LOC118942885 (LOC106576602)


Basic Information

Item Value
gene id LOC118942885
gene name LOC106576602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12970913 ~ 12974793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956948.1
ATATACTGAGTTGAATAGAGGTATGGTCAATCGTGTGGGCGGTTTTAAGGGAGCTTGATAGATAAAACACAGACAAGTTGCACCTTTCCACTTCATCCAACTCTATTAAGACAAGATGGGTGGCGGCAGCTCTATACCAGAAGGTCCTGACCTGAGAATTGTGATGATTGGGAAAACTGGTGTGGGGAAAAGTGCTGTTGGAAACACAATTTTGGGCAAAAACATATTCAAATCTCATCCCAGCGCTAACTCTGTGACTGGGACTTGTGAAAAGCATCAACTTCGAGAGAGTGAAAGGTGGATTCATGTGGTGGATACACCAGGGATTTTTGATACAGCCAAAAAAGCTGCAGTTATCAAAAACGAGATAGTGAAGTGTATTCAGGTTTCAAGCCCTGGTCCTCATGTCTTCTTGCTGGTGATCCAGGTGGGCAGACTCACCAAAGAGGAGCAGAATTCGATTGAGGCCCTGGAGGAAATCTTTGGACCAGAGGCCTCCAATCACATGATTGTACTGTTTACTCGTGGGGATGAACTTCAGGGTCAAACAATACAAAAGTATGTAAGCACCGGTCATCCAAAGCTTCAAGAAGTGATTCAACGATGTGGCAACAGATTCCATGTTTTCAACAACAGAGATGGGAATAGAAGTCAAGTTGTTGAGCTGATCAAAAAGATTGATGACATGGTGGCAGGAAATGGAGGAAAGCACTTCACTGAGAAAATGTATCAGGAGGCAGAGAGAATGATTAAACAGCAAAATATGACAAGGGAATTGGCAGAACTCCAAATATACGATTTCACATTCCTTGCTGAATTACTGCAGAGAGTcattgaatttaaaaaaatacttgatTTAGAAGATGACTAATAAGTAAGCATAGCTGTGGCTATTTCCTCTCCACGAGGAACACAATCTGTGACTACTGCCACTTATGTGAATTATGATATCTTAAGCATTTAGCTTATTGTCGTATAATATAGTACTTGAGTaggacatctctccttctctaatcaacatttttctttattatttgagATGAACATTAATTAAAATGCTATATATAAAAATTCAGAATGTAGTGAATACAATATGAAGAGAAAGGTGAAAATGAACTGTTGTATGACATGCTGATTGAGCTCTAAGCTTACGGGAGCACTCAAATGAAGTCATGGTGGTATGAAAATCAAGCATAATCTAACTAAAAAAGATATGTATTTCTGTAAAGAGATTGTTTGTTTAATGTTTCACCTAATCAGATACACTGTCATGAACATGCCATATTGGTTAATAATAAGGCGTGCAatgctatactgaacaaaaatatgaacgtaacatgcaacaatttcaacgtttttactcagttacagttcatataaggaaatcagtcaattgaaataaattaattaggccctaatctatggattttacataactgggcaggggcacagcactgcacttacacaaattactgatgattggttgaaggaAATTGAtagtaagaagattgtgggagctgtacggTTAGTTTTCAgagcagcctttgatattattgaccataacctgatGTTAAGAACTTATGTTTTATGGCTAtgcaacctctgccatatcgtcaattcagagctatctatctaatataacTCAGACTCTTTAACGGAAgcctctctaatgtcaaacatgcaggatgtggtgtaccgcagggcatctttctaggccctctactcttttctgtTTTTACCAATAAACTGCCACTGGCATTAACacaaa

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956948.1 True 1768 mRNA 0.38 2 12970913 12974793

Neighbor

gene id symbol gene type direction distance location
cmas cmas coding upstream 85143 12867488 ~ 12885849 (+)
LOC118942883 LOC106596479 coding upstream 110545 12844103 ~ 12860368 (+)
LOC118943029 NA coding upstream 128391 12771599 ~ 12842545 (+)
LOC110516535 LOC106576596 coding upstream 133676 12829169 ~ 12837237 (+)
LOC110490810 LOC106576597 coding upstream 145159 12745000 ~ 12825754 (+)
LOC110490630 LOC106609716 coding downstream 40373 13015166 ~ 13034215 (+)
LOC110490636 LOC106576583 coding downstream 62439 13037232 ~ 13051496 (+)
LOC110490642 LOC106597584 coding downstream 77054 13051847 ~ 13058457 (+)
LOC110518396 LOC106609712 coding downstream 83912 13058705 ~ 13066794 (+)
LOC110490647 LOC106576589 coding downstream 95243 13070036 ~ 13074369 (+)
G1708646 NA non-coding upstream 6144 12964541 ~ 12964769 (+)
G1708643 NA non-coding upstream 10057 12960461 ~ 12960856 (+)
G1708602 NA non-coding upstream 63830 12901283 ~ 12907083 (+)
G1708650 NA non-coding downstream 4338 12979131 ~ 12979348 (+)
G1708651 NA non-coding downstream 6985 12981778 ~ 12982204 (+)
G1708652 NA non-coding downstream 7696 12982489 ~ 12982769 (+)
G1708674 NA non-coding downstream 24657 12999450 ~ 12999709 (+)
G1708683 NA non-coding downstream 100136 13074929 ~ 13079923 (+)
G1708635 NA other upstream 18398 12951685 ~ 12952515 (+)
G1708495 NA other upstream 185411 12784207 ~ 12785502 (+)
G1708367 NA other upstream 319336 12649686 ~ 12651577 (+)
G1708323 NA other upstream 386757 12578608 ~ 12584156 (+)
G1708702 NA other downstream 125048 13099841 ~ 13101833 (+)
G1709276 zdhhc17 other downstream 781393 13756186 ~ 13765456 (+)
LOC110499758 osbpl8 other downstream 945765 13794979 ~ 13950916 (+)
G1709592 NA other downstream 1091056 14065849 ~ 14066683 (+)

Expression


Co-expression Network