LOC110515322 (LOC106576579)


Basic Information

Item Value
gene id LOC110515322
gene name LOC106576579
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11724426 ~ 11797595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956901.1
cacaacacacacacacactctgagaggactcccaacacaacacacacacactctgagaggactcccaacacaacacacaacacacacactctgagaggactcccaacacaacacacaacacacacactctgagagGACTCCCAACACAAGACACTTTGCTGGATCCTGGAGCTTGGAGCTTAGTATTGGTGTAtcggagtgtgtgtgtactgtggtaccgctgtgtgtgtgagggtgagaGAAGAGTGTCTTTCTAAGGACACCCTGATGAAAAACGGAGCCGGGTTTTCAGGCAGAGCCCCCTGTGTGATCCTCTGCATATCTACCCTGGGGGACCCACCGCGCACCGCCGCCGCCTGTCATCTCCACGACAACTAGAATGGGCTGCAATTTGTGCTCTTTACAGAAACGGGAGGAACACTACAAGCTGCTGTATGAGATTTCACAGGTGAATGGCAGGGACTACTCCAAGGCCAGCCATGACGAGATGGTGGAGGTCATCAGAAGAGACCCCATTGTGGTGCAGGTCGTCCGTCGCCATGGCAACCCCGCACACTCACATCAGACATTACAGGAAGTTCACATGGTGGACGTGTGCACGCAGACGGACATCACTTTTGAACACATCATGGCCCTGGCTAAGCTGAGGCCTGCTACTCCACCTGTACCCGACATCTGCCCCTTTCTGCTGTCAGACAGCTGTCACTCCATCCACACCATGGAGCATGAATTCTACGAGTGTCCAGAGTACCTCTCCAACACCCCAGCTGAAGTGGACAGGCCAGAGGAGTTTGAGTATGAGCAGGTAGAGCTCTGTCGGCTCAACAGTCAGGAGAAGTTGGGTCTGACGCTGTGCTATCGGACTGACGATGAAGAGGATACAGCTATCTACGTCAGCCACGTTGGACCCAACAGCATTGCTGCCAGGGACGGGCGCATTAGGGAAGGAGATCGAATATTACAGATCAATGGCTGTGACGTACAGGACAGGCAGGAAGCTTTCACTCTCCTGTCCAATGAGGAGTCCAGGAGTATCGTTCTCCTGGTGACCAGACCAGAGGAGGCGTGGCTGGATGAGGAGCACAATGAACTCCTAGAGGAGCTGAAGATGGAGATccttgaggagaggaggaacgagGAGGTGCagaagacaggaggaggagaggagcagGCCAAGCAGCTGGAGGAGGATGACGTCATGACAGACACGGCCACGTGTTCCTCCAATACTCAGGACAAAGACAGCGGCTTGGGGACGGGGCGCAACGAGGAGAGCTCCGAACAGGAAGTCCTCCTAGCCCGTGTCCACCGGAGGCCTGCCCAGGGCCTCAGAGACCGATGGAGGGCCAAGCATGGCCAGGGGCTGGGCAGGAGGGTGGTGGTACCCTCGGACACCCAGGGACCCAGGGGTCTGATCCAAGCCCAGGAGGGTGAGGGTGGAGTGGGGTTAGGACTGGAGTGTGACAGCCGCTTCAAGCAGCTCCTGGAGCTCAAGTGCCAGATCCGTAACAGCGGGGAGTGTGGTGTGTACTATAGCAGGAGAAGCACCATCGAGTGCAGCCTGACGGAGCAGAGTGGGGTGGGGGtcagtggtggtggagggatggaACAGGAGCTGAGGATGTTGAACGATGAGCTGAGGAGTATCGAGCTGGAGTGTCAGAGCATCATGCAGGCCCACCAGCTCCGTAAGAACCAAAGGGATCCCCCCTGCACCCCTATGTGCTCCCCAGGACGAAGCCCCAAACATGGGCGTGAGCAGCATGCCAAGCTGGCCGATATCAACGAGCATCCAGGGGAGAGGCAGTGGGACAGCGACAAGCTAAGGGGGGACAAGGACAGCTCCAGTGCCTATAACACGGCTGAGAGCGCCAGGTCCACTCCTCTAGGCATGGAGAGATCCCCAGACCACTCTCTACAGAGACGCATCAGCCTCACCAACCAGAAGAACCTCCGGAGCACCATGGCAGCCTCCGGCcagtccatctccatccccatcccagACAGAGAGCTCCTGAGTGAGACCTCGACCGGGACCACCACACACAGCCGACAGGATCCCAACCCCAGCCCTGGAACCACGGTCATCTCCAGCAGCCCCGACCAGTCCAACCCTTCCCCCTCCGAGTCAGACCCGGCCCTGCCTGCAGACGACGAGCGCTGCGACCACACCAGGAGCCACCGGGGGCCACGCAGGGTCCCTCCCTACCCGTCCCCTTACCACACAGCCCCCCAGCAGGGCGCCTCTCCAGCCCACGCCAGACACCTTCAGAGCTACATGCAGCAGCTCCTCCAGCAGACCTCCAGTCTGGAGACCtactcccagtcccagctcagccTCCTCAGCGTCTGCCGGGACCGCTCCACCCGCCCGGGGGAACCACGCCTCGAATGGAAGGTCAAAGTTCGAGCCGACGGGACGAAGTATGTAGCCCGGCGACCGGCGAGGGACCGGATTCTACGAGAACGGGCGCTGAGGATCAGGGAGGAGCGTAGTGGAGGGATGACCACGGATGACGACACTATGTCCGAGATGAAGATGGGGCGgtactggagtaaagaggagagaaagCAGCAGCTggccagagccagggagcagaggaggaggagggagtacaTGCAGAGGAGCCGGCTGGAGTGTCTCAGAGAGGGCCCTGGGAGCGGGGCCGAGGGCCGTAAAGAGGTCAACATCCTGGAACTCAGCCACAAGAAGATGATGAAGAAACGCAACAAGAAGATCCTGGATAACTGGATGACCATCCAGGAACTAATGAGTCACGGGGCCAGAGCACCTGAGGACCAGGGGACTAAACAAGTACACAATGCcttcctgtctgttactacagtatagGACCACAGCTCCGGGGTGAAGTTTCCCTGTacacacagatctaggatcatttAAAACTACCCGGGTCGGGCATTAACCATTTGGACGATAATGAAAAACTGACCTCAGAGCAGTGTCTAGGGACAACCttgccccatctctctctctctctctcatcgcgtCCATGCGGTATGACCTTACTTGCCTCGTTCAATGTGGCATTTTTTATAATGGGGAAAATCCTATATTTTTCACACTTTGTAAACTCAGTAACATTTTGTAAACTCTTTTTTTTACACTGGTTGTCGATGCACTGTGAAATGTTTTCTGCAGTTGCTCATTTATGATGTCATGAAACATGTTTCTATCAAAATCAGAATTCTCTGTAAACCACATCATCATCAATCAAGTCAAAGACATCGTGGTACGTTATCATGTTTGCATTGTTTATCCAGCATGGCAGTGATTAACTGTAGTGGTCAGAAATGTACCATATACCTgagaacagacactggactctTGTGCAGAATCCTCcttgtcttttactgaggatCGACCATATAACTGCACAACCCTCTAAGACCCATTCAATATGCCAAGCTGGCCTTGTGAGTCAAAACACCACTAAATCTCTGAAGGAGCTTTCATCATTTCTGAAAATGTCAACTCAGAGTTCTCTTGGAAAATTCTGAAGTCCTGAGAATGTCAATAATTCAGTGGTGTCTCAGAGGCTTTCAGTTTCCCAGtttaaaacagtcttgaaggaaagGTTCACTAGTCAACAGTTTCTCAGTTTATAACAGTCTTTCTTGAAGGAAGGGTTCACTAGTCAACAGTTTCTCTGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCATTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaagggaAGTTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaagggaAGTTTCACTAGTCAACAGTTTCTCCGTtttaaacagtcttgaaggaagggTTCACTAGTCAATAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTTTCCCCAACATCTCATTGCAAAAGTGATCTCAATGTTTCTCATCAATGGTAATTCAGTATCACTAATGAAAAAAGTGCATTTCTTACTGATTAAATAATTAATTCAAGTGATTTGATTGTTCCCCGAATACATTAAATGTAATTTATAAATACAAAACatatttattattttgtattgctTATTTTCAATTAGTGTACATTTATTAGTATATTCTGCATATTTTCGGACCTGTCTGAAGATCTCTTTGTATTGTCAAAAATAACACAAGTTATTGTCTCTAACGCATTATATTTCACCTAACAGTCCTTTCTGGCATTTGGTGGGGCTTCAAACGGGTGCTTTTCATTGTACACGGCTCTTCTATCTTTGCTCAGTGTTTATCGTCTTCTTTCCAGTAATCGGTAGTTGGTAACTTCATAGGCAGGTCAATGTGTGCTAATTGTGATTTTTGCAAAGGAAATGTGAATAAATTATTGTTTATCTTTATGAAA

