cmas (cmas)


Basic Information

Item Value
gene id cmas
gene name cmas
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12867488 ~ 12885849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124190.1
CCTTCACACAGTTTAAGCCGTAGTAGATCATGTAAACTAAGtacgtagctagctagttacagtgAGTTAGAAAGCAAGGTGCTAGATACTTCAGACGACTGCTATCCATCGCTACCGCTACAAGACTATTGCCTGCCCACCCGGCTACTGATCCTTTCAATGGCTGCTGCTAGAAAACGAACGCTATCGGACATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCAGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTGAACTTAGACCCGTGTAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTACATTTATACCAGAGCGACGATAGAGAGAGGCCTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCCTGATCTCATCTAGTGAGGacctcctgaccaaggccctggcTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAGGACATCCAGGGTGAGGTCACAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTTCCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCAGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCTACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGT
>TU1957035
GCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCTACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAGATCCATTCTTAACTGTAGAATGTGTTCTAAAG

Function

symbol description
cmas Predicted to enable N-acylneuraminate cytidylyltransferase activity. Predicted to be involved in N-acetylneuraminate metabolic process. Located in membrane and nucleus.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124190.1 False 1480 mRNA 0.54 8 12867488 12885770
TU1957035 True 206 lncRNA 0.42 1 12885644 12885849

Neighbor

gene id symbol gene type direction distance location
LOC118942883 LOC106596479 coding upstream 7120 12844103 ~ 12860368 (+)
LOC118943029 NA coding upstream 24966 12771599 ~ 12842545 (+)
LOC110516535 LOC106576596 coding upstream 30251 12829169 ~ 12837237 (+)
LOC110490810 LOC106576597 coding upstream 41734 12745000 ~ 12825754 (+)
LOC110490703 LOC106594938 coding upstream 419180 12421633 ~ 12448308 (+)
LOC118942885 LOC106576602 coding downstream 85143 12970913 ~ 12974793 (+)
LOC110490630 LOC106609716 coding downstream 129396 13015166 ~ 13034215 (+)
LOC110490636 LOC106576583 coding downstream 151462 13037232 ~ 13051496 (+)
LOC110490642 LOC106597584 coding downstream 166077 13051847 ~ 13058457 (+)
LOC110518396 LOC106609712 coding downstream 172935 13058705 ~ 13066794 (+)
G1708492 NA non-coding upstream 96101 12770722 ~ 12771387 (+)
G1708410 NA non-coding upstream 134546 12712997 ~ 12732942 (+)
G1708602 NA non-coding downstream 15513 12901283 ~ 12907083 (+)
G1708643 NA non-coding downstream 74691 12960461 ~ 12960856 (+)
G1708646 NA non-coding downstream 78771 12964541 ~ 12964769 (+)
G1708650 NA non-coding downstream 93361 12979131 ~ 12979348 (+)
G1708651 NA non-coding downstream 96008 12981778 ~ 12982204 (+)
G1708495 NA other upstream 81986 12784207 ~ 12785502 (+)
G1708367 NA other upstream 215911 12649686 ~ 12651577 (+)
G1708323 NA other upstream 283332 12578608 ~ 12584156 (+)
G1708014 NA other upstream 617364 12248028 ~ 12250124 (+)
G1708635 NA other downstream 65915 12951685 ~ 12952515 (+)
G1708702 NA other downstream 214071 13099841 ~ 13101833 (+)
G1709276 zdhhc17 other downstream 870416 13756186 ~ 13765456 (+)
LOC110499758 osbpl8 other downstream 1034788 13794979 ~ 13950916 (+)
G1708422 NA non-coding upstream 158146 12726527 ~ 12727498 (+)
G1708413 NA non-coding upstream 168727 12716161 ~ 12716917 (+)

Expression


Co-expression Network