LOC110500967 (LOC106609789)


Basic Information

Item Value
gene id LOC110500967
gene name LOC106609789
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14103817 ~ 14115795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957014.1
CCTGCACCAAGACAGTGGGCCCTATCAGATTGACCTGCACCTGTTAGTCATTATTAGTCGATGACGTCAGGTCAGTCGTTTGTTTTCGTCAACTCAATCACGCTTACCCATACCTGAGTGCAAAATAACAGCCGCAAGAAAAATGACCTGTTTCGCGTTTCCATTTATATTGTTCATTCTTGTACCTCACACGATATCTCTCGGAAGCTGCAGTAGTTTTACTTTCTCCATATGTTGGAAAATCAGCAACAACTCCTTGTTTGGGAGTTGGCCAGAAGGACATTTATGGTTGAACACCACCAAATTGAAATCCATTTGGAGAGAGGACACATTTTCATCTTTGACAGTTGCCACTACTGTGGAACACAAATTGACACTTCATTATGGTGTCACGGTTCGGAAGTGGATATTCTCCATCTTCCCAGGTTCACATTCCATTGAGTTCAGAAGTATACATAAACCTGACCAACAGCCCATCAATAGCACTCTGGAAGCCCTGGAGTTGTTCTCCACCAATGAGGTGTTTGCGTGTGAAAACAGCACTCTGTACCTCTATCAGGACCCAAACTTCATCCTCATGCTCGGTCACACCGTGCGCTACCCCTTGAAGCTGGAGTCCAGGAGTACCTCCATGTTACTGGTGTCCTGGAAAGAGAAGATGCAGCCCCCGGCTGCCCCTGTCCCCGTCCACTCTGTGTCCCTATACCACTCTGAGATGAAGGCCTACGCTGCCCTTAGTGTGGACAGTACCCACTCCAACCACTACCGCTTCACAGCCCTGGAATCCTGCAGTTCCTATGCTGCCTGTGTGGAGGTGGCAGGCAGCCACTCGCTTACCTGTCTCTCCACTATCACAGACCCAGAAGTCCCCAGACATTTCCAGGTGACGACGTGGAACAGCAGCAGTGTCACAGTGTCCTGGGACTGTCCCGACAACCGCAAGTTCTCCTTCTTCCTTGTCACAGTCCTCTACCTCAATGGCACCAACCATGTCCTGGAGGAGAGGTCCTTCAGGCACACACTGGACACCTTTGTGTTCTCTGAATCTGACCTGCCGCCCTGTAGCAGGGTGAAGTTTGGCCTGCAGACGGTGTGCCAGGCGGGCACGGAGGCTCGCCACAGCAGAATGGTCCTCATCAAAGGGAATACTGTCCACTCAGAAATCGAGAACCTGTGGCAGACCTCCTCGGGGCCGGACAACTACACCCTGAGCTGGGTGGTGAGGAACACTTCTTCTATCTCCATGTTCAGGATCTACCACCAGGGGGTGCTCCACTACACCACCCTGCTCACCAGCCACACGGTGGCCAGCCTGCTGCCCTGCAGCCAGTACTTGACTAGAGTAGAGGCGCTGTGTGGAGACAGCGTGGTCATGAGCTCCAAGACTGTACTCACTCGCACAGGACCCAGAGGTGTTTCAGAACTGCGCTACCGTCCTGAGGACTCTACGGCGCTGTGGATTGGTGGGACCGGACAGGGCGTGGCCTTTCAGTACCAGCTGTCTTATGACAATGGCTCAACCATCCAGCAAGGCCGGCTGATGGAGCCTTTGCTCCCCCTCCTGGGGCTCATTGAGGGTGCGCGCTATGCCCTGGACGTGTGGGAAGAGTGTGACGGCGAGTGGAGCGCCGACCCGGCCCTGGTGTGTTTCGATGGAGTCAACGTTTCCGGCAACGCCCTCGTGCTGCCGGTGGCGTCCACCCTGAGGCCGAATGAAGACAAAGTTCTAGCCTTTATTGTGCCTTGGTTAATGGTGTTGGACCCAAAGACTGAGCCCTGGGCTGAGCTGAAGCGCATCTACGAAAAACTACTGGAGGAGCTTTTGAAAGAGTACCCAATTAAGACCAGGGTGGAGTTGGTTGCATTCAAGGAGCTGGAAGGCGAATCCAAAACTAAGATTACCTTTCAAGGCTTTGACGCTTCCATAACCGACGTAGACTTACCGCTACCACCTGGCGAGCAGCTGGACCATATCCAGTCCCTCCAGCCGCCCAATATCACAGTCAAGGACGGGATCATCTACTGGGATGACCCAGATGAGTGTGCGACGCCTGACCTGAACAGGTGTGATGCCAACTCTTTGTGCGTCAACACTCTGAACTCCTATACCTGTGTGTGTCAACATGGCTTCTATGATGTCGGGCCCGCCTTCGTTCCCCCTCCTACCCCTGCCtcacatcctgtctgttatgAAAAAGGGATGTTCACCCAGTGCCTGACGAGATCGATGGCCGGAGGTATCGCCAAAGCCTTCCTGATTGGCTACTTTGGTGGTGACGTGATGGTTGTCTTGAATGAAGGCCGTTGTACCATGGAGGAGAGCGAGACACTCTACCACTTCCACGTGTTGCGTAAACCCTCGCAGTGTGGAACGATACGGCTGgtgaacAGAACACACATCGAGTTCCGGAATACTCTGACAGTGACCTTGAGCAGAGAGAGGACCATCACACGAAGAGATCTCAAGGTTATCTGGAAGTGCATCTACCCCCGGAACTATGTCCGCAACACCCAGATAAACGTAGATCTGGAGTGgATCACCTCCCACTCTGTGGTGGAGTACAACTCCTCCCATCAGCTGGGGCTGGCCATGACCATGTACAGCGACAACTCCTTCTCCTACGGCTACAGAGACTCCATCGCCCTCCACCTCAGCGACGTACTCTTCTTCGAGGTGGCCCTCCTGACAAACAACACGTTCGCCTCGGAGGTCCTGCTAGAAGTGATTTCCTGCTGGGCCACAGAGAGCCCGGATCCACAAGACGAAACCAAGGGCTTCTTTCTCCTAGATGGCTGCCCTGTTGACAGCACCTTTCATTGGCTCTCTGTGAACGGTGTGTCACAGAGGAGCAGATTCTCCATTCACATGTTCACTATGCCCAAGGAGTTACCCATCTACATGCACTGCCTGGCCCGGATATGCAGTCACGATGAGGACTGTACTACGAACTGTACCACCCACAGACTTTCAAAGAGATCAACAGCTAGATGGGATCCATACATCAATGTAGCTGTGGTCGTGTCTGCAGGACCACTGATGGTCACCCCCGAGGCGGCACCAGGGACCAAACTCTCCAACTGGGATGAGGCTTTGACAATGATCTACGTCGTGGGAGGAACCATGGGTGTCTTGATGTTGACGATGCTTGGTGTGAGCGCAACAAAGGCTATAATGAATTATTATGAGAGAGCAAGGCCTCAATAAAAACATGGAACCACA
>XM_036957013.1
CTGCACCAAGACAGTGGGCCCTATCAGATTGACCTGCACCTGTTAGTCATTATTAGTCGATGACGTCAGGTCAGTCGTTTGTTTTCGTCAACTCAATCACGCTTACCCATACCTGAGTGCAAAATAACAGCCGCAAGAAAAATGTAGGCTAAACATATACTTAATTTCGTTCTTGTATTATTAATTTAATGGTGAATTAAGGTGGCCATGATTATTGATAAAGAACACCGACTTTGCTTTTGCAGGACCTGTTTCGCGTTTCCATTTATATTGTTCATTCTTGTACCTCACACGATATCTCTCGGAAGCTGCAGTAGTTTTACTTTCTCCATATGTTGGAAAATCAGCAACAACTCCTTGTTTGGGAGTTGGCCAGAAGGACATTTATGGTTGAACACCACCAAATTGAAATCCATTTGGAGAGAGGACACATTTTCATCTTTGACAGTTGCCACTACTGTGGAACACAAATTGACACTTCATTATGGTGTCACGGTTCGGAAGTGGATATTCTCCATCTTCCCAGGTTCACATTCCATTGAGTTCAGAAGTATACATAAACCTGACCAACAGCCCATCAATAGCACTCTGGAAGCCCTGGAGTTGTTCTCCACCAATGAGGTGTTTGCGTGTGAAAACAGCACTCTGTACCTCTATCAGGACCCAAACTTCATCCTCATGCTCGGTCACACCGTGCGCTACCCCTTGAAGCTGGAGTCCAGGAGTACCTCCATGTTACTGGTGTCCTGGAAAGAGAAGATGCAGCCCCCGGCTGCCCCTGTCCCCGTCCACTCTGTGTCCCTATACCACTCTGAGATGAAGGCCTACGCTGCCCTTAGTGTGGACAGTACCCACTCCAACCACTACCGCTTCACAGCCCTGGAATCCTGCAGTTCCTATGCTGCCTGTGTGGAGGTGGCAGGCAGCCACTCGCTTACCTGTCTCTCCACTATCACAGACCCAGAAGTCCCCAGACATTTCCAGGTGACGACGTGGAACAGCAGCAGTGTCACAGTGTCCTGGGACTGTCCCGACAACCGCAAGTTCTCCTTCTTCCTTGTCACAGTCCTCTACCTCAATGGCACCAACCATGTCCTGGAGGAGAGGTCCTTCAGGCACACACTGGACACCTTTGTGTTCTCTGAATCTGACCTGCCGCCCTGTAGCAGGGTGAAGTTTGGCCTGCAGACGGTGTGCCAGGCGGGCACGGAGGCTCGCCACAGCAGAATGGTCCTCATCAAAGGGAATACTGTCCACTCAGAAATCGAGAACCTGTGGCAGACCTCCTCGGGGCCGGACAACTACACCCTGAGCTGGGTGGTGAGGAACACTTCTTCTATCTCCATGTTCAGGATCTACCACCAGGGGGTGCTCCACTACACCACCCTGCTCACCAGCCACACGGTGGCCAGCCTGCTGCCCTGCAGCCAGTACTTGACTAGAGTAGAGGCGCTGTGTGGAGACAGCGTGGTCATGAGCTCCAAGACTGTACTCACTCGCACAGGACCCAGAGGTGTTTCAGAACTGCGCTACCGTCCTGAGGACTCTACGGCGCTGTGGATTGGTGGGACCGGACAGGGCGTGGCCTTTCAGTACCAGCTGTCTTATGACAATGGCTCAACCATCCAGCAAGGCCGGCTGATGGAGCCTTTGCTCCCCCTCCTGGGGCTCATTGAGGGTGCGCGCTATGCCCTGGACGTGTGGGAAGAGTGTGACGGCGAGTGGAGCGCCGACCCGGCCCTGGTGTGTTTCGATGGAGTCAACGTTTCCGGCAACGCCCTCGTGCTGCCGGTGGCGTCCACCCTGAGGCCGAATGAAGACAAAGTTCTAGCCTTTATTGTGCCTTGGTTAATGGTGTTGGACCCAAAGACTGAGCCCTGGGCTGAGCTGAAGCGCATCTACGAAAAACTACTGGAGGAGCTTTTGAAAGAGTACCCAATTAAGACCAGGGTGGAGTTGGTTGCATTCAAGGAGCTGGAAGGCGAATCCAAAACTAAGATTACCTTTCAAGGCTTTGACGCTTCCATAACCGACGTAGACTTACCGCTACCACCTGGCGAGCAGCTGGACCATATCCAGTCCCTCCAGCCGCCCAATATCACAGTCAAGGACGGGATCATCTACTGGGATGACCCAGATGAGTGTGCGACGCCTGACCTGAACAGGTGTGATGCCAACTCTTTGTGCGTCAACACTCTGAACTCCTATACCTGTGTGTGTCAACATGGCTTCTATGATGTCGGGCCCGCCTTCGTTCCCCCTCCTACCCCTGCCtcacatcctgtctgttatgAAAAAGGGATGTTCACCCAGTGCCTGACGAGATCGATGGCCGGAGGTATCGCCAAAGCCTTCCTGATTGGCTACTTTGGTGGTGACGTGATGGTTGTCTTGAATGAAGGCCGTTGTACCATGGAGGAGAGCGAGACACTCTACCACTTCCACGTGTTGCGTAAACCCTCGCAGTGTGGAACGATACGGCTGgtgaacAGAACACACATCGAGTTCCGGAATACTCTGACAGTGACCTTGAGCAGAGAGAGGACCATCACACGAAGAGATCTCAAGGTTATCTGGAAGTGCATCTACCCCCGGAACTATGTCCGCAACACCCAGATAAACGTAGATCTGGAGTGgATCACCTCCCACTCTGTGGTGGAGTACAACTCCTCCCATCAGCTGGGGCTGGCCATGACCATGTACAGCGACAACTCCTTCTCCTACGGCTACAGAGACTCCATCGCCCTCCACCTCAGCGACGTACTCTTCTTCGAGGTGGCCCTCCTGACAAACAACACGTTCGCCTCGGAGGTCCTGCTAGAAGTGATTTCCTGCTGGGCCACAGAGAGCCCGGATCCACAAGACGAAACCAAGGGCTTCTTTCTCCTAGATGGCTGCCCTGTTGACAGCACCTTTCATTGGCTCTCTGTGAACGGTGTGTCACAGAGGAGCAGATTCTCCATTCACATGTTCACTATGCCCAAGGAGTTACCCATCTACATGCACTGCCTGGCCCGGATATGCAGTCACGATGAGGACTGTACTACGAACTGTACCACCCACAGACTTTCAAAGAGATCAACAGCTAGATGGGATCCATACATCAATGTAGCTGTGGTCGTGTCTGCAGGACCACTGATGGTCACCCCCGAGGCGGCACCAGGGACCAAACTCTCCAACTGGGATGAGGCTTTGACAATGATCTACGTCGTGGGAGGAACCATGGGTGTCTTGATGTTGACGATGCTTGGTGTGAGCGCAACAAAGGCTATAATGAATTATTATGAGAGAGCAAGGCCTCAATAAAAACATGGAACCACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609789

