prickle1b (LOC106576510)


Basic Information

Item Value
gene id prickle1b
gene name LOC106576510
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11933307 ~ 11954482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956919.1
GGGGAAGCTGGGGAAACTGACCATGGGCTTCCAGAGGAGCTCTACGTCAGACGATGACTCAGGTTGTGCCCTTGAGGAATACGCCTGGGTACCGCCTGGACTCAGACCTGAACAGGTACAgcagtatttctcctgtcttccGGAGGACAAGGTCCCCTACGTCAACAGTCCTGGAGAGAAACACAGGATCAGACAGCTGCTCTACCAGCTGCCGCCTCATGACAATGAGgtaCGGTACTGCCACTCTCtcagtgaggaggagaagagggagctCCACATGTTCAGtgtccagagaaagagagaggctctGGGGAGAGGAACCCCCAGGATGCTCCCCCGAGCCCTGCAACACACACTCTGTGAACATTGTGGTGAGGGCATTAGTGGAGGAGAGATGGCCATCTTTGCATCGCGGGCGGGTCCGGGGCCGTGCTGGCACCCAGCATGCTTTGCGTGCGCCACGTGTCAGGAGCTACTGGTAGACCTTATCTACTTCCACCAGGATGGAAAGATCCACTGTGGACGACACCACGCTGAGCTGCTGAAACCACGATGCTCAGCCTGCGATGAGATAATTTTTTCAGATGAGTGCACGGAGGCCGAGGGGCGTCACTGGCACATGAAGCACTTTGCCTGTTTCGAGTGTGAGACGGTGCTCGGCGGTCAGCGATACATCATGAAAGATGGCCGCCCCTACTGCTGCGGCTGCTTCGAGTCTCTGTACGCGGAGTACTGTGAAGCCTGCGGGGAGAATATAGGAGTGGACCATGCCCAGATGACCTACGAGGGTGTCCACTGGCACGCTACAGACACGTGTTTCTGCTGTGCCCAGTGTAAGAGCTCCCTGCTGGGCTGTCCCTTCCTTCCCAGGCAGGGCCGTATCTACTGCTCCAAGGCCTGCAGCCTGGGAGAGGACGTCTACGCCTCAGACTCCTCCGACTCGGTCTTCCAGTCCGCCGGCTCTCGTGAATCCCGCCAGAGTCACATGGGCAAGAGCAGCCACCCGGTGGCTGAACAGTGGAGGCAGTCCCAGCTCTTCAACCCGGTTGCAGTGGCTGACTATAACAAGACTCCTAGTCTATATGGAGACAGAGGGGACAGAGAAATGGATATTGTGGGTCAAAAGCTGTCCCACATGGGCTTCACCGAGGAGCACACCTGGAGGGACCGAGAGGACGCTCCGGAGGATCCAGAGGAGTGGGCCGAACACGAGGACTACATGACACAGCTCCTGCTCAAGTTCGGGGCCCGCCCCGGGGTGTTCCAGACGCAGCCTTCAGAGGAACCCGGCACCAGTAGGTCAGCCGAACCCTGGCTGAAGCCTGAGACTAAAccagcctccaccaccaccagtccCACGAACCAGAGCCACCTGCCTGAGATGTACTGGGCCCAGTCCCAGGATGGGCTGGTCAGTAAGAAGCACCTGCCTGAGATGTACTGGGCACAGTCCCAAGACGGGCTTGGGGATTCGGCTTACGGAAGCCATCCGGGCCCTGCTAGTGCCAGAAAGATCCATGATCTGGAGCTGGACCAGGGGCTGATGGACCAGAGGGTTAGCGCTGGGGGAGCAGGGTTATGGATGCTGGACCCCAGGCAGTGGTGTGAAGACTCTCTGGAGTGTATCACAGACGAGCTGAGGAAGACTGAGCACAGTGTTGGAGACTCCATGGACTCTCTAGCCCTCTCTAACATCACTGGTGCGTCAGCGGATGGAGACAGTAAGGAGGGTCAGATCCTCTACTCTCTCCACAACCTGCTGGACCCAGAAGACTGTGAGAAGATGAGCCTCATGGGCACCCTCAACTCCTCCATGCTCCACCGCAGCACCAACTCTCTGGATCACCAGGAGGGGGCAGCAgaccaggaggaagaggaggtgcgGAGGGGGGCGCAGAGGGTACAGGGGCCGGTGTCTTTgcccctcccacccctccctcctaAACAGGAGGTTCCACCACCTCACCTTCAGCTGCCAGTGTTGAGGAGGAGCAGGTCCCAGTCCACACGGCCACCTGGCCAGCAGATGGTCAAGTTCTCCGAGGACACGGTGGATAACGGGTCTTGCCAGAACCTGGCGGTGCGTCAGCCTCCTCAGAGTGAGAGGACGCGTCGGAGGGTGTACCACCACGAGGACCCCGAAAGGCCACACCGGCACCACCACGGCCGCCACCACAACCGTAGAACCCGCTCGGACAACGCTCTTAACCTCCTGCCTAAGGAACGGGTGCAGAGGCCCTACGAGGGACATGGTCTGAGTTCCCTTCAGGAACACCACGCGGCCCTCTTCAACCAACCTGGCCCTGGTGCTCACAGGCCACCAACCTATCCCCACACCACTTCAGACTACTCCCTCCAGGCTCGGGGTGACCGGGATCGCGACCGCTTCCTGGGTGGCCTGTACGCTGACGAGGAAGACTGGTGCTCCacctgctcctcctcttcctcagactctGAGGAGGAAGGCTACTTCCTGGGGCAGCTCATTCCCCAGCCCAGGGTTCCTAGAAGGTATCAATACTACACTGAAGACTTCCCAACACGTGTTACGGCCATGTCGCCCAACGACTCACGGACTAAATCCAGAAAGAAGGGTCACAGAGGCAAGAACTGCATCATTTCATAATCCAGATGTACATTCTCTGTTTTACTTCCAGCACTAATCATTTGTGGACAGGTGAGACCAGTTCTTTGTAGTTGGACTTGCTGGACAAAACATTGTCCATATTATTGGACTTCTTATTATGGGTCATGTCTAAAACTCAAACCATGCCagaagacctaaaaaaaaaaagacattttcTCCTTTTCTTTTTATAAAATTCAtcaaaaaacactttttttgtttttacattgtaTGATAAACCATTGAAAGTATTCCAGCAATACCATTGTGTGCATTAAATGGCAATTATGCACTATTGTTATTGCTGACAGGGAAAGGAATAGTTAGTAAAGTAGACTTCTAGGGACTAACCAACATAATTATTTAATAGTACAAAATAGGAATGtgtatattaagttaaaatgttAATACTGGTATTTTTATATCCCTGAGTTTTAACTAAGATTTTTCTGGTTTTGATGTAAACAAAGTTGGCGTAGGGAGGCGGGACAAGCTGTTGTCGTAGTAACAAGCAGAGCTATTTTGCACGCATCACTTGTCAACCAATCAAGGCTTTACAAAAAACAAACCAATTATTGCCAGAATACAAACCATCTCCTTACTCAAATCAAAATGCCATAATATCTGGTTTCTGGTAACAACTTACATGAAGTTGCTCTTAAACCTCTTAAACATCTCAACTTCAAAGTGATACCCTGAGTCTTCGCTGTATTCCAATGTTAATTCTCTAACACGCTTGTCCCTCAGGGTGTAAAATACAACGTAAAACCAACCTGTCCAGATTCAGTTACACTACAGAGCTCTTCTCCATACATGCCCTTTATACAGCGCAAGTCATTGTACCATGAATACTTAACGGTTATGTGATGTAAAGAAGCTTTTAATAAATATTCTTACCAAACG
>TU1956232
ACTGACCATGGGCTTCCAGAGGAGCTCTACGTCAGACGATGACTCAGGTTGTGCCCTTGAGGAATACGCCTGGGTACCGCCTGGACTCAGACCTGAACAGGTACAgcagtatttctcctgtcttccGGAGGACAAGGTCCCCTACGTCAACAGTCCTGGAGAGAAACACAGGATCAGACAGCTGCTCTACCAGCTGCCGCCTCATGACAATGAGgtaCGGTACTGCCACTCTCtcagtgaggaggagaagagggagctCCACATGTTCAGtgtccagagaaagagagaggctctGGGGAGAGGAACCCCCAGGA

