LOC110516615 (LOC106576514)


Basic Information

Item Value
gene id LOC110516615
gene name LOC106576514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13987232 ~ 14007450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957009.1
TGTATATGAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGATGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCTGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGCGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTTAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAGGGCAAGAACATCACCTTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCTTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGACGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaa
>XM_036957007.1
TGTATATGAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGATGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCTGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGTAAGTAAGCAGGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGCGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTTAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAGGGCAAGAACATCACCTTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCTTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGACGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaataaaaaaa
>XM_036957011.1
TGTATATGAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGATGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCTGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGTAAGTAAGCAGGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGCGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTTAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAGGGCAAGAACATCACCTTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCTTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGACGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGGTTTAAGTGATGTCTGTAGAAAATAACCCTCTCCTGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaataaaaaaaataaataaagggtTTCAAGATTTTTGTTACAAAAACCTCCTAATATAATGTGAGCAGTGGCTCGATATGCATAGTATTTTACTAGACCCCCACCCCCCTGTACAAATAGTTAGAATGCCACAAACTCCCTGAAAGCATGATCTTGTTTCTCTCACTGCTAAACTAGTTTGGGTTCTTGTGAAGTTTTTTGTTGTATTGCTCTTGGACAACAGCTGTGGTTAGACTGCATTGAGGCAGGTGATGAGAAAGCTAACCTATTCCTTTTCCCTCGCGCTACCAAAGTTACCGGTCAGTTCAGGTTGTGAGTTGGAGTTCTTTTGTCATTGTATTAGTGGGCCTCGAGCACGGTCAGAGCAAAACCCTGCATTTAGTCATGGCTAATGAAAAACTTTGAATCGCTGTGCACATTTGGCCACTCAAGCATGCCATTTAGAGCAGGGAAAGTGGTTATTGGCCACTTGTTTGGGCTGAATCAAGTTGTCATTCTAAAACATTCCAGTTTGCAGACTGACAGGCATTGGACGTTTGAATGCTCTCTTGGGATGAATATTACCTCGACTACGTGGTCTGATTTGTTAAAGAAACAGAACCATGTGTTAGCTGCTAAATTTAATGAGCCGAGTCTGCAACTTAT
>XM_036957010.1
GAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGATGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCTGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGCGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTTAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAGGGCAAGAACATCACCTTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCTTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGACGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaa
>XM_036957008.1
GAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGATGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCTGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGTAAGTAAGCAGGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGCGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTTAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAGGGCAAGAACATCACCTTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCTTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGACGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaataaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957009.1 False 1417 mRNA 0.52 14 13987232 14006808
XM_036957007.1 False 1437 mRNA 0.52 14 13987232 14006816
XM_036957011.1 False 2107 mRNA 0.49 15 13987232 14007450
XM_036957010.1 False 1413 mRNA 0.53 14 13987239 14006808
XM_036957008.1 True 1433 mRNA 0.52 14 13987239 14006816

Neighbor

gene id symbol gene type direction distance location
LOC110499758 osbpl8 coding upstream 36800 13794979 ~ 13950916 (+)
crp crp coding upstream 239027 13739058 ~ 13748205 (+)
LOC110500963 LOC106609744 coding upstream 262095 13698517 ~ 13725137 (+)
LOC118942887 NA coding upstream 755406 13231075 ~ 13231826 (+)
LOC110490653 ctrb coding upstream 757838 13227798 ~ 13229394 (+)
LOC110499761 LOC106597692 coding downstream 6322 14013772 ~ 14016243 (+)
LOC118942888 NA coding downstream 10259 14017709 ~ 14018310 (+)
LOC110500967 LOC106609789 coding downstream 96367 14103817 ~ 14115795 (+)
LOC110499766 LOC106576530 coding downstream 109096 14116546 ~ 14127586 (+)
LOC110499776 LOC106609772 coding downstream 274602 14282052 ~ 14288120 (+)
G1709301 NA non-coding upstream 35047 13951133 ~ 13952185 (+)
G1709363 NA non-coding upstream 40829 13945662 ~ 13946403 (+)
G1709362 NA non-coding upstream 41602 13945302 ~ 13945630 (+)
G1709361 NA non-coding upstream 42919 13943718 ~ 13944313 (+)
G1709360 NA non-coding upstream 51354 13935487 ~ 13935878 (+)
G1709580 NA non-coding downstream 51493 14058943 ~ 14059216 (+)
G1709584 NA non-coding downstream 53344 14060794 ~ 14061124 (+)
G1709594 NA non-coding downstream 59691 14067141 ~ 14067527 (+)
G1709607 NA non-coding downstream 71344 14078794 ~ 14079007 (+)
G1709276 zdhhc17 other upstream 221776 13756186 ~ 13765456 (+)
G1708702 NA other upstream 885399 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 933263 13051847 ~ 13058457 (+)
G1708635 NA other upstream 1034717 12951685 ~ 12952515 (+)
G1709592 NA other downstream 58399 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 526933 14533785 ~ 14548855 (+)
G1709824 NA other downstream 648237 14655687 ~ 14657284 (+)
G1709840 NA other downstream 672032 14679482 ~ 14682208 (+)
G1710321 NA other downstream 1125682 15133132 ~ 15133588 (+)

Expression


Co-expression Network