Function

NR:

description
PREDICTED: PDZ domain-containing RING finger protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956901.1 True 5286 mRNA 0.49 8 11724426 11797595

Neighbor

gene id symbol gene type direction distance location
cntn1b LOC106593403 coding upstream 63875 11630432 ~ 11660551 (+)
nrcama LOC105024872 coding upstream 100215 11479780 ~ 11624211 (+)
LOC110503752 LOC106576575 coding upstream 255780 11432284 ~ 11468646 (+)
LOC110490628 LOC106609728 coding upstream 309786 11410451 ~ 11414640 (+)
LOC110518478 lsm8 coding upstream 365403 11355998 ~ 11359023 (+)
pphln1 LOC106593546 coding downstream 93135 11890730 ~ 11931253 (+)
LOC118943005 LOC106592567 coding downstream 571274 12368869 ~ 12384112 (+)
LOC118942882 LOC106609674 coding downstream 594034 12391629 ~ 12421266 (+)
LOC110490813 LOC106576520 coding downstream 600205 12397800 ~ 12401053 (+)
LOC118936492 LOC106609674 coding downstream 610958 12408553 ~ 12415265 (+)
G1707543 NA non-coding upstream 10124 11714015 ~ 11714302 (+)
G1707541 NA non-coding upstream 14325 11709878 ~ 11710101 (+)
G1707539 NA non-coding upstream 15329 11708862 ~ 11709097 (+)
G1707535 NA non-coding upstream 23341 11700868 ~ 11701085 (+)
G1707533 NA non-coding upstream 27388 11696779 ~ 11697038 (+)
G1707716 NA non-coding downstream 9271 11806866 ~ 11807317 (+)
G1707717 NA non-coding downstream 10716 11808311 ~ 11808721 (+)
G1707741 NA non-coding downstream 40010 11837605 ~ 11837808 (+)
G1707743 NA non-coding downstream 40808 11838403 ~ 11838656 (+)
G1707763 NA non-coding downstream 62493 11860088 ~ 11860296 (+)
G1707462 NA other upstream 69803 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 155470 11568429 ~ 11568956 (+)
G1706711 NA other upstream 325138 11398040 ~ 11399288 (+)
G1706652 NA other upstream 451953 11270729 ~ 11272473 (+)
LOC110531908 LOC106594049 other upstream 608001 11103180 ~ 11138813 (+)
G1707772 LOC106576513 other downstream 66067 11863662 ~ 11864573 (+)
G1708014 NA other downstream 450433 12248028 ~ 12250124 (+)
G1708323 NA other downstream 781013 12578608 ~ 12584156 (+)
G1708367 NA other downstream 852091 12649686 ~ 12651577 (+)
G1708495 NA other downstream 986612 12784207 ~ 12785502 (+)

Expression


Co-expression Network