LOC110490813 (LOC106576520)


Basic Information

Item Value
gene id LOC110490813
gene name LOC106576520
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12397800 ~ 12401053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956925.1
aaacagaacaaaacaatACGGAAGTAAAACGGTAGGGAGAGTTTGTTTGGGTTTGTTTGTCCTCGTCCGTGAAAACATACATGCTGAATACCCAACTTTCAGTCGACTGAAACATGTCTAGACTCCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACCGCGGCAGCTGTGGAGATTTTCGGGGCATTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGTTACGGAGACTGCTGCGGATCACACCGGAGATAAAACTATGTAGGATAGattccctgcagctctctgtctctgaagaGGTTCTCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGAGCTTCcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcaaGGGCTGGAGGCTGATTTCAAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGACCAGGAGGACCCATTTCAGTCCTTCACTTCTCCCCAAACCCAGACTGTGGAGAACAGAGAGCGTGACCCTAAACAAGTGGATCTCACACCTTCTGTTACTGTGACCCACCTTAAGGGCCTCTACATTCCCTGTGACCCTCCAGAGGATCAAAACAATGCCTCCAGCCACAGCTCAGCCGTAAGCAGTGACCCCGTAGGACTTGACAGCAGCCCGCGATTGGATCCCAGCCCATCGATGGCGGAACATTGTTCCAGCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAAAGTTTGCTCTGAAAGCTGCCCTGCAGAGGCATATGACTCTCTACAAGAAGAGACTCCGTGAATGCAGTTTCTGCAGAAAACGCTGCACCTCCACCTGTAAACTAAAGGCCCATATCCGCCTCTGTCACAGTGGGAGACCCTGCACCTGCCCTGTTTGTGGCAAGACCTTCAAACTCAAAGGATATCTGTCCAAGCACATGAGGATTCACACAGGAGTgggagagaaaccatttagctgtggagactgtgggaaaagcttcaatTTGAAGGGGAACCTAAAGAACCATATGTTGACTCACACAGGAGATAAATCATTTAGCTGTGgagactgtgggaaaagcttcatTCATAAGTGGAACCTAAGGAGCCATATgctgactcacacaggagagaaaccatttagctgtggagaatgtgggaaaagcttcaatcAGGAGGGGAACCTACGGAACCATAAACGGACTCACACAGGAGGGAAACCATTTAGCTGTGATAACTGTGGGAAAAGCTTTAATCAGAACGGGTCCCTAAAGAAGCATAgactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcAGAAGGGGAACCTAAGAAACCATAAActcactcacacaggagagaaaccatttagctgtgaTGATTGCGGGAAAAGCTTCACTCAAAAGTCTAACTTACTGACGCATGTGAAAAAAATACACAAAGGAGGAAAACAGGATTAAAACTGAAAGAAAGAACATTATGACAAAGATCTATTTAGTCACAAGATGAACATAAAAAGTCAGGATGTGGACAATTCTGAGTacacgctcagacacacataGCTGGAATAAGTAAATGAAGTctgagagaatagtcagattaactgatGACTAAAATATTAGTGCAGATGGTATTATTTTGTTACGTGCATAGATGTGTTATAGGTAATGAATGTGTAGGGAACTTCTGAAATTCTACAGATTTTGTGGCACAGCAGGAATACACACAAAccaaaaagtaaaataatggaattaaggaatatataagTATTAGGATGAGCCATGTCGGAGTGGCGTtgag
>XM_036956926.1
aaacagaacaaaacaatACGGAAGTAAAACGGTAGGGAGAGTTTGTTTGGGTTTGTTTGTCCTCGTCCGTGAAAACATACATGCTGAATACCCAACTTTCAGTCGACTGAAACATGTCTAGACTCCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACCGCGGCAGCTGTGGAGATTTTCGGGGCATTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGTTACGGAGACTGCTGCGGATCACACCGGAGATAAAACTATattccctgcagctctctgtctctgaagaGGTTCTCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGAGCTTCcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcaaGGGCTGGAGGCTGATTTCAAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGACCAGGAGGACCCATTTCAGTCCTTCACTTCTCCCCAAACCCAGACTGTGGAGAACAGAGAGCGTGACCCTAAACAAGTGGATCTCACACCTTCTGTTACTGTGACCCACCTTAAGGGCCTCTACATTCCCTGTGACCCTCCAGAGGATCAAAACAATGCCTCCAGCCACAGCTCAGCCGTAAGCAGTGACCCCGTAGGACTTGACAGCAGCCCGCGATTGGATCCCAGCCCATCGATGGCGGAACATTGTTCCAGCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAAAGTTTGCTCTGAAAGCTGCCCTGCAGAGGCATATGACTCTCTACAAGAAGAGACTCCGTGAATGCAGTTTCTGCAGAAAACGCTGCACCTCCACCTGTAAACTAAAGGCCCATATCCGCCTCTGTCACAGTGGGAGACCCTGCACCTGCCCTGTTTGTGGCAAGACCTTCAAACTCAAAGGATATCTGTCCAAGCACATGAGGATTCACACAGGAGTgggagagaaaccatttagctgtggagactgtgggaaaagcttcaatTTGAAGGGGAACCTAAAGAACCATATGTTGACTCACACAGGAGATAAATCATTTAGCTGTGgagactgtgggaaaagcttcatTCATAAGTGGAACCTAAGGAGCCATATgctgactcacacaggagagaaaccatttagctgtggagaatgtgggaaaagcttcaatcAGGAGGGGAACCTACGGAACCATAAACGGACTCACACAGGAGGGAAACCATTTAGCTGTGATAACTGTGGGAAAAGCTTTAATCAGAACGGGTCCCTAAAGAAGCATAgactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcAGAAGGGGAACCTAAGAAACCATAAActcactcacacaggagagaaaccatttagctgtgaTGATTGCGGGAAAAGCTTCACTCAAAAGTCTAACTTACTGACGCATGTGAAAAAAATACACAAAGGAGGAAAACAGGATTAAAACTGAAAGAAAGAACATTATGACAAAGATCTATTTAGTCACAAGATGAACATAAAAAGTCAGGATGTGGACAATTCTGAGTacacgctcagacacacataGCTGGAATAAGTAAATGAAGTctgagagaatagtcagattaactgatGACTAAAATATTAGTGCAGATGGTATTATTTTGTTACGTGCATAGATGTGTTATAGGTAATGAATGTGTAGGGAACTTCTGAAATTCTACAGATTTTGTGGCACAGCAGGAATACACACAAAccaaaaagtaaaataatggaattaaggaatatataagTATTAGGATGAGCCATGTCGGAGTGGCGTtgag

