LOC110499744 (LOC106609792)


Basic Information

Item Value
gene id LOC110499744
gene name LOC106609792
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12119840 ~ 12125727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956920.1
GATGCAGAAGAATTAAAATTTCATGCTACAGTTGCACATGTGTTTGTGTATTAGACATTTATTGCTAGAAATATGTCGTTTTAGGACATTTATTGTTGCATTGATTTATAATTAGGTGATATAAGTGAAATGACAAATTGCTTAAAGACTACGATTTCTGCTGTTGGTTGAGCTTGGTAAACAGTAACGTATTTGAACagtgttagcaagctagctacaatGTTATAGTGTGCTATGGTGTCACATTGATTCATTTAGCACATTAAACATTTGTAGCACTGACACGTCACATTACATAACTGGACAGTCTATCTACCATGACTATGAAGGACGAAGCACCGAGTGTCCCTGAGTGCTACATCTCAGAACATGAAGGGTTCTATGGAACCATCAAGAACTTCACCAGAGACTTTGTAGTCACAGAGATAGACATCCATGGCCAGATGGTCACTAAACCCAGTTTATCTGATGTTCCTCAATCATCCAACATTACTGAGGCATGCCCAGGTGCCAAGTCTGAAGGAAAGACAAATATTATTAGCCCAAAACATCAACACAACCTCAAAGAAGAGAATTCAGAACCTGGACCCGGTCAGAATGGTGACATCACATCCACCGCCAGCCAAGACTGTTTTGACCTGAGCATAATACTGGGTCAGGCTGTCTGTGAAGAGCTAGAGCAGTTCACTGCTTTATTGAGAGAGATGTCATCAAGTCCAAATGAGGTCGTTGAGAAGAAGCTGGCCAACCAAGAATCATCCAATGGCAGTGAGAAGAAGATGGCCAATCAAGAGTTATCCCTGGGTTCATTCCCAGACAAACACCAAAGGGCTAATGTCCACCGCGCTGTCCGACACAGCTTTCCCTTCCTGTTGACAGTAACCAACCAATCAGAGATCAGGGTTAAGGAGGACCCTGACTTTAAGCTCCTATCAGGTTTGGTCTCAGAGGAGGAGGCCGAAGACTTTATCAGGTTCATCGACACCAAGATGCCTAATTCTGTGTACACATTCAGGAGTGATGACAGTAAGGAGCACAGGACGGCAGTGCACCACTTCCTCAGTAGACGGTTTGGTAAACTGGTGGAGACCAAGAGCTTCAGTGACCAGCAGCAGAAGACTACGGCCATTACTGTCAggttgagagaaagagggaaacccAGGAAGAGGACGGCTGATGACAGTAAAGAGGAAGAGGTCTATACAGCGTTCACTCTGAAGAAGGAGAACCTAGAGACTCTGGAGGCTATCAGCTACATGGCAGCTGTCCTGGGGGTGCTGCCCTCTGACTTCACCTACGCTGGCATTAAGGACAAGAGGGCCGTCACCTACCAGTCCATGGTGGTCAAGAAGATCTCACCACAACGGCTGAGAGAGAAGGCCAGTGAGTTTGAGAAGAGGGGCGTGGTCCTCTCCTCCGTCCGCTCCGTCTCTGAGCCTCTTCATCTGGGTAGACTCCAGGGGAACCACTTTGACCTAGTGGTACGGGATCTGAGGTCACACCAGGGTCATGGCACACTGATGGAGCTGGACTCACGGGTGCAGGAGGCTGTGGAGAACGTAAAGGTCAAGGGGTTTGTGAACTACTATGGACCTCAGAGGTTTGGGACTGGACAGAGTGTTCAGTCTGACCGCATCGGACTGGCCCTGCTCAAAGAGGAAATGGTGGCAGCTGTCCGTCTGTTTTTCACACCAGAAGAGGGTGATGACCCTCAGAGCGTTGCCAAGAGACACTTCCTCCAGACTGATAATGCCAAGGAGGCCCTGTTTCTGATGCCCATGTCCAAGGCCAGAGAGAGGATGATGCTGAGGGCCCTACATCGCTATGGGACGGGCCCAGAGGGCTGCACCCGTGCCTGGCTCAGCCTGCCCCATGGGATGAGGGTCTTCTACCCCCACGCATACTGCAGCCGGGTCTGGAACGAGGCGGCTGCACACAGGCTGACCACGCTGGGCCACAGGGCCAGGCAGGGAGATCTGGTCtggaagcagaggagagaggaggggatagaggcgGGAGAAACCAGCTTACCTCAGATTCATGTTGTTACTgctgcagaggaggaggaggaagtctACTCACTAGGACagGTGGTTCTTCCCATGCTTGGCAACACTGTGAAGTACCCAGAGAACCCTGTAGGGGGCTGGTACCAGGAGAGACTGGCGAGGGATGGACTACAGAGCTGTCGTTTCAGAGTCACTCCTCTCAAACTGAACCTCCCTGGCTGCTACCGCCCCttactggccatcccacatagccTGACCTACAGGCTGGAGCAGGGCCAGAGAGCTGGGGAGAGGCAACAGGAGTGGAATGGAAAGTCACAGGCTAGTGGAGCGGTACCACAGCACCCTGACACAGACACACCTAGACCTGGAGGtctggagaggcagagaggaggggagagcgtGCAGGGTAATGGAGAGGGGGAGTCAACGGTGAAGTACCCTGACACAGACACACCTAGTTTGACGTTGAACTTTGACCTGGACTCTTCCTGCTACGCCACTGTCTGCCTCAGAGAGGTCATGAAATGTGACCCTTAAACTGGAGTCTCAGATGTTGTATGTACTACTGTGTGTACAGTATTTTGATTAATATTGTACTTTGTACACAGTATGGCCTCTTGTGTACATGTAGGGTACTGCtacagtattgtgttgtgtacacaTTATGGCCTCTTGTGTACATGTAGGGTACTGCTACAGTATTGTGTTTTGTACACAGTATGGCCTCTTGTGTACATGTAGGGTACTGATACAGTATTGTGTTTTGTACACATTATAGCCTCTTGTGTACTTGTaggatactgctacagtattatgttttgtacacagtatggcctcttgtgtacatgtagggtactgctacagtattgtgttgtgtacacaTTATAGCCTCTTGTGTACATGTAGGGTACTGCTACAGTATTGTGTTTTGTACACATTATGGCCTCTTGTGTACTTGTaggatactgctacagtattgtgTTTTGTACACATTATGGCTTCTTGTGTACTTGTaggatactgctacagtattgtgttgtgtacacattatggcctcttgtgtacttgtaggatactgctacagtattgtgTTTTGTACACATTATGGCCTCTTGTGTACTTGTAGGGTACTGCTACAGTATTGTGTTTTGTACACATTATGGCCTCTTGTGTACTTGTAGGATACTGCTACAGTGTTGTGTACACAGTATGGCCTCTTGTGTACTTGTAGGATACTGCTACAGTGTTGTGTACACAGTATGGCCTCTTGTGTACTTGTAGGATacttctacagtattgtgttgtgtacacagtatggcctcttgtgtacatgtaggatactgctacagtattgtgttgtgtacacagtatggcctcttgtgtacatgtaggatactgctacagtattgtgttgtgtacacagtatggcctcttgt
>TU1956512
AACGAGGCGGCTGCACACAGGCTGACCACGCTGGGCCACAGGGCCAGGCAGGGAGATCTGGTCtggaagcagaggagagaggaggggatagaggcgGGAGAAACCAGCTTACCTCAGATTCATGTTGTTACTgctgcagaggaggaggaggaagtctACTCACTAGGACagGTGGTTCTTCCCATGCTTGGCAACACTGTGAAGTACCCAGAGAACCCTGTAGGGGGCTGGTACCAGGAGAGACTGGCGAGGGATGGACTACAGAGCTGTCGTTTCAGAGTCACTCCTCTCAAACTGAACCTCCCTGGCTGCTACCGCCCCttactggccatcccacatagccTGACCTACAGGCTGGAGCAGGGCCAGAGAGCTGGGGAGAGGCAACAGGAGTGGAATGGAAAGTCACAGGCTAGTGGAGCGGTACCACAGCACCCTGACACAGACACACCTAGACCTGGAGGtctggagaggcagagaggaggggagagcgtGCAGGGTAATGGAGAGGGGGAGTCAACGGTGAAGTACCCTGACACAGACACACCTAGTTTGACGTTGAACTTTGACCTGGACTCTTCCTGCTACGCCAC
>TU1956516
CTCTTCATCTGGGTAGACTCCAGGGGAACCACTTTGACCTAGTGGTACGGGATCTGAGGTCACACCAGGGTCATGGCACACTGATGGAGCTGGACTCACGGGTGCAGGAGGCTGTGGAGAACGTAAAGGTCAAGGGGTTTGTGAACTACTATGGACCTCAGAGGTTTGGGACTGGACAGAGTGTTCAGTCTGACCGCATCGGACTGGCCCTGCTCAAAGAGGAAATGGT

