LOC110499784 (kcnc2)


Basic Information

Item Value
gene id LOC110499784
gene name kcnc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14295967 ~ 14378043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957031.1
TGAAATGTAGGACCACACTCTGTGATGGAAATAGAACGGGATCCACATGAGACATGTTTCTCAGTCAAGCAATCTGACCTGTTGAGAACACTCACGTTCAACATCTTATTTCGGCGAATcataaaagctgaaaaaagtTGCACTAGATATTCGTTGGCATAGATTTGAACTATTTTGATTGCCAATCCAAATGTAATGAGCGATCGTTGCTACATAGCAACATGAGCACGTGTGAGAGGATCGCTAGtaacacggacgcacacacacacactatagcaaCAGACAACCTGTGTGCAGAAAGGGAGAGGGTGTGCCCTTGACGTCGTTTCTCGTCAAAGACTCACATTTCGGAGAGAACCATATCCAGGTTTGCTTACTTGCTATTCACCACGGCATTGTCATGACTTTAACGAAAAGGGCACAGAGCTCAAGGTTACAAATCAATAATTGGAATGGTTTCGTTTGACTTCACCTGTCCAAGTGTGGAGCGGAGAAGAGAGTCAAGACACCCCCAAGGCACACATCACTAGCGCTGCCTGTGCTTGGAGCTACTGGCTGACAGATCCTTCGCACAAGGAGGAACTAGAGGGAGTCTGACAAGCGATAAGATCCTCTCTTCCaaatcaccaacaacgacgagattgGTAAAGCACCTTCACCAAGCGTAATGAGAGCTCCAGGCTGGATCTGGAGTGGCTGCTCTCAGCTGAAACCAAAAGGGTTTTCGTGAGATTTTCTAACCCAACTGGGTGTGTACAGCACCGTGCCCGCTGTTACTCTGGACTGCACTCGATATACCTTATTTACCAAGTCATGTCTTATACAGAGCGATGGGTAAGTTCGACGACAACGAGAGGATAATCCTCAACGTTGGGGGAACCAGGCACGAGACGTACAAGAACACGCTCAGGACACTGCCGGGGACTCGGCTGGCCCTTCTTGCCTCCGATTCTGACATCGAGTCCGTTTTGGATCAGCTGCAACAAGTCCCCGGCTTCATAGAGTACAACACGCGGAACAACGAATACTTTTTTGACCGCCACCCAGGGGTATTCGCTTATGTCCTTAACTACTATCGAACCGGGAAACTCCATTGCCCAGCAGATGTTTGTGGTCCGCTGTTCGAGGAAGAGCTGTCCTTCTGGGGAATCGATGAGACGGACGTGGAGCCTTGCTGCTGGATGACCTATCGCCAACACAGGGACGCCGAGGAGGCGCTCGATGTGTTCGACATAAACGTTGACAATGGAGACGACGACGAAGAGACGGGGAAAAGACTCGGCATTGAGGACGTGGTTGATCCTAATATCAGCCGCTGGAAAAAGTGGCGACCTGTGATTTGGAATCTATTTGAGGATCCCTATTCTTCCAGAGCAGCCAGGtTTGTGGCCTTTGCCTCCTTGTTCTTCATCCTGGTCTCGATTACCACCTTCTGcctggagacccatgaggcattcaacaccatcaccatcatcaacaaGTCTGAGGCGGTGCTCAACGGCAGCCTGCCGGACCTGGGTCCTGATTACATTATCGAGACGGACCCAGCTCTCACCTACGTAGAGGGTGTCTGCGTTCTTTGGTTCACCCTGGAGTTCATGGTGCGTGTCATCTTCAGCCCAGACAAGCTGGAGTTTGTCAAGAGCCTGCTCAACATAATCGACTTTGTGGCTATCCTGCCTTTCTACCTGGAGGTAGGCTTAAGCGGACTGTCATCTAAAGCAGCTAAGGACGTCTTGGGCTTCCTCAGAGTGGTAAGGTTTGTCAGGATCCTGCGTATCTTCAAGCTGACGCGACACTTCGTGGGGCTGCGGGTGCTGGGTCACACCTTGAAGGCTAGCACCAACgagttcctcctcctcatcatcttcCTCGCCCTAGGTGTGCTTATCTTCGCCACCGCAATCTACTACGCCGAGCGCATCGGCGCCAACCCCAACGACCCCACGGCTGGCGAACACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGTTATGGTGACATGTACCCGCAGACGTGGTCGGGCATGCTGGTGGGCGCGTTGTGCGCCCTGGCGGGCGTGCTGACGATAGCCATGCCTGTGCCCGTCATCGTCAACAACTTTGGAATGTACTACTCGCTGGCCATGGCCAAGCAGAAGCTTCCCAAGAAGAGGAAGAGGCACATCCCCCAGGTCGCACTGGGGGGATCCCCAACCTGCCTCAAAGTAGACCTCAACACCACCTGCAACAGCCCCCAGGGGGACCTCTGCAACATGCAGGGGAGCAGGGTGCTGGAGCGCAACCAATCAGTGCTGTCAGGGGACGGCAGTGGAGGCAGTGATCTCACCATGTCCCCCAGCACAGAGGAGAGGGTCCCCATGCGCAGGTCCAGCACCCCAGAGCAGGAGCGGAGGAGTGGGGGGACGTGCTTCCTGCTGGCTGCCAGTGACTACACCTGCCCTGCCGACGGTGGGGTCAGGAAGACAGGCTGTGAGAAATCCCCAAGCTTAAGCAACGCCCTGAGGCTGTCTCCAGTGACCTCACCCTACGGTTCACCGTGCCCCCTGAGGCGTTCCCGCTCCCCAATACCATCCGTCCTgtgaggcccggcccagagcgaGGCTTGCCTTCCGTCTGAGCACactcccctcccccacccccaaaACACCCGACAGAAGCCAGCTTCATAGGCGTTAGCTCTCTGTAGCGTCCTGGAATCATATAATATACTTTGTGAATGTTGTTAGCTACTTTAGAGACTAACCTTAGTGGTTTCGACCACAGACTAACCctgctcttctcctcttccaTGCAAACGTTGCTTTGAACTGTAGATGTGGTGACCACCCCTGAAGTAGCTTAGCTGTGCATCACTTTGTATTCCCATTACTTCAGTTTTGTTGTACTTTAATAATGGCAATAAAAGGACTCTTGAATGGTGGCTCTAAAAGTAGCAGCCACAACATTTAGTAAATACGTATTCATAATCAGGGAGATTTACATGTTGCTATATTTAGATACTTAGAACATACGTGCTTccataaaaaataagaaaaatgtcACTttattttgtggggggggggactTGTCATGGACTATGTCTTGATTCACACGCTCTCACCTGCCACCCTCTAGCTCTCACCTGTCACTCTCTAGCTCTCACCTGCCACCCTCTAGCTCTCACCTGTCACCCTCTCGCTCTCACCTGCCACCCTCTAGCTCTCACCTGTCACCCTCTCGCTCTCACctgtcactctctcgctctcacctgccaccctctcgctctcacctgccaccctgtcactctcacctgtcactctctcgctctcacctgCCACCCTCTAGCTCTCACCTGCCACGCTGTCGCTCTCACCTGTCACCCTCTCGCTCTCACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCCCTCTGACCTGCCACCCTGTCACTCTCAGCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCCCTCTGACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCACTCTGACCTGCCACCCTGTCACTTTCCCCTGTCACTCTGACCTGCCACCCTGTCCCTCTGACCTGCCACCCTGTTTCTCTCACCTTCCACCCTGTCACTCTCACCTGTCACTCTGACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCCCTCTGACCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCACTTTCCCCTGCCACCCTGTCACTCTCACCTGCCACCCTGTCACTCTCACCTGCTACCCTGTCCCTCTCAACTGccaccctgtccatctcccctg
