cntn1b (LOC106593403)


Basic Information

Item Value
gene id cntn1b
gene name LOC106593403
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11630432 ~ 11660551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956899.1
CATATTCTCTCCTCCAATAGAAAAGTTGAGACGCACGCTATGCTCCTCGCGCTTGGTTGTGGGACAATGCGCTTTTGATCCAGGTGTTCATGCAATGCGGATAATTTGAAATACCGTTTCATTCTATTTCACAGctcaTGTCCGTTACAGACCTCCGTCggtctgtgtgtcagtcagtagACAGTCATGGCTGTCACAGCCCTGGTCCTGCTAGttctctcctcttcactgtcaCACACTGAGGCCGTCTTGTTTGGTGAGCCCAGGATCTTTGGAGATGACGCTACTGGCTACGGTCCAATATTTGAAGAGGAGCCTCTGGATATCGTCTACACAAAGGAGTCCCCTGACAGACTTATCTCCATGAACTGTAGAGCACGGGCCAACCCTGcacccacatacagatgGAGGCGTGATAACTGGGAGATCAAGCTGATGGAGCTGCCCAATGAACACTACAGTCTGGTGGGAGGGAACCTCATCATAAACAACCCTGAAGAGAAGAAACATGCAGGGACCTACGTCTGTGTCGCCAAGAACGTGTACGGCACCGTCATCAGCAAGGAGGCCAAGGTCAAGTTTGGATACCTGGAGGAGTTcccagatgaagagagagacccTGTGACTGTGAAGGAGGGCCAGGGGGCCGTGCTGCTCTGTGCTCCTCCCAAGCGATGGCCAACTGAGGTGACGTTCCGTTGGATATACAACGAGTTTCCGGTCTTCCTCCACCCGGATAAGCGTCGCTTCGTCTCTCAGAGCACCGGGAATCTGTACATCTCCAAGGTGGAGGCGTCAGACGCAGGGAACTACTCCTGCTATGTGTTTAACCCACAGATTGGCAAGGGAGTCTACTCCAAGTTTATCCCTCTCATATCTACAGAAGAGACCCCAGAGAAGAGATACAAGGCCGACCTCGTAGTGAAGTTCCCTGACACCACAGCTATGCTCAACTACAACGTCACACTGGAGTGCTTCGCTCTGGGCAATCCGGCCCCTCATATCGTCTGGAGGAAGATAGGTGCTACCGACCTGCCTGCCAGCGCTCAGGTCAGCATGTCTGGAGCGCTGCTCCACCTCTACAACGTCCAGTATGAAGACTCAGCAGGGTACGAGTGTGAGGCCATCAACCAGAAATGGCAGGACTGGCATCAGGCGTGGCTCTATGTAGAGGCTGCTCCTGAGTGGGCTGTGACCATCAACAACACCCAGAAGGACGTAGGGTCAGAACACACCATGTCCTGTGTAGCTAATGGGAAGCCTGGCCCATACATTCGATGGCTCAAGGATGGATACTCGTATGGTAAAGGTGAGCTGAAGTTCTCCAGTCTGACATTTGAGGACTCTGGGATGTACCAGTGTATCGCTGAGAACTACTGGGGTATCATCTACGCCAGCGCTGAGCTACGTGTCATTGCTTGTGCCCCGACGTTTGAGTTGAACCCTGTGAAGAAGTATCTTCTAGGAGCTAACAACGGCCGTGTGGTCATAGAGTGTAAGCCCAGAGCTGCCCCCAGACCCAGGTTCACCTGGACCAAGGGAAAAGAAGTGCTCTTCAACAACTCACGTATCTCCATCATGTTCGATGGGAGTCTGGAGATCCTGAATGCCACCAGGAATGATGAGGGGGTGTACACCTGCTTAGCTGAGAATGACAGAGGGAAGGCCAACAGCACAGGGACTCTGACCATCACAGagGCGACACAGATCACAGTAGCCCCAGAGGACACTCAGGTGATGGTAGGAGAGGAGGTGCATCTGCAGTGCCAGGCCTCCTTTGACCCCAGTCTGGACATCACCTTCATCTGGTCTCTGGATTTCAGGGTCATCGACTTCTACCTAGAGTGGAAGCACTATGAACGCATCATGgATCGTGAGGACAGTGGAGAGCTGAAGATAATGAATGTCCAGTTGAGACACGAGGGACGCTACACCTGTACAGCCCAGACTGTCGTGGACAACGTCACCGCGTCAGCAGACCTCAAGGTCAAAGGTCTTCCTGCTCCTCCCGGTGGGGTGAGGGTTGAGGAGATCAGGGACACCTCGGTGAAGCTGGTGTGGAACCGAGGGGCCGACCATGGCAGCCTCATCCTTGGGTACACCATCCAGACCAGAGACTTCTACGCACTAACTGAAGTGGACTGGAGGGACGCATCCACCTcccctacGGCCCTGGATGGCATGTCAGTGATGGCTGATGTTGTGGACCTGTACCCCTGGATGGAGTATGAGTTCAGGGTCTATGCTACTAATGAGTTTGGAGACGGGGAGGCCAGCATCCCTTCAATGAAGATCAAAACCTGGGACGCAGTGCCTGTGGTGGCCCCGACCAACGTTGGAGGCTACGGGGGTAAAGATGGAGAGTTGATCATCACATGGACACCCGTACAGCCACAGTACTTCTACGGTAAGAAGTTTGGCTACGTTGTGGCCTTCAAGCCTCATGATGAGGTTGACTGGTGGTATGAGACCATATCAGACCCAGAGACACGACGCTACGTCCATCGAGACGCCTCTTTCAGGGTCAAGTCGAACGACTTCCAGGTCAGGGAGTTCCAGGTGAAGGTGAAGACGTTTAACTCCAAAGGAGATGGACCCTACAGCCTGTCGACCACTATCTACTACCCACGAGATGtCCCCTCTGAGTCTCCTACAGATGTATACTCCAGGCCTGTCTCGTCCCATGAAGCTCTGGTCTGGTGGATACCAGTCATGGACACTGGTACCGGCCTTCAGCAGTACATAGATGGATACCAGGTGAAGTACTGGAGGAAGTATGACGATACAGAGCCGGGGGCCAATCGTATCTTTGTGCCCGCCTCCATGAACCAGACCAGGCTGGAGAACATGCTGCCAGACTCGCACTACCTCATCGAGGTCAGAGCCTACAACGGAGCCGGTGTCGGCCCTCCCAGCGAACACTGCGAGATGTTCACCAAGAGAGCACCTCCAAGTGTGGCTCCCCAAATGTGGCGTTACATCAGCTACTCTGGCAAGTGGCTGTACGTGTGGTGGCACCACATCTCCTACGACTGGTTTGGCAATGAGTCCTTCCCACTATATTATAAGgtGATGTTCAGGAAGACTGGCTACATCACAGGGCCGATCTACATGACGGGCTGGCACTTCATTGACTTCCCCATGCCCCAGGTAGGGGACTACGAGCTGGAGGTCAGAGGTCGCTATGAGGGTGGAGACGGCCCCATCAGGAAGATCAGGCTTCAGGgtAAGGCGTCTTTCCTGAGACCCACTCTCAGTCTGGCCGCCATGCTACTGCTGGCCCTGTGCATCGTGGGATTGGGGATATAGAGACCCAGGACATGTCTGGGTGGACTGTGGGAGGTTTCACAGAAACAACTCTCACATCAACTTCCTACATCTCCTTAAGGACGTCCAATCTTTCCCCAACCTCTTACTGTCTGTATGTCTTCCCACAACAAAACAGAGCACCGTGTCACCATACAGAATGACCTGCCTAGCTGTAGAATCTACGAACGTTACTCTACTGTAGGACGTCCAATAAATCCTTTCTGATTAATTTATTGAACAGGGGCTGAAGGAATTGATCGGGTACAACAGAGGAATAGATGTTTTTCAATATGCCTTATGATGAATCATATTGTACAATCCTCCCAACATATTCTAGAACGAAATGTATAAGACAATGACGGACTGTAATCAACACGTACACTGTATGCCATTTGTAATGAGTGAACTGTAAAGGAATGATCAGAGTAAGATTGTATGTAGCTCAGACACCAACTACACAGCCTCTTCCTCCGTTTGACTCACCCAGCTGTTTTGGTTATTTAGTTTCCACACGTTTGCCATTTCAAGACGACACTAGATTAGAAGtcatgtgtgtttatgtttgaTTGGTTCGTTGGAGAATCATTTTCATTGTTCTGTATTGGTGCTGCTGTGAAAATAGATATTTAGTTTTGATTCCCTTTTCTGTTTATTTATCTCTTCAgattcgtacacacacacacactcggctcATATGGATATCGCTATAACCAACTCTGCAGAGATTGCTAGCTTTGAATGCTATTCTTTCTTACACTGTACTATACCACACCGTTAATTAGCTTCGTATTCGTAGTGAATTCTGTCTTCTAGATGCGCAAGCTAAAGCCATATCGCTTCGACAATGCCCCGGTATTTAGGCTTGTCCCGATTTTTGCACTGACGATGGCAGAATGTTTTAACTGAATGGTAACAAGAAATCAGGGTTGAAGAATATTGATGTGCtgctgttttattttattataggATTTGTTTTCCCTTGTTATGTATACGAGGATCATGCTGTAAACTCATTAAATAGAATACACATGAATGCTCCAGGATTGTAAGTATCATGTGAGCGTCACTACGAGG
