTCCTACTCCAAACAGGACACGGACCAGGAACAGCTGTGGAGGAAGACAGCCAGCCTCCACACCAAGATCATGGAGCTGGATAGGAGAGAGGAAAGTACCATGGCTAAAATACGATCGCTTGAGAGCGAGATGGCACATCTGAAGAAGAGCAACGTTGttttaaaagaaaagcagaaATTACTAGAGGACTATATTACTTCTGCGTTGCTCTGATGTCTTAACCTTAGTGCTCTGTTTCCATTAACAACGGTCTTTCTAATGAGATGTATTTTGTCTAGTTATTACAGGGTTATTACAGGGTTATTACAGGGTTATTACAGTCTCAATCACTTGTACTTATTTATTATCTGTTTACATGTTTCACCAGAGTTATATTACTTACTAGTAGTGAAGCCCTTCTCAAAGAGCGTTGGCCAAGGCTACAATCTGTTCTACAGCACGTTCTAGCTCTTCCGTTTGTCTCCGCTAGGTGGCACTGTGTCTTTAGGACAGGCCCTGGCACGATGCACTACTGTTTCATGTTTCGACATCACTGACTGACATATTGTCAATATTAGTGGTGTAATTTGGAGCGTTTTAAGGGACGTGATATTCCCTATTCTTGTGCTACAGATGGCTGCTTGTTTTATTCAATGGTATAGTATTCGTATATCATATCAAATCTACTGTGCGGTCATACGGATCCTTACTGGTTATTAATGTATAAAAAGGTGTTTTTCACTAATGTTTTATGTTTATTTGGATAATAACAAGCAGCCTGCGGTACGTAAGTATCCGAGTGACTGAGACGACTACACCGTTTTAGGTGCATCTTCTTGGTTCTAATTAAATGGTTGAATAGGAAAATGTGCAATGCTTGCTCactattcaaaatatattttttatccaAGCAACTATTAAAAGCTTGACGTTTCGGGTCTTCGGCAATTTCCTTAAATAGACAGGTTCTGATAAATGAACCGGTTCTGGTGAAGACCATTGAAGGCCGAAACGTCAAGCTTTTAATACTTTCTCAAATAAAATCATATATTTGAATGTTAAACAAGCTTTGCACCTTTTTGATGATGTAACTGGTTGCTCCTTGACTCCCATTGGTTGGGCGTCCTCTACTTCTTTCCATAAAGAAATTAAATGGTCAACTGATTTCTCATCACTGAAAATGCAACACTGCGGTCCTCTTTCTTGATGGAAATGGCTTACATTACCTGCAACCCTTTTATCAATGCAATGACATCACACGTGTCATGATGAAGctgatggtgctttcaagacaactggggggggtcaaatcatgacgtcagtgagcTTCATGTTGGAGCTTTATGCAGCTGGGGGGGGTCTAGCTCCGACTCTTTCTGGAGCTCCGACCTTCCTACCTGTGGATCGCTGACATTATGATTTGACCTTATATTTTATGGAGTTCCCGGGCTtcagaggcctgagttcccgagCTTCAGAGGTCTGAGTTCCCGGGCTtcagaggcctgagttcccgggcttaagaggcctgagttcccgggcttcaga
>XM_021564085.2
tatccaagcaattggaaaaaagtgttagaGTTTTGAAAAGTTTGCATTTTGACATTGGTTGTGTTTTGTGTATAGAGTTTTGGAAAATGACATCAAGGTTCCGAAATTAGTGCTAAAGTGATTGTAAATAACTGTAACATCTAAATGCAGAATGGCAGTTCCACCGCCAAGCGCAAGAGGGCAGTGTCATTTGGACACTGAGCCACAACTTACGTGCCGCAGCCATAGAGTAGAGGAAGACCGAAAGACTTCCGCGTACAGACGTTTAATGTATTTTCAGGTGAAATATGCCCCGTTACTGTGCTGTAAAACTTTGCAAAAATCGTGGAGGAACACCCTCTAAAGAAAACAAGAGAATAAGCTTTTACCCGTACGGTTCCCTTTGCAAGATGAGGTCAGGCTGCAGATATGGGTAGACAACATGAAGCGAGAGGAGTGGACCCCCAGCAGACACCAGTACCTGTGTAGTGAACATTTCACTGAGGACTGCTTTGACCTGCGATGGGGGATCCGGTACCTGAAACACACGGCCTTCCCTACCATCTTCCCTCACACACACGATGACGAAGATAAAACCGTTTCCACCAGTAAGAACACCACCAAGCCCAAAACCAGGATATGCAACGCCAACATTGAACTCATccgctccccctcccctcctggcAAGAATACACCTCTGATTCTGAAAAGGACAGTCAGAGTGGAACCAGTCATGGTGAGTGTCACTCCTGTCCCTAACCCTGAGGATGCCAGTGAATCTACGGTCACTACACTGTTATATGAAAGACCACTTGTTTCAGACACAGAGGCCTCTACTCCTAGTGAAATGGTCCTGGGGGAGGTGATGCTCTCAGAGACCCAGGCTGCAGTGTGTGAGGTGAACAGAGAACTATCTGGAGACAGTGGTGGGATACTGACAGCCTCATGCTTGAACCTGTCTGGTGAGACACAGACACTGCAGCAGCTGGATACACTGGACTCCACTGTGACTGTGCTCTGCTGTGAATCCGTCGTCCCTGTCGGTCGTTTCTCTGAATGTGAAGCCACGGTGGACGCCCTCCACGTGGCCCTCGGTCAGACGTTTAGGATCTTCCCTCTGGAGCTGCGGAGGGAGGAGTGGGTGGGAGACCGGGAGGAGGGCCCCGAGGAGGGGGGACACATCTCTGTGTACGAGCACTCCTACTCCAAACAGGACACGGACCAGGAACAGCTGTGGAGGAAGACAGCCAGCCTCCACACCAAGATCATGGAGCTGGATAGGAGAGAGGAAAGTACCATGGCTAAAATACGATCGCTTGAGAGCGAGATGGCACATCTGAAGAAGAGCAACGTTGttttaaaagaaaagcagaaATTACTAGAGGACTATATTACTTCTGCGTTGCTCTGATGTCTTAACCTTAGTGCTCTGTTTCCATTAACAACGGTCTTTCTAATGAGATGTATTTTGTCTAGTTATTACAGGGTTATTACAGGGTTATTACAGGGTTATTACAGTCTCAATCACTTGTACTTATTTATTATCTGTTTACATGTTTCACCAGAGTTATATTACTTACTAGTAGTGAAGCCCTTCTCAAAGAGCGTTGGCCAAGGCTACAATCTGTTCTACAGCACGTTCTAGCTCTTCCGTTTGTCTCCGCTAGGTGGCACTGTGTCTTTAGGACAGGCCCTGGCACGATGCACTACTGTTTCATGTTTCGACATCACTGACTGACATATTGTCAATATTAGTGGTGTAATTTGGAGCGTTTTAAGGGACGTGATATTCCCTATTCTTGTGCTACAGATGGCTGCTTGTTTTATTCAATGGTATAGTATTCGTATATCATATCAAATCTACTGTGCGGTCATACGGATCCTTACTGGTTATTAATGTATAAAAAGGTGTTTTTCACTAATGTTTTATGTTTATTTGGATAATAACAAGCAGCCTGCGGTACGTAAGTATCCGAGTGACTGAGACGACTACACCGTTTTAGGTGCATCTTCTTGGTTCTAATTAAATGGTTGAATAGGAAAATGTGCAATGCTTGCTCactattcaaaatatattttttatccaAGCAACTATTAAAAGCTTGACGTTTCGGGTCTTCGGCAATTTCCTTAAATAGACAGGTTCTGATAAATGAACCGGTTCTGGTGAAGACCATTGAAGGCCGAAACGTCAAGCTTTTAATACTTTCTCAAATAAAATCATATATTTGAATGTTAAACAAGCTTTGCACCTTTTTGATGATGTAACTGGTTGCTCCTTGACTCCCATTGGTTGGGCGTCCTCTACTTCTTTCCATAAAGAAATTAAATGGTCAACTGATTTCTCATCACTGAAAATGCAACACTGCGGTCCTCTTTCTTGATGGAAATGGCTTACATTACCTGCAACCCTTTTATCAATGCAATGACATCACACGTGTCATGATGAAGctgatggtgctttcaagacaactggggggggtcaaatcatgacgtcagtgagcTTCATGTTGGAGCTTTATGCAGCTGGGGGGGGTCTAGCTCCGACTCTTTCTGGAGCTCCGACCTTCCTACCTGTGGATCGCTGACATTATGATTTGACCTTATATTTTATGGAGTTCCCGGGCTtcagaggcctgagttcccgagCTTCAGAGGTCTGAGTTCCCGGGCTtcagaggcctgagttcccgggcttaagaggcctgagttcccgggcttcagaggcc