>XM_036957033.1
AATGTAGGACCACACTCTGTGATGGAAATAGAACGGGATCCACATGAGACATGTTTCTCAGTCAAGCAATCTGACCTGTTGAGAACACTCACGTTCAACATCTTATTTCGGCGAATcataaaagctgaaaaaagtTGCACTAGATATTCGTTGGCATAGATTTGAACTATTTTGATTGCCAATCCAAATGTAATGAGCGATCGTTGCTACATAGCAACATGAGCACGTGTGAGAGGATCGCTAGtaacacggacgcacacacacacactatagcaaCAGACAACCTGTGTGCAGAAAGGGAGAGGGTGTGCCCTTGACGTCGTTTCTCGTCAAAGACTCACATTTCGGAGAGAACCATATCCAGGTTTGCTTACTTGCTATTCACCACGGCATTGTCATGACTTTAACGAAAAGGGCACAGAGCTCAAGGTTACAAATCAATAATTGGAATGGTTTCGTTTGACTTCACCTGTCCAAGTGTGGAGCGGAGAAGAGAGTCAAGACACCCCCAAGGCACACATCACTAGCGCTGCCTGTGCTTGGAGCTACTGGCTGACAGATCCTTCGCACAAGGAGGAACTAGAGGGAGTCTGACAAGCGATAAGATCCTCTCTTCCaaatcaccaacaacgacgagattgGTAAAGCACCTTCACCAAGCGTAATGAGAGCTCCAGGCTGGATCTGGAGTGGCTGCTCTCAGCTGAAACCAAAAGGGTTTTCGTGAGATTTTCTAACCCAACTGGGTGTGTACAGCACCGTGCCCGCTGTTACTCTGGACTGCACTCGATATACCTTATTTACCAAGTCATGTCTTATACAGAGCGATGGGTAAGTTCGACGACAACGAGAGGATAATCCTCAACGTTGGGGGAACCAGGCACGAGACGTACAAGAACACGCTCAGGACACTGCCGGGGACTCGGCTGGCCCTTCTTGCCTCCGATTCTGACATCGAGTCCGTTTTGGATCAGCTGCAACAAGTCCCCGGCTTCATAGAGTACAACACGCGGAACAACGAATACTTTTTTGACCGCCACCCAGGGGTATTCGCTTATGTCCTTAACTACTATCGAACCGGGAAACTCCATTGCCCAGCAGATGTTTGTGGTCCGCTGTTCGAGGAAGAGCTGTCCTTCTGGGGAATCGATGAGACGGACGTGGAGCCTTGCTGCTGGATGACCTATCGCCAACACAGGGACGCCGAGGAGGCGCTCGATGTGTTCGACATAAACGTTGACAATGGAGACGACGACGAAGAGACGGGGAAAAGACTCGGCATTGAGGACGTGGTTGATCCTAATATCAGCCGCTGGAAAAAGTGGCGACCTGTGATTTGGAATCTATTTGAGGATCCCTATTCTTCCAGAGCAGCCAGGtTTGTGGCCTTTGCCTCCTTGTTCTTCATCCTGGTCTCGATTACCACCTTCTGcctggagacccatgaggcattcaacaccatcaccatcatcaacaaGTCTGAGGCGGTGCTCAACGGCAGCCTGCCGGACCTGGGTCCTGATTACATTATCGAGACGGACCCAGCTCTCACCTACGTAGAGGGTGTCTGCGTTCTTTGGTTCACCCTGGAGTTCATGGTGCGTGTCATCTTCAGCCCAGACAAGCTGGAGTTTGTCAAGAGCCTGCTCAACATAATCGACTTTGTGGCTATCCTGCCTTTCTACCTGGAGGTAGGCTTAAGCGGACTGTCATCTAAAGCAGCTAAGGACGTCTTGGGCTTCCTCAGAGTGGTAAGGTTTGTCAGGATCCTGCGTATCTTCAAGCTGACGCGACACTTCGTGGGGCTGCGGGTGCTGGGTCACACCTTGAAGGCTAGCACCAACgagttcctcctcctcatcatcttcCTCGCCCTAGGTGTGCTTATCTTCGCCACCGCAATCTACTACGCCGAGCGCATCGGCGCCAACCCCAACGACCCCACGGCTGGCGAACACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGTTATGGTGACATGTACCCGCAGACGTGGTCGGGCATGCTGGTGGGCGCGTTGTGCGCCCTGGCGGGCGTGCTGACGATAGCCATGCCTGTGCCCGTCATCGTCAACAACTTTGGAATGTACTACTCGCTGGCCATGGCCAAGCAGAAGCTTCCCAAGAAGAGGAAGAGGCACATCCCCCAGGTCGCACTGGGGGGATCCCCAACCTGCCTCAAAGTAGACCTCAACACCACCTGCAACAGCCCCCAGGGGGACCTCTGCAACATGCAGGGGAGCAGGGTGCTGGAGCGCAACCAATCAGTGCTGTCAGGGGACGGCAGTGGAGGCAGTGATCTCACCATGTCCCCCAGCACAGAGGAGAGGGTCCCCATGCGCAGGTCCAGCACCCCAGAGCAGGAGCGGAGGAGTGGGGGGACGTGCTTCCTGCTGGCTGCCAGTGACTACACCTGCCCTGCCGACGGTGGGGTCAGGAAGACAGATAACTGCAAAGAGATTGTCTTTACTGGTTTCACGCAAGCAGAGAGCAGCATTCTTTAATTGCTGGGGGAAGGCACATCCCTGGTGGAAAGCTGTTTACGTGTCCTATTGGAATGACAGCAGTCCTCAGCCAATCAGTGGACTAACAAGACCTATTGGTGTGTGGATCCTGTTGGATCACACAGCGTCACTCAAGGACGTGAACCAACCAGAACACTCACATCGGTGAAGGATTGTTGACTGACAAGCGTCAGGTCCAATGACGCTGCCTGGGAAAACAGGAACTGTCCAAGACTGAGGTCAATTGGAATTCTGGGAATAGATGGGACAGGGGAAGTTGTCTTTTTCCCAGATTCTCAATGTCATGGATATTGAGTGAAGCATAAAACTGtcacaagaagaagaaaaaggacCCTTCTTGGAAGACGAGGCCAGCTACTTTATCTAGATATTGTGTTTGTAAATAATAACATAATACAGCACATGGGTCAAGGAgctcctttctctctcatctgtcctctGGATTGCGAGCCAGGTACAAGGTCCTGCTTAGACCTCCAGATGAATCAGTCTCCGTGGTTTCCCTCCTCGTTATCAGTGTTATTATGATGCATCAGGCACTACGTGTTCTGAAAATGGACTGTATTAATATGTGAATTCTGCTTCATATACAGTGAAGAGAGAATAACGTGGGATAAGTTGAATAAATGTGACATAGGGTTTCATCAATGCTTTTGTTTCCCTTAGACGTTTTGGTGGATTCCATGACATTGCTGTGGTGTGCGTTTACATGCGTGTGTTTTCAACTCCAGGGTAACATCTAGACAACATGCAGTTGTAAAGCAGAAAAATGAAAACCTATAAGAGACCCATTTCACTCTTCCAGCTAGTTTGAACACATAACAAGGAAGCTTAAAGTACCCTGTAGAGATGTGTTATCCTGGACACCATACCCCAACAATCAGATACAATTTGCAATAATGACACCCAAACAAAAGACACCGATTTGCACTGTGAATTTAGCTACCTGCCACAAGAAATGATACACTGGTCTAGTACAGCCTATATAACAGGACAATGCTAAAGCACCCCTCCATTGACTTGATAGTGAGGGTTGATTTTGACCATCAGTAATTGGGGGATTGGAATACTGTGACCTGCACAGTGAggaccccacccccccacccccccccccccccccccccccccccacacacacacacacacacacaactctctgtGTAGTGCAATGCTGCTTAACTCTGAAATGTCAAGGGACACCAATCAGTATCTATTCTTCTATGACAAAAGTGatttaaatgtgtttattttttgtAATCCAGAACATGTAATTATGTGTCTCTTGTGGAGTGCTTGGTTTGCTTGTGAAAGTCAAAGTATCCCAACACTGTTTCTCTCCATTACGTCCACAACTGTCACTTGGGCTTGATCCAGCTTCATGTTCTGTATCTTTTAATGTGAGGACAATTCTAGTTCGAAGTCTGTATCTGTGGAGCATTTGTTGGCATTCTGAAGTGCATGCTATAAAAAAAGACAACATGTCAAATTGTAAAACAGGATGACAACATATATCACGTTCCAAGCGGTGTGTAAAATGAAATGCCATGTGAGAAAATCACATAAACATATTTAACTTTTAAA