>XM_036956900.1
CTCCAATAGAAAAGTTGAGACGCACGCTATGCTCCTCGCGCTTGGTTGTGGGACAATGCGCTTTTGATCCAGGTGTTCATGCAATGCGGATAATTTGAAATACCGTTTCATTCTATTTCACAGACCTCCGTCggtctgtgtgtcagtcagtagACAGTCATGGCTGTCACAGCCCTGGTCCTGCTAGttctctcctcttcactgtcaCACACTGAGGCCGTCTTGTTTGGTGAGCCCAGGATCTTTGGAGATGACGCTACTGGCTACGGTCCAATATTTGAAGAGGAGCCTCTGGATATCGTCTACACAAAGGAGTCCCCTGACAGACTTATCTCCATGAACTGTAGAGCACGGGCCAACCCTGcacccacatacagatgGAGGCGTGATAACTGGGAGATCAAGCTGATGGAGCTGCCCAATGAACACTACAGTCTGGTGGGAGGGAACCTCATCATAAACAACCCTGAAGAGAAGAAACATGCAGGGACCTACGTCTGTGTCGCCAAGAACGTGTACGGCACCGTCATCAGCAAGGAGGCCAAGGTCAAGTTTGGATACCTGGAGGAGTTcccagatgaagagagagacccTGTGACTGTGAAGGAGGGCCAGGGGGCCGTGCTGCTCTGTGCTCCTCCCAAGCGATGGCCAACTGAGGTGACGTTCCGTTGGATATACAACGAGTTTCCGGTCTTCCTCCACCCGGATAAGCGTCGCTTCGTCTCTCAGAGCACCGGGAATCTGTACATCTCCAAGGTGGAGGCGTCAGACGCAGGGAACTACTCCTGCTATGTGTTTAACCCACAGATTGGCAAGGGAGTCTACTCCAAGTTTATCCCTCTCATATCTACAGAAGAGACCCCAGAGAAGAGATACAAGGCCGACCTCGTAGTGAAGTTCCCTGACACCACAGCTATGCTCAACTACAACGTCACACTGGAGTGCTTCGCTCTGGGCAATCCGGCCCCTCATATCGTCTGGAGGAAGATAGGTGCTACCGACCTGCCTGCCAGCGCTCAGGTCAGCATGTCTGGAGCGCTGCTCCACCTCTACAACGTCCAGTATGAAGACTCAGCAGGGTACGAGTGTGAGGCCATCAACCAGAAATGGCAGGACTGGCATCAGGCGTGGCTCTATGTAGAGGCTGCTCCTGAGTGGGCTGTGACCATCAACAACACCCAGAAGGACGTAGGGTCAGAACACACCATGTCCTGTGTAGCTAATGGGAAGCCTGGCCCATACATTCGATGGCTCAAGGATGGATACTCGTATGGTAAAGGTGAGCTGAAGTTCTCCAGTCTGACATTTGAGGACTCTGGGATGTACCAGTGTATCGCTGAGAACTACTGGGGTATCATCTACGCCAGCGCTGAGCTACGTGTCATTGCTTGTGCCCCGACGTTTGAGTTGAACCCTGTGAAGAAGTATCTTCTAGGAGCTAACAACGGCCGTGTGGTCATAGAGTGTAAGCCCAGAGCTGCCCCCAGACCCAGGTTCACCTGGACCAAGGGAAAAGAAGTGCTCTTCAACAACTCACGTATCTCCATCATGTTCGATGGGAGTCTGGAGATCCTGAATGCCACCAGGAATGATGAGGGGGTGTACACCTGCTTAGCTGAGAATGACAGAGGGAAGGCCAACAGCACAGGGACTCTGACCATCACAGagGCGACACAGATCACAGTAGCCCCAGAGGACACTCAGGTGATGGTAGGAGAGGAGGTGCATCTGCAGTGCCAGGCCTCCTTTGACCCCAGTCTGGACATCACCTTCATCTGGTCTCTGGATTTCAGGGTCATCGACTTCTACCTAGAGTGGAAGCACTATGAACGCATCATGgATCGTGAGGACAGTGGAGAGCTGAAGATAATGAATGTCCAGTTGAGACACGAGGGACGCTACACCTGTACAGCCCAGACTGTCGTGGACAACGTCACCGCGTCAGCAGACCTCAAGGTCAAAGGTCTTCCTGCTCCTCCCGGTGGGGTGAGGGTTGAGGAGATCAGGGACACCTCGGTGAAGCTGGTGTGGAACCGAGGGGCCGACCATGGCAGCCTCATCCTTGGGTACACCATCCAGACCAGAGACTTCTACGCACTAACTGAAGTGGACTGGAGGGACGCATCCACCTcccctacGGCCCTGGATGGCATGTCAGTGATGGCTGATGTTGTGGACCTGTACCCCTGGATGGAGTATGAGTTCAGGGTCTATGCTACTAATGAGTTTGGAGACGGGGAGGCCAGCATCCCTTCAATGAAGATCAAAACCTGGGACGCAGTGCCTGTGGTGGCCCCGACCAACGTTGGAGGCTACGGGGGTAAAGATGGAGAGTTGATCATCACATGGACACCCGTACAGCCACAGTACTTCTACGGTAAGAAGTTTGGCTACGTTGTGGCCTTCAAGCCTCATGATGAGGTTGACTGGTGGTATGAGACCATATCAGACCCAGAGACACGACGCTACGTCCATCGAGACGCCTCTTTCAGGGTCAAGTCGAACGACTTCCAGGTCAGGGAGTTCCAGGTGAAGGTGAAGACGTTTAACTCCAAAGGAGATGGACCCTACAGCCTGTCGACCACTATCTACTACCCACGAGATGtCCCCTCTGAGTCTCCTACAGATGTATACTCCAGGCCTGTCTCGTCCCATGAAGCTCTGGTCTGGTGGATACCAGTCATGGACACTGGTACCGGCCTTCAGCAGTACATAGATGGATACCAGGTGAAGTACTGGAGGAAGTATGACGATACAGAGCCGGGGGCCAATCGTATCTTTGTGCCCGCCTCCATGAACCAGACCAGGCTGGAGAACATGCTGCCAGACTCGCACTACCTCATCGAGGTCAGAGCCTACAACGGAGCCGGTGTCGGCCCTCCCAGCGAACACTGCGAGATGTTCACCAAGAGAGCACCTCCAAGTGTGGCTCCCCAAATGTGGCGTTACATCAGCTACTCTGGCAAGTGGCTGTACGTGTGGTGGCACCACATCTCCTACGACTGGTTTGGCAATGAGTCCTTCCCACTATATTATAAGgtGATGTTCAGGAAGACTGGCTACATCACAGGGCCGATCTACATGACGGGCTGGCACTTCATTGACTTCCCCATGCCCCAGGTAGGGGACTACGAGCTGGAGGTCAGAGGTCGCTATGAGGGTGGAGACGGCCCCATCAGGAAGATCAGGCTTCAGGgtAAGGCGTCTTTCCTGAGACCCACTCTCAGTCTGGCCGCCATGCTACTGCTGGCCCTGTGCATCGTGGGATTGGGGATATAGAGACCCAGGACATGTCTGGGTGGACTGTGGGAGGTTTCACAGAAACAACTCTCACATCAACTTCCTACATCTCCTTAAGGACGTCCAATCTTTCCCCAACCTCTTACTGTCTGTATGTCTTCCCACAACAAAACAGAGCACCGTGTCACCATACAGAATGACCTGCCTAGCTGTAGAATCTACGAACGTTACTCTACTGTAGGACGTCCAATAAATCCTTTCTGATTAATTTATTGAACAGGGGCTGAAGGAATTGATCGGGTACAACAGAGGAATAGATGTTTTTCAATATGCCTTATGATGAATCATATTGTACAATCCTCCCAACATATTCTAGAACGAAATGTATAAGACAATGACGGACTGTAATCAACACGTACACTGTATGCCATTTGTAATGAGTGAACTGTAAAGGAATGATCAGAGTAAGATTGTATGTAGCTCAGACACCAACTACACAGCCTCTTCCTCCGTTTGACTCACCCAGCTGTTTTGGTTATTTAGTTTCCACACGTTTGCCATTTCAAGACGACACTAGATTAGAAGtcatgtgtgtttatgtttgaTTGGTTCGTTGGAGAATCATTTTCATTGTTCTGTATTGGTGCTGCTGTGAAAATAGATATTTAGTTTTGATTCCCTTTTCTGTTTATTTATCTCTTCAgattcgtacacacacacacactcggctcATATGGATATCGCTATAACCAACTCTGCAGAGATTGCTAGCTTTGAATGCTATTCTTTCTTACACTGTACTATACCACACCGTTAATTAGCTTCGTATTCGTAGTGAATTCTGTCTTCTAGATGCGCAAGCTAAAGCCATATCGCTTCGACAATGCCCCGGTATTTAGGCTTGTCCCGATTTTTGCACTGACGATGGCAGAATGTTTTAACTGAATGGTAACAAGAAATCAGGGTTGAAGAATATTGATGTGCtgctgttttattttattataggATTTGTTTTCCCTTGTTATGTATACGAGGATCATGCTGTAAACTCATTAAATAGAATACACATGAATGCTCCAGGATTGTAAGTATCATGTGAGCGTCACTACGAGG

