LOC110499766 (LOC106576530)


Basic Information

Item Value
gene id LOC110499766
gene name LOC106576530
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14116546 ~ 14127586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957016.1
CGTAATGCAACGCAGCAATTTTTGAACGCAACCCTCATCTTAGTTCCAAACGCAGTTCCGGTCTGTATTTCCGGCATAACAAAAATGGCGTCCTCCACTAACGAAGGAAGCGTGAATGAAACGCGGTCGGGGAAGAAGTCGAAAAAGAATACAAACCAAGTGGATGAATCTCAACTCTTCGCTGTTCCCGATGGATGGAAGGAGCCAGCATTCACAAAAGATGACAACCCCAAAGGTCTACTGGAGGAGAGCAGTTTCGCCACTCTCTTTCCGAAGTATAGAGAGGCATACCTGAAAGAATGCTGGCCACTGGTGCAAAAAGCATTAGGCGATTCACACATCAAGGCCACCCTGGATTTGATCGAGGGCAGCATCACGGTTTGCACCACCAAAAAGACCTTTGACCCATATGCCGTTGTGAGGGCACGGGACCTCATCAAGCTGTTGGCCAGAAGTGTGCCTTTTGAGCAGGCCGTGCGTATTTTGGAGGATGACATGGCGTGTGACATCATCAAAATTGGCACGCTGGTCAGAACCAGAGAACGGTTtgtgaagaggaggcagagactCATCGGACCTAAAGGATCTACACTCAAGGCATTGGAGCTGCTCACCAATTGCTACGTCATGGTGCAGGGGAACACTGTGTCAGCCCTGGGACCCTTCAACGGCCTCAAAGAGGTACGGAAGGTGGTGTTGGATACCATGAAGAACATCCACCCCATCTACAACATCAAGACGCTCATGATCAAGCGCGAGCTGTCCAAGGACCCCGAGCTGCGGCTGCAGAGCTGGGAACGATTCCTACCCAACTTCCGACACAAGAACCTGACCAAGCGCAAGGAGCCTAAGAAAAAGACGACAAAGAAGGAGTACACGCCTTTCCCCCCGCAGCAGCCTGAGAGCCAGATTGACAAGGAACTGGCAACGGGAGAGTTCTTTCTTCGAGAGAGTGttaagaagaggaagaagatggAAGAGATAAAGGTGAAACAAGCCGAGGTGTTGTCTAAGAGGCAAGAGGAGCGAAACAGGGCCTTTATTCCTCCTAAGGAGAAACCTGTTATGAAGAAGACCAACAAAGCTCCCTCAGAAGCCAAAATCAACATTGAGGCCATCAAGGCTAAGGTAAGGAAAGCCAAGACCAAGAAGCTAGGAGCCCCCTCTGTTAACCCTGTCCCACAGACCAAACCCGCCTATGACAAGAAGAAAAAGAACAAGGGCTAACCTTGGAAAAGCTTGGACAATGGACAATATTCACTATTGCTGCATTCAAATGAGGTATGCAGATCACTGGCGTGAAGGACGCCAGGTTTGTCAGGACATGGGTTTGTCTAAAGATGTATTTGGGATATTAATAGAATATCCCCAATTCCTCACAGAGATGAATCTTCCTCATAGTTTTGATGAAATGAATATGGAATGCCTCTGTCCTCAGAGGAGACAGTATACAGTAAAGGTGTCTCCCTATATGTGACACCCAATGCCTCAGTGTTACCTAGTTAGCCTGTGACCGAGGCCCGTTCTTCAATATTGTTTAGCAACTGTTTGTAAGACGTGCACAGAATGTGGTTCACCACATCCCGACGCCACAGATTCCTCCTCTTGTCCTAATCCTCAGAACAACTTGTACTGCTTTCCACCAACACctgtccatgttaatatttacaGTAAGCACTCTACTTTATGAAGACTGCAAGTATAATGCATTGGAAGGCTAGTAATGTTTCATAATGATGCTGACTTAGTCTGTTAATAtactcattaaaaaaaacatgcataCTATTAAAAGCTTTTAAAGCTTTTTTTTATAGTCCTTATTATACATGATTAACAAGGGATTAAGCTATATACCTGCAGGCTTTGAAAAAAGGCACTGAAAGTTTTAGTTCATGATTAAATGAACATTGTTGTCGAGTGTTGCAGAAATGGGCCTAGAGGACTGCTGAACAGTGACATAGCATTGTGATGTTTAGGAGAACTGTGTGTTGGGCTGCATTCTTTGTAATTTGGTGTTGCTACTTCTAAAGACTCAATAAAACAAGTATATGATAATCTCT
>TU1958402
TTAGTTTTAGAAGTTCAAGAGTGGCCTGGAAATTATTACTCCAAGCCTGGAAATTATTACTCCAGACCACTCTTGAACGTCTTATGAATATATTTTAAACTGCCCCTTTTCCGGCCCGCAAATTGCTTAGAGTTCCCAATCTTCTTTTTTAATCATCCTTGTACTATAACATACAACAGCCATAGAGCCTAACATCAACAGATGACTTGGTCTATAACTACTTGATATAACCCATCCATCACTAAACCTATCACTAAGCTTGTTCATACCCATGTTCCTGGATTCACTGTTTTGTTGTGTTTCCTGGTTGTCTAGATTGACAAGGAACTGGCAACGGGAGAGTTCTTTCTTCGAGAGAGTGttaagaagaggaagaagatggAAGAGATAAAGGTGAAACAAGCCGAGGTGTTGTCTAAGAGGCAAGAGGAGCGAAACAGGGCCTTTATTCCTCCTAAGGAGAAACCTGTTATGAAGAAGACCAACAAAGCTCCCTCAGAAGCCAAAATCAACATTGAGGCCATCAAGGCTAAGGTAAGGAAAGCCAAGACCAAGAAGCTAGGAGCCCCCTCTGTTAACCCTGTCCCACAGACCAAACCCGCCTATGACAAGAAGAAAAAGAACAAGGGCTAACCTTGGAAAAGCTTGGACAATGGACAATATTCACTATTGCTGCATTCAAATGAGGTATGCAGATCACTGGCGTGAAGGACGCCAGGTTTGTCAGGACATGGGTTTGTCTAAAGATGTATTTGGGATATTAATAGAATATCCCCAATTCCTCACAGAGATGAATCTTCCTCATAGTTTTGATGAAATGAATATGGAATGCCTCTGTCCTCAGAGGAGACAGTATACAGTAAAGGTGTCTCCCTATATGTGACACCCAATGCCTCAGTGTTACCTAGTTAGCCTGTGACCGAGGCCCGTTCTTCAATATTGTTTAGCAACTGTTTGTAAGACGTGCACAGAATGTGGTTCACCACATCCCGACGCCACAGATTCCTCCTCTTGTCCTAATCCTCAGAACAACTTGTACTGCTTTCCACCAACACctgtccatgttaatatttacaGTAAGCACTATTGGAAGGCTAGTAATGTTTCATAATGATGCTGACTTAGTCTGTTAATAtactcattaaaaaaaacatgcataCTATTAAAAGCTTTTAAAGCTTTTTTTTATAGTCCTTATTATACATGAT

Function

NR:

description
KRR1 small subunit processome component homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957016.1 False 2060 mRNA 0.46 10 14116546 14127586
TU1958402 True 1208 lncRNA 0.41 4 14125213 14127357

Neighbor

gene id symbol gene type direction distance location
LOC110500967 LOC106609789 coding upstream 751 14103817 ~ 14115795 (+)
LOC118942888 NA coding upstream 98236 14017709 ~ 14018310 (+)
LOC110499761 LOC106597692 coding upstream 100303 14013772 ~ 14016243 (+)
LOC110516615 LOC106576514 coding upstream 109096 13987232 ~ 14007450 (+)
LOC110499776 LOC106609772 coding downstream 154466 14282052 ~ 14288120 (+)
LOC110499784 kcnc2 coding downstream 168381 14295967 ~ 14378043 (+)
LOC110499786 pmpcb coding downstream 350669 14478255 ~ 14482429 (+)
LOC110499788 psmc2 coding downstream 360832 14488418 ~ 14493003 (+)
LOC110499790 tspan33 coding downstream 386833 14514419 ~ 14533522 (+)
G1709607 NA non-coding upstream 37539 14078794 ~ 14079007 (+)
G1709594 NA non-coding upstream 49019 14067141 ~ 14067527 (+)
G1709584 NA non-coding upstream 55422 14060794 ~ 14061124 (+)
G1709580 NA non-coding upstream 57330 14058943 ~ 14059216 (+)
G1709301 NA non-coding upstream 164361 13951133 ~ 13952185 (+)
G1709634 glipr1 non-coding downstream 435 14128021 ~ 14219097 (+)
G1709644 NA non-coding downstream 7944 14135530 ~ 14212814 (+)
G1709648 NA non-coding downstream 13886 14141472 ~ 14251606 (+)
G1709632 LOC106609788 non-coding downstream 21396 14148982 ~ 14257172 (+)
G1709657 NA non-coding downstream 32397 14159983 ~ 14191085 (+)
G1709592 NA other upstream 49863 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 165630 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 351090 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1014713 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1062577 13051847 ~ 13058457 (+)
LOC118942889 LOC106609776 other downstream 406797 14533785 ~ 14548855 (+)
G1709824 NA other downstream 528101 14655687 ~ 14657284 (+)
G1709840 NA other downstream 551896 14679482 ~ 14682208 (+)
G1710321 NA other downstream 1005546 15133132 ~ 15133588 (+)
LOC110499821 LOC106609608 other downstream 1351562 15462544 ~ 15700037 (+)

Expression


Co-expression Network