Function

NR:

description
prickle-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956919.1 False 3529 mRNA 0.53 7 11933307 11954482
TU1956232 True 314 TUCP 0.56 3 11941129 11954467

Neighbor

gene id symbol gene type direction distance location
zcrb1 zcrb1 coding downstream 41795 11888564 ~ 11891512 (-)
LOC110499697 LOC106576513 coding downstream 45723 11863374 ~ 11887584 (-)
LOC110499694 LOC106609794 coding downstream 72240 11851173 ~ 11861067 (-)
LOC118942880 LOC105024872 coding downstream 305122 11615310 ~ 11628453 (-)
akap14 LOC106576576 coding downstream 499528 11432026 ~ 11433779 (-)
LOC110499744 LOC106609792 coding upstream 165358 12119840 ~ 12125727 (-)
LOC110500960 LOC106609793 coding upstream 172505 12102755 ~ 12145356 (-)
nell2b nel coding upstream 245918 12200400 ~ 12325740 (-)
LOC110512965 LOC106609709 coding upstream 510195 12464677 ~ 12465880 (-)
LOC110490697 LOC106576598 coding upstream 603444 12557926 ~ 12729749 (-)
G1707845 NA non-coding downstream 4462 11927342 ~ 11928845 (-)
G1707840 NA non-coding downstream 21476 11911632 ~ 11911831 (-)
G1707839 NA non-coding downstream 29253 11902578 ~ 11904054 (-)
G1707835 NA non-coding downstream 37411 11895645 ~ 11895896 (-)
G1707834 LOC106593546 non-coding downstream 38949 11894140 ~ 11894358 (-)
G1707858 NA non-coding upstream 325 11954807 ~ 11998512 (-)
G1707883 NA non-coding upstream 51159 12005641 ~ 12005855 (-)
G1707885 NA non-coding upstream 53784 12008266 ~ 12008710 (-)
G1707893 NA non-coding upstream 72045 12026527 ~ 12026789 (-)
G1707915 NA non-coding upstream 95580 12050062 ~ 12050275 (-)
G1707366 NA other downstream 535713 11363157 ~ 11397594 (-)
LOC110515612 LOC106592662 other downstream 649525 11273417 ~ 11284152 (-)
LOC110531911 LOC106577472 other downstream 759417 11139647 ~ 11207072 (-)
G1707317 NA other downstream 799517 11130215 ~ 11133790 (-)
G1708579 LOC106578766 other upstream 895158 12849640 ~ 12858903 (-)
LOC110500961 nav3 other upstream 1187226 13100668 ~ 13608900 (-)
G1709215 LOC106603265 other upstream 1692496 13646978 ~ 13678730 (-)

Expression


Co-expression Network