Function

NR:

description
contactin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956899.1 False 4383 mRNA 0.50 23 11630432 11660551
XM_036956900.1 True 4356 mRNA 0.50 23 11630443 11660551

Neighbor

gene id symbol gene type direction distance location
nrcama LOC105024872 coding upstream 6221 11479780 ~ 11624211 (+)
LOC110503752 LOC106576575 coding upstream 161786 11432284 ~ 11468646 (+)
LOC110490628 LOC106609728 coding upstream 215792 11410451 ~ 11414640 (+)
LOC110518478 lsm8 coding upstream 271409 11355998 ~ 11359023 (+)
LOC110499792 LOC106595912 coding upstream 275437 11341636 ~ 11354995 (+)
LOC110515322 LOC106576579 coding downstream 63875 11724426 ~ 11797595 (+)
pphln1 LOC106593546 coding downstream 230179 11890730 ~ 11931253 (+)
LOC118943005 LOC106592567 coding downstream 708318 12368869 ~ 12384112 (+)
LOC118942882 LOC106609674 coding downstream 731078 12391629 ~ 12421266 (+)
LOC110490813 LOC106576520 coding downstream 737249 12397800 ~ 12401053 (+)
G1707509 NA non-coding upstream 7665 11618959 ~ 11622767 (+)
G1707504 NA non-coding upstream 22507 11607646 ~ 11607925 (+)
G1707497 NA non-coding upstream 50997 11578662 ~ 11579435 (+)
G1707495 NA non-coding upstream 56393 11573282 ~ 11574039 (+)
G1707494 NA non-coding upstream 56451 11569729 ~ 11573981 (+)
G1707515 NA non-coding downstream 2154 11662705 ~ 11663646 (+)
G1707522 NA non-coding downstream 8396 11668947 ~ 11669233 (+)
G1707527 NA non-coding downstream 21257 11681808 ~ 11683020 (+)
G1707533 NA non-coding downstream 36228 11696779 ~ 11697038 (+)
G1707535 NA non-coding downstream 40317 11700868 ~ 11701085 (+)
G1707493 LOC106609754 other upstream 61476 11568429 ~ 11568956 (+)
G1706711 NA other upstream 231144 11398040 ~ 11399288 (+)
G1706652 NA other upstream 357959 11270729 ~ 11272473 (+)
LOC110531908 LOC106594049 other upstream 514007 11103180 ~ 11138813 (+)
G1706152 NA other upstream 1495048 10134388 ~ 10135384 (+)
G1707772 LOC106576513 other downstream 203111 11863662 ~ 11864573 (+)
G1708014 NA other downstream 587477 12248028 ~ 12250124 (+)
G1708323 NA other downstream 918057 12578608 ~ 12584156 (+)
G1708367 NA other downstream 989135 12649686 ~ 12651577 (+)
G1708495 NA other downstream 1123656 12784207 ~ 12785502 (+)

Expression


Co-expression Network