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956925.1 False 1869 mRNA 0.46 2 12397800 12401053
XM_036956926.1 True 1860 mRNA 0.46 2 12397800 12401053

Neighbor

gene id symbol gene type direction distance location
LOC118943005 LOC106592567 coding upstream 13688 12368869 ~ 12384112 (+)
pphln1 LOC106593546 coding upstream 466547 11890730 ~ 11931253 (+)
LOC110515322 LOC106576579 coding upstream 600205 11724426 ~ 11797595 (+)
cntn1b LOC106593403 coding upstream 737249 11630432 ~ 11660551 (+)
nrcama LOC105024872 coding upstream 773589 11479780 ~ 11624211 (+)
LOC118936492 LOC106609674 coding downstream 7500 12408553 ~ 12415265 (+)
LOC110490708 LOC106576521 coding downstream 16383 12417436 ~ 12419416 (+)
LOC110490703 LOC106594938 coding downstream 20580 12421633 ~ 12448308 (+)
LOC110490810 LOC106576597 coding downstream 343947 12745000 ~ 12825754 (+)
LOC110516535 LOC106576596 coding downstream 428116 12829169 ~ 12837237 (+)
LOC118942882 LOC106609674 non-coding upstream 1960 12391629 ~ 12421266 (+)
G1708165 NA non-coding upstream 32289 12361470 ~ 12365511 (+)
G1708160 NA non-coding upstream 41987 12355378 ~ 12355813 (+)
G1708135 NA non-coding upstream 55588 12333933 ~ 12342212 (+)
G1707971 NA non-coding upstream 232499 12165035 ~ 12165301 (+)
G1708247 NA non-coding downstream 55799 12456852 ~ 12457169 (+)
G1708250 NA non-coding downstream 58914 12459967 ~ 12460208 (+)
G1708257 NA non-coding downstream 67337 12468390 ~ 12468614 (+)
G1708268 NA non-coding downstream 82889 12483942 ~ 12484305 (+)
G1708271 NA non-coding downstream 86626 12487679 ~ 12488026 (+)
G1708014 NA other upstream 147676 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 533227 11863662 ~ 11864573 (+)
G1707462 NA other upstream 743177 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 828844 11568429 ~ 11568956 (+)
G1706711 NA other upstream 998512 11398040 ~ 11399288 (+)
G1708323 NA other downstream 177555 12578608 ~ 12584156 (+)
G1708367 NA other downstream 248633 12649686 ~ 12651577 (+)
G1708495 NA other downstream 383154 12784207 ~ 12785502 (+)
G1708635 NA other downstream 550632 12951685 ~ 12952515 (+)

Expression


Co-expression Network