LOC110490647 (LOC106576589)


Basic Information

Item Value
gene id LOC110490647
gene name LOC106576589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13070036 ~ 13074369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956971.1
AGATACAATTCTATAAGGAAATCATCAAACGACCTCTTGTAATGGGTCCTCACTGCCTAGAGTACTGTCTGAAACCCGAAATACTCAGCAACCAGGAGCTGTCATGACTGTAGTGATTGGATTTGAGGGTAGTGCCAACAAGATTGGTGTGGGCATTGTGAGGGATGGAGAAGTACTCTCAAACCCCAGACGCACCTACATTACACCCCCTGGTCAAGGGTTCCTGCCTAGTGAGACAGCCAGACATCACCGCAGTGTCATCCTAACAGTTCTGAAGGAGGCGCTGGAGGAGGCAGGGCTGAAGCCTGCTGACGTTGATTGCGTGGCATACACAAAGGGACCAGGGATGGGTGCCCCCTTGGTGACAGTGGCTCTGGTGGCGCGCACAGTGGCCCAGCTGTGGGGGAAGCCTCTCCTGGGTGTCAACCACTGTATTGGCCACATTGAGATGGGCCGCCTCATCACTCAAGCCAATAACCCCACTGTGCTCTATGTCAGTGGGGGTAACACACAGGTGATTGCATACTCTGAGCGGCGCTACAGGATATTTGGTGAGACCATCGACATTGCAGTGGGCAACTGCCTGGACAGGTTTGCCAGGGTGATAAAGATTTCCAATGATCCCAGCCCTGGGTACAACATTGAGCAGATGGCCAAGAAAGGTACACAGTATGTGGAGCTTCCATACACGGTGAAGGGGATGGACGTGTCATTCTCTGGGATTCTATCCTATATCGAGGAAGCAGCTGGGAAGATGTTGAAATGTAATCAGTGTACAGCAGAAGACCTGTGCTTCTCCCTACAGGAGACCCTGTTTTCCATGCTGGTGGAGATCACAGAGAGGGCCATGGCTCACTGCAGCTCCCAGGAAGTGCTCATCGTTGGAGGCGTTGGCTGTAATCTGCGTCTGCAGGAGATGATGGGAGTCATGTGCAAGGAGAGGGGTGCAAAGCTCTTTGCTACAGATGAGAGCTTTTGTATCGATAATGGAGCAATGATTGCACAGGCTGGCTGGGAGATGTTCCGATCCGGTCAGACAACTGAGCTGTCAGACTCATGGATCACTCAAAGGTCTACCATATTGTGCTGTCATCCAGTGACAAGAGAAACATTGTTGTTGGCAGGTACAGAACAGATGAAGTGGAGGTGACCTGGAGAGATTGACAGCTCACTACCCAACAGGCTGCAACTTGCACCCACCCATCTTCCCTTTACCTGGATTGTATGTGTTGTGTCATGATGGAGGGAAACAATGTAGAAATATTCTATGCCTCACTTCTATTGTTCTGAACTCAACACAACAGTTTTTAGCCACACTCATTAGTATTTTAGGCCTAGATTAAATCCGGACTGCAGAAAATCTGCGctattgaaatgtaaaggcaatgttcccgtaTTTGGAGAAAACACCTTTATCTTTTGATCTTTTGGGGCTTTCTCTAGCgctggattcaatctgtatcgcagAAGATCCGCATTAAAGTCATGTCTGATTGAGccaacatatgcagcgtttaccgtgaatgaagTCTCCGCGAACGCGGGAACTATGCCTTTAAATGTCAGTATAATGCAGATCTTCCGCGATACGGATTTAATCCAGCCCCTAGTCCACAATATAGCCACGTTTATACCTGGTGTTAACGTGTCCTGATCCTGTCAACATTCTGATTGCGCCCATATTTTTTGACAAGTGTAAACAATTAAAATTAGTACCTCCGGAGATAGTCAGTGATGCGTTGTAATGTAGCTAGATTTCTTACAACTGTAAACATCTGAATTATCAAACCATTTAAATCATTCcttctaaaatcattgacaggtggcAATATTGGCTTAACATTAAATACAAATTTGCTTTACACTGAAA
>XR_005038533.1
AGATACAATTCTATAAGGAAATCATCAAACGACCTCTTGTAATGGGTCCTCACTGCCTAGAGTACTGTCTGAAACCCGAAATACTCAGCAACCAGGAGCTGTCATGACTGTAGTGATTGGATTTGAGGGTAGTGCCAACAAGATTGGTGTGGGCATTGTGAGGGATGGAGAAGTACTCTCAAACCCCAGACGCACCTACATTACACCCCCTGGTCAAGGGTTCCTGCCTAGTGAGACAGCCAGACATCACCGCAGTGTCATCCTAACAGTTCTGAAGGAGGCGCTGGAGGAGGCAGGGCTGAAGCCTGCTGACGTTGATTGCGTGGCATACACAAAGGGACCAGGGATGGGTGCCCCCTTGGTGACAGTGGCTCTGGTGGCGCGCACAGTGGCCCAGCTGTGGGGGAAGCCTCTCCTGGGTGTCAACCACTGTATTGGCCACATTGAGATGGGCCGCCTCATCACTCAAGCCAATAACCCCACTGTGCTCTATGTCAGTGGGGGTAACACACAGGTGATTGCATACTCTGAGCGGCGCTACAGGATATTTGGTGAGACCATCGACATTGCAGTGGGCAACTGCCTGGACAGGTTTGCCAGGGTGATAAAGATTTCCAATGATCCCAGCCCTGGGTACAACATTGAGCAGATGGCCAAGAAAGGTACACAGTATGTGGAGCTTCCATACACGGTGAAGGGGATGGACGTGTCATTCTCTGGGATTCTATCCTATATCGAGGAAGCAGCTGGGAAGATGTTGAAATGTAATCAGTGTACAGCAGAAGACCTGTGCTTCTCCCTACAGGAGACCCTGTTTTCCATGCTGGTGGAGATCACAGAGAGGGCCATGGCTCACTGCAGCTCCCAGGAAGTGCTCATCGTTGGAGGCGTTGGCTGTAAATCAATTGTAATCTGCGTCTGCAGGAGATGATGGGAGTCATGTGCAAGGAGAGGGGTGCAAAGCTCTTTGCTACAGATGAGAGCTTTTGTATCGATAATGGAGCAATGATTGCACAGGCTGGCTGGGAGATGTTCCGATCCGGTCAGACAACTGAGCTGTCAGACTCATGGATCACTCAAAGGTACAGAACAGATGAAGTGGAGGTGACCTGGAGAGATTGACAGCTCACTACCCAACAGGCTGCAACTTGCACCCACCCATCTTCCCTTTACCTGGATTGTATGTGTTGTGTCATGATGGAGGGAAACAATGTAGAAATATTCTATGCCTCACTTCTATTGTTCTGAACTCAACACAACAGTTTTTAGCCACACTCATTAGTATTTTAGGCCTAGATTAAATCCGGACTGCAGAAAATCTGCGctattgaaatgtaaaggcaatgttcccgtaTTTGGAGAAAACACCTTTATCTTTTGATCTTTTGGGGCTTTCTCTAGCgctggattcaatctgtatcgcagAAGATCCGCATTAAAGTCATGTCTGATTGAGccaacatatgcagcgtttaccgtgaatgaagTCTCCGCGAACGCGGGAACTATGCCTTTAAATGTCAGTATAATGCAGATCTTCCGCGATACGGATTTAATCCAGCCCCTAGTCCACAATATAGCCACGTTTATACCTGGTGTTAACGTGTCCTGATCCTGTCAACATTCTGATTGCGCCCATATTTTTTGACAAGTGTAAACAATTAAAATTAGTACCTCCGGAGATAGTCAGTGATGCGTTGTAATGTAGCTAGATTTCTTACAACTGTAAACATCTGAATTATCAAACCATTTAAATCATTCcttctaaaatcattgacaggtggcAATATTGGCTTAACATTAAATACAAATTTGCTTTACACTGAAA
>XM_036956972.1
GATACAATTCTATAAGGAAATCATCAAACGACCTCTTGTAATGGGTCCTCACTGCCTAGAGTACTGTCTGAAACCCGAAATACTCAGCAACCAGGAGCTGTCATGACTGTAGTGATTGGATTTGAGGGTAGTGCCAACAAGATTGGTGTGGGCATTGTGAGGGATGGAGAAGTACTCTCAAACCCCAGACGCACCTACATTACACCCCCTGGTCAAGGGTTCCTGCCTAGTGAGACAGCCAGACATCACCGCAGTGTCATCCTAACAGTTCTGAAGGAGGCGCTGGAGGAGGCAGGGCTGAAGCCTGCTGACGTTGATTGCGTGGCATACACAAAGGGACCAGGGATGGGTGCCCCCTTGGTGACAGTGGCTCTGGTGGCGCGCACAGTGGCCCAGCTGTGGGGGAAGCCTCTCCTGGGTGTCAACCACTGTATTGGCCACATTGAGATGGGCCGCCTCATCACTCAAGCCAATAACCCCACTGTGCTCTATGTCAGTGGGGGTAACACACAGGTGATTGCATACTCTGAGCGGCGCTACAGGATATTTGGTGAGACCATCGACATTGCAGTGGGCAACTGCCTGGACAGGTTTGCCAGGGTGATAAAGATTTCCAATGATCCCAGCCCTGGGTACAACATTGAGCAGATGGCCAAGAAAGGTACACAGTATGTGGAGCTTCCATACACGGTGAAGGGGATGGACGTGTCATTCTCTGGGATTCTATCCTATATCGAGGAAGCAGCTGGGAAGATGTTGAAATGTAATCAGTGTACAGCAGAAGACCTGTGCTTCTCCCTACAGGAGACCCTGTTTTCCATGCTGGTGGAGATCACAGAGAGGGCCATGGCTCACTGCAGCTCCCAGGAAGTGCTCATCGTTGGAGGCGTTGGCTGTAATCTGCGTCTGCAGGAGATGATGGGAGTCATGTGCAAGGAGAGGGGTGCAAAGCTCTTTGCTACAGATGAGAGCTTTTGTATCGATAATGGAGCAATGATTGCACAGGCTGGCTGGGAGATGTTCCGATCCGGTCAGACAACTGAGCTGTCAGACTCATGGATCACTCAAAGGTACAGAACAGATGAAGTGGAGGTGACCTGGAGAGATTGACAGCTCACTACCCAACAGGCTGCAACTTGCACCCACCCATCTTCCCTTTACCTGGATTGTATGTGTTGTGTCATGATGGAGGGAAACAATGTAGAAATATTCTATGCCTCACTTCTATTGTTCTGAACTCAACACAACAGTTTTTAGCCACACTCATTAGTATTTTAGGCCTAGATTAAATCCGGACTGCAGAAAATCTGCGctattgaaatgtaaaggcaatgttcccgtaTTTGGAGAAAACACCTTTATCTTTTGATCTTTTGGGGCTTTCTCTAGCgctggattcaatctgtatcgcagAAGATCCGCATTAAAGTCATGTCTGATTGAGccaacatatgcagcgtttaccgtgaatgaagTCTCCGCGAACGCGGGAACTATGCCTTTAAATGTCAGTATAATGCAGATCTTCCGCGATACGGATTTAATCCAGCCCCTAGTCCACAATATAGCCACGTTTATACCTGGTGTTAACGTGTCCTGATCCTGTCAACATTCTGATTGCGCCCATATTTTTTGACAAGTGTAAACAATTAAAATTAGTACCTCCGGAGATAGTCAGTGATGCGTTGTAATGTAGCTAGATTTCTTACAACTGTAAACATCTGAATTATCAAACCATTTAAATCATTCcttctaaaatcattgacaggtggcAATATTGGCTTAACATTAAATACAAATTTGCTTTACACTGAAA

