LOC118942889 (LOC106609776)


Basic Information

Item Value
gene id LOC118942889
gene name LOC106609776
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14533785 ~ 14548855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957037.1
ACATAGATGAAatgaaaattgttttttttcagcAAAAGAGGGGAAAGTGGGAGCGCGAGGGGGTTGGAGCGCGTAGACTAGAGATCATGTTACAGTTTCAGACTTTTCACGGCAAGTTGTGGGGGAGGGTGAATCTGTTACTTTGATTTCTTTTTAATAGGCATATCCAACAAAAACAGCGGAAGGAATAGTTCCACTTGATTTTAATTGAATATCATGCATGCATCTTTTCGTTTTTTGGTGGCGATCGGATTGTGTGTAGGGAATTCCAGTGACAAATCAAGGACTACATGACAAAATGCTAAATGAAAAAGTTCGGGACTGTGTGAAAACTGGGAAAACGCTTCGTTTCATTGTATCATAATGTTACATTCGGCATCAAATGAACAAGAGCACTTCGTGCTATTTTTATTAACGGTTACTTTTTAGATTACTGGAATACAAAGTATAATTTTTTTCTTCCTGGAAACAAAGTTGCACCGTTGAATCTCCAAGATGTCTTCCCGTGGATGGAGTTCCATTGTTGGTGGGTTGGGGATGTTTTGCGTTTGGGCTGCCTCCTTTCTCGTTACTCATGCGGTAACGGTACAGAGAAACGAAACAATTTTCAATGATTTCTGCAAGAAAACTACAACATGTGAAGTGCTTAAATATAATACATGTCTTGGGTCCCCACTACCGTACACGCACACGTCTCTTGCCTTGGCTGAAGACTCAAGTACCCAAGACGAAGCATTTGAGAAGTTGGCCATGTGGTCTGGTCTGAGGAACGCCCCTCGCTGCTGGGCGGTCATCCAGCCCCTGCTGTGTGCCGTCTACATGCCCAAGTGTGACAACGGGCAGGTGGAGCTTCCCAGCCAGCACCTGTGCCAGGCTACGCGTCGCCCCTGCAGCATCGTGGACCAGGAGAGGGGCTGGCCCAACTTCCTCAAGTGTGAGGAGATGGACAAGTACCCCATGGGCTGCACGAACGAGGTGCAGAAGCTGAAