Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499788 |
| gene name | psmc2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 14488418 ~ 14493003 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| psmc2 | Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2). |
| description |
|---|
| PREDICTED: 26S protease regulatory subunit 7 |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| K03061 | PSMC2, RPT1; 26S proteasome regulatory subunit T1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036957036.1 | True | 1544 | mRNA | 0.52 | 12 | 14488418 | 14493003 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499786 | pmpcb | coding | upstream | 5989 | 14478255 ~ 14482429 (+) |
| LOC110499784 | kcnc2 | coding | upstream | 110375 | 14295967 ~ 14378043 (+) |
| LOC110499776 | LOC106609772 | coding | upstream | 200298 | 14282052 ~ 14288120 (+) |
| LOC110499766 | LOC106576530 | coding | upstream | 360832 | 14116546 ~ 14127586 (+) |
| LOC110500967 | LOC106609789 | coding | upstream | 372623 | 14103817 ~ 14115795 (+) |
| LOC110499790 | tspan33 | coding | downstream | 21416 | 14514419 ~ 14533522 (+) |
| LOC118942889 | LOC106609776 | coding | downstream | 40782 | 14533785 ~ 14548855 (+) |
| LOC110490791 | LOC106609779 | coding | downstream | 56514 | 14549517 ~ 14565204 (+) |
| LOC110519829 | zc3hc1 | coding | downstream | 94557 | 14587560 ~ 14596988 (+) |
| LOC110490612 | ube2h | coding | downstream | 107077 | 14600080 ~ 14631285 (+) |
| G1709761 | NA | non-coding | upstream | 23532 | 14464663 ~ 14464886 (+) |
| G1709755 | NA | non-coding | upstream | 40543 | 14447612 ~ 14447875 (+) |
| G1709756 | NA | non-coding | upstream | 40886 | 14446012 ~ 14447532 (+) |
| G1709751 | NA | non-coding | upstream | 48259 | 14430220 ~ 14440159 (+) |
| G1709767 | NA | non-coding | downstream | 1901 | 14494904 ~ 14495399 (+) |
| G1709776 | NA | non-coding | downstream | 15317 | 14508320 ~ 14523155 (+) |
| G1709793 | NA | non-coding | downstream | 23689 | 14516692 ~ 14518026 (+) |
| G1709797 | NA | non-coding | downstream | 30383 | 14523386 ~ 14523944 (+) |
| G1709592 | NA | other | upstream | 421735 | 14065849 ~ 14066683 (+) |
| LOC110499758 | osbpl8 | other | upstream | 537502 | 13794979 ~ 13950916 (+) |
| G1709276 | zdhhc17 | other | upstream | 722962 | 13756186 ~ 13765456 (+) |
| G1708702 | NA | other | upstream | 1386585 | 13099841 ~ 13101833 (+) |
| LOC110490642 | LOC106597584 | other | upstream | 1434449 | 13051847 ~ 13058457 (+) |
| G1709824 | NA | other | downstream | 162684 | 14655687 ~ 14657284 (+) |
| G1709840 | NA | other | downstream | 186479 | 14679482 ~ 14682208 (+) |
| G1710321 | NA | other | downstream | 640129 | 15133132 ~ 15133588 (+) |
| LOC110499821 | LOC106609608 | other | downstream | 986145 | 15462544 ~ 15700037 (+) |