Function

symbol description
kcnc2 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

NR:

description
potassium voltage-gated channel subfamily C member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04888 KCNC2, KV3.2; potassium voltage-gated channel Shaw-related subfamily C member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957031.1 False 3876 mRNA 0.54 4 14295967 14374190
XM_036957033.1 True 4157 mRNA 0.49 5 14295970 14378043

Neighbor

gene id symbol gene type direction distance location
LOC110499776 LOC106609772 coding upstream 7847 14282052 ~ 14288120 (+)
LOC110499766 LOC106576530 coding upstream 168381 14116546 ~ 14127586 (+)
LOC110500967 LOC106609789 coding upstream 180172 14103817 ~ 14115795 (+)
LOC118942888 NA coding upstream 277657 14017709 ~ 14018310 (+)
LOC110499761 LOC106597692 coding upstream 279724 14013772 ~ 14016243 (+)
LOC110499786 pmpcb coding downstream 100212 14478255 ~ 14482429 (+)
LOC110499788 psmc2 coding downstream 110375 14488418 ~ 14493003 (+)
LOC110499790 tspan33 coding downstream 136376 14514419 ~ 14533522 (+)
LOC118942889 LOC106609776 coding downstream 155742 14533785 ~ 14548855 (+)
LOC110490791 LOC106609779 coding downstream 171474 14549517 ~ 14565204 (+)
G1709690 NA non-coding upstream 26297 14269445 ~ 14269670 (+)
G1709688 NA non-coding upstream 27306 14268336 ~ 14268661 (+)
G1709686 NA non-coding upstream 28587 14267156 ~ 14267380 (+)
G1709679 NA non-coding upstream 55136 14240161 ~ 14240831 (+)
G1709668 NA non-coding upstream 79098 14205721 ~ 14216869 (+)
G1709735 NA non-coding downstream 12240 14390283 ~ 14391796 (+)
G1709743 NA non-coding downstream 37424 14415467 ~ 14415743 (+)
G1709749 NA non-coding downstream 48703 14426746 ~ 14427138 (+)
G1709751 NA non-coding downstream 52177 14430220 ~ 14440159 (+)
G1709752 NA non-coding downstream 52409 14430452 ~ 14434463 (+)
G1709592 NA other upstream 229284 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 345051 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 530511 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1194134 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1241998 13051847 ~ 13058457 (+)
G1709824 NA other downstream 277644 14655687 ~ 14657284 (+)
G1709840 NA other downstream 301439 14679482 ~ 14682208 (+)
G1710321 NA other downstream 755089 15133132 ~ 15133588 (+)
LOC110499821 LOC106609608 other downstream 1101105 15462544 ~ 15700037 (+)

Expression


Co-expression Network