Function

NR:

description
THAP domain-containing protein 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564084.2 False 2699 mRNA 0.46 3 11410451 11414636
XM_021564085.2 True 2708 mRNA 0.46 3 11410451 11414640

Neighbor

gene id symbol gene type direction distance location
LOC110518478 lsm8 coding upstream 51428 11355998 ~ 11359023 (+)
LOC110499792 LOC106595912 coding upstream 55456 11341636 ~ 11354995 (+)
LOC110499797 LOC106596128 coding upstream 93729 11311190 ~ 11316722 (+)
LOC118942876 fgl2 coding upstream 209502 11194545 ~ 11200949 (+)
LOC110531908 LOC106594049 coding upstream 271638 11103180 ~ 11138813 (+)
LOC110503752 LOC106576575 coding downstream 17644 11432284 ~ 11468646 (+)
nrcama LOC105024872 coding downstream 65140 11479780 ~ 11624211 (+)
cntn1b LOC106593403 coding downstream 215792 11630432 ~ 11660551 (+)
LOC110515322 LOC106576579 coding downstream 309786 11724426 ~ 11797595 (+)
pphln1 LOC106593546 coding downstream 476090 11890730 ~ 11931253 (+)
G1706710 NA non-coding upstream 6944 11386733 ~ 11403507 (+)
G1706662 NA non-coding upstream 12836 11396509 ~ 11397615 (+)
G1706708 NA non-coding upstream 26566 11370131 ~ 11383885 (+)
G1706678 NA non-coding upstream 75406 11298864 ~ 11335045 (+)
G1706694 NA non-coding upstream 83731 11326236 ~ 11326720 (+)
G1706723 NA non-coding downstream 4032 11418672 ~ 11419205 (+)
G1706735 NA non-coding downstream 58831 11473471 ~ 11474136 (+)
G1706737 NA non-coding downstream 62624 11477264 ~ 11477469 (+)
G1707481 NA non-coding downstream 123261 11537901 ~ 11539687 (+)
G1706711 NA other upstream 11163 11398040 ~ 11399288 (+)
G1706652 NA other upstream 137978 11270729 ~ 11272473 (+)
G1706152 NA other upstream 1275067 10134388 ~ 10135384 (+)
G1706090 NA other upstream 1492432 9915713 ~ 9918019 (+)
G1707493 LOC106609754 other downstream 153789 11568429 ~ 11568956 (+)
G1707462 NA other downstream 239261 11653901 ~ 11654623 (+)
G1707772 LOC106576513 other downstream 449022 11863662 ~ 11864573 (+)
G1708014 NA other downstream 833388 12248028 ~ 12250124 (+)
G1708323 NA other downstream 1163968 12578608 ~ 12584156 (+)

Expression


Co-expression Network