Function

NR:

description
pseudouridylate synthase 7 homolog-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956920.1 False 3448 mRNA 0.48 10 12119840 12125727
TU1956512 False 593 TUCP 0.58 3 12120776 12121782
TU1956516 True 229 lncRNA 0.55 2 12122623 12123137

Neighbor

gene id symbol gene type direction distance location
prickle1b LOC106576510 coding downstream 165358 11933307 ~ 11954482 (-)
zcrb1 zcrb1 coding downstream 228328 11888564 ~ 11891512 (-)
LOC110499697 LOC106576513 coding downstream 232256 11863374 ~ 11887584 (-)
LOC110499694 LOC106609794 coding downstream 258773 11851173 ~ 11861067 (-)
LOC118942880 LOC105024872 coding downstream 491655 11615310 ~ 11628453 (-)
LOC110500960 LOC106609793 coding upstream 1260 12102755 ~ 12145356 (-)
nell2b nel coding upstream 74673 12200400 ~ 12325740 (-)
LOC110512965 LOC106609709 coding upstream 338950 12464677 ~ 12465880 (-)
LOC110490697 LOC106576598 coding upstream 432199 12557926 ~ 12729749 (-)
LOC118942884 LOC106576594 coding upstream 840172 12965899 ~ 12970941 (-)
G1707949 NA non-coding downstream 18402 12101128 ~ 12101438 (-)
G1707940 NA non-coding downstream 39476 12080149 ~ 12080364 (-)
G1707924 NA non-coding downstream 54440 12065053 ~ 12065400 (-)
G1707915 NA non-coding downstream 69565 12050062 ~ 12050275 (-)
G1707893 NA non-coding downstream 93051 12026527 ~ 12026789 (-)
G1708059 NA non-coding upstream 21663 12147390 ~ 12147678 (-)
G1708069 NA non-coding upstream 48719 12174446 ~ 12174734 (-)
G1708072 NA non-coding upstream 54148 12179875 ~ 12180799 (-)
G1708129 NA non-coding upstream 192280 12318007 ~ 12318797 (-)
G1708147 NA non-coding upstream 216980 12342707 ~ 12343246 (-)
G1707366 NA other downstream 722246 11363157 ~ 11397594 (-)
LOC110515612 LOC106592662 other downstream 836058 11273417 ~ 11284152 (-)
LOC110531911 LOC106577472 other downstream 945950 11139647 ~ 11207072 (-)
G1708579 LOC106578766 other upstream 723913 12849640 ~ 12858903 (-)
LOC110500961 nav3 other upstream 1015981 13100668 ~ 13608900 (-)
G1709215 LOC106603265 other upstream 1521251 13646978 ~ 13678730 (-)
LOC110499771 LOC106609768 other upstream 2015761 14141473 ~ 14161581 (-)
LOC110499744 LOC106609792 other downstream 841 12119840 ~ 12125727 (-)

Expression


Co-expression Network