Function

NR:

description
PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase isoform X2

GO: NA

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956971.1 False 1870 mRNA 0.47 12 13070036 13074369
XR_005038533.1 False 1828 mRNA 0.47 12 13070036 13074369
XM_036956972.1 True 1816 mRNA 0.47 12 13070037 13074369

Neighbor

gene id symbol gene type direction distance location
LOC110518396 LOC106609712 coding upstream 3242 13058705 ~ 13066794 (+)
LOC110490642 LOC106597584 coding upstream 11579 13051847 ~ 13058457 (+)
LOC110490636 LOC106576583 coding upstream 18540 13037232 ~ 13051496 (+)
LOC110490630 LOC106609716 coding upstream 35821 13015166 ~ 13034215 (+)
LOC118942885 LOC106576602 coding upstream 95243 12970913 ~ 12974793 (+)
LOC110490653 ctrb coding downstream 153429 13227798 ~ 13229394 (+)
LOC118942887 NA coding downstream 156706 13231075 ~ 13231826 (+)
LOC110500963 LOC106609744 coding downstream 624148 13698517 ~ 13725137 (+)
crp crp coding downstream 664689 13739058 ~ 13748205 (+)
LOC110499758 osbpl8 coding downstream 720610 13794979 ~ 13950916 (+)
G1708674 NA non-coding upstream 70327 12999450 ~ 12999709 (+)
G1708652 NA non-coding upstream 87267 12982489 ~ 12982769 (+)
G1708651 NA non-coding upstream 87832 12981778 ~ 12982204 (+)
G1708650 NA non-coding upstream 90688 12979131 ~ 12979348 (+)
G1708646 NA non-coding upstream 105267 12964541 ~ 12964769 (+)
G1708683 NA non-coding downstream 560 13074929 ~ 13079923 (+)
G1708695 LOC106576586 non-coding downstream 9424 13083793 ~ 13085231 (+)
G1708701 NA non-coding downstream 24625 13098994 ~ 13099601 (+)
G1708712 NA non-coding downstream 43362 13117731 ~ 13118685 (+)
G1708730 NA non-coding downstream 72901 13147270 ~ 13147502 (+)
G1708635 NA other upstream 117521 12951685 ~ 12952515 (+)
LOC110490810 LOC106576597 other upstream 256308 12745000 ~ 12825754 (+)
G1708495 NA other upstream 284534 12784207 ~ 12785502 (+)
G1708367 NA other upstream 418459 12649686 ~ 12651577 (+)
G1708702 NA other downstream 25472 13099841 ~ 13101833 (+)
G1709276 zdhhc17 other downstream 681817 13756186 ~ 13765456 (+)
G1709592 NA other downstream 991480 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 1460014 14533785 ~ 14548855 (+)

Expression


Co-expression Network