crp (crp)


Basic Information

Item Value
gene id crp
gene name crp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13739058 ~ 13748205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956480.1
TTAAGCATGTGTTTTTCTATCTAGGCTGTCTGTAGGATCCTCCTTATCTGAAGAGCATactcgaggtgccttattgctcgAGGAACcctcgaggtgccttattgctattataaactggttagcaACGTAATTAttgcagtaaaaatacatgttttttcatacccgtggtatacttCAGAGCTGTAATTTCTGCAGGCTATTACTGGGACACTATGCAACACACCACCTCTAACCCTTATGGTTTCCTGCATGCATTCTAATTAAAACAGATATCTGGCTTAACTCAGACAGGTCTAATCACAGGTATTCTTTCATGCTATATTTCTGACATGTTGGGTTAAAAGCAATGAATGAGTAAAACAGTACAACTCTCCTCCACTGCCTGGCTAAACCACTCCCCTCTCTAAAACAACCGTGAACTGAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCTGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGACCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGGGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCAAAAACAA
>NM_001124725.1
CGTGAACTGAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCTGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGCAAGCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGGGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCAAAAACAA
>XM_036956479.1
GGTCGACGACAAGTCGCTCAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCTGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGCAAGCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGGGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCAAAAACAA

Function

symbol description
crp Enables cholesterol binding activity. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein).

NR:

description
c-reactive protein, pentraxin-related

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956480.1 False 1100 mRNA 0.46 5 13739058 13748205
NM_001124725.1 False 817 mRNA 0.52 6 13739471 13748205
XM_036956479.1 True 750 mRNA 0.52 6 13739657 13748205

Neighbor

gene id symbol gene type direction distance location
LOC110500963 LOC106609744 coding upstream 13921 13698517 ~ 13725137 (+)
LOC118942887 NA coding upstream 507232 13231075 ~ 13231826 (+)
LOC110490653 ctrb coding upstream 509664 13227798 ~ 13229394 (+)
LOC110490647 LOC106576589 coding upstream 664689 13070036 ~ 13074369 (+)
LOC110518396 LOC106609712 coding upstream 672264 13058705 ~ 13066794 (+)
LOC110499758 osbpl8 coding downstream 46774 13794979 ~ 13950916 (+)
LOC110516615 LOC106576514 coding downstream 239027 13987232 ~ 14007450 (+)
LOC118943011 NA coding downstream 249991 13998196 ~ 13998336 (+)
LOC118943020 NA coding downstream 254737 14002942 ~ 14003071 (+)
LOC110499761 LOC106597692 coding downstream 265567 14013772 ~ 14016243 (+)
G1709262 NA non-coding upstream 16729 13722072 ~ 13722329 (+)
G1709252 NA non-coding upstream 22034 13714682 ~ 13717024 (+)
G1709194 NA non-coding upstream 59928 13640350 ~ 13679130 (+)
G1709192 NA non-coding upstream 91580 13635411 ~ 13647478 (+)
G1709268 NA non-coding downstream 130 13748335 ~ 13751291 (+)
G1709273 NA non-coding downstream 3939 13752144 ~ 13752842 (+)
G1709286 NA non-coding downstream 22478 13770683 ~ 13771339 (+)
G1709320 NA non-coding downstream 79727 13827932 ~ 13828788 (+)
G1709322 NA non-coding downstream 88164 13836369 ~ 13836910 (+)
G1708702 NA other upstream 637225 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 685089 13051847 ~ 13058457 (+)
G1708635 NA other upstream 786543 12951685 ~ 12952515 (+)
LOC110490810 LOC106576597 other upstream 925330 12745000 ~ 12825754 (+)
G1708495 NA other upstream 953556 12784207 ~ 12785502 (+)
G1709276 zdhhc17 other downstream 7981 13756186 ~ 13765456 (+)
G1709592 NA other downstream 317644 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 786178 14533785 ~ 14548855 (+)
G1709824 NA other downstream 907482 14655687 ~ 14657284 (+)

Expression


Co-expression Network