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957014.1 False 3220 mRNA 0.53 19 14103817 14115795
XM_036957013.1 True 3321 mRNA 0.52 18 14103818 14115795

Neighbor

gene id symbol gene type direction distance location
LOC118942888 NA coding upstream 85507 14017709 ~ 14018310 (+)
LOC110499761 LOC106597692 coding upstream 87574 14013772 ~ 14016243 (+)
LOC110516615 LOC106576514 coding upstream 96367 13987232 ~ 14007450 (+)
LOC118943020 NA coding upstream 100746 14002942 ~ 14003071 (+)
LOC118943011 NA coding upstream 105481 13998196 ~ 13998336 (+)
LOC110499766 LOC106576530 coding downstream 751 14116546 ~ 14127586 (+)
LOC110499776 LOC106609772 coding downstream 166257 14282052 ~ 14288120 (+)
LOC110499784 kcnc2 coding downstream 180172 14295967 ~ 14378043 (+)
LOC110499786 pmpcb coding downstream 362460 14478255 ~ 14482429 (+)
LOC110499788 psmc2 coding downstream 372623 14488418 ~ 14493003 (+)
G1709607 NA non-coding upstream 24810 14078794 ~ 14079007 (+)
G1709594 NA non-coding upstream 36290 14067141 ~ 14067527 (+)
G1709584 NA non-coding upstream 42693 14060794 ~ 14061124 (+)
G1709580 NA non-coding upstream 44601 14058943 ~ 14059216 (+)
G1709301 NA non-coding upstream 151632 13951133 ~ 13952185 (+)
G1709634 glipr1 non-coding downstream 12226 14128021 ~ 14219097 (+)
G1709644 NA non-coding downstream 19735 14135530 ~ 14212814 (+)
G1709648 NA non-coding downstream 25677 14141472 ~ 14251606 (+)
G1709632 LOC106609788 non-coding downstream 33187 14148982 ~ 14257172 (+)
G1709592 NA other upstream 37134 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 152901 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 338361 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1001984 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1049848 13051847 ~ 13058457 (+)
LOC118942889 LOC106609776 other downstream 418588 14533785 ~ 14548855 (+)
G1709824 NA other downstream 539892 14655687 ~ 14657284 (+)
G1709840 NA other downstream 563687 14679482 ~ 14682208 (+)
G1710321 NA other downstream 1017337 15133132 ~ 15133588 (+)
LOC110499821 LOC106609608 other downstream 1363353 15462544 ~ 15700037 (+)

Expression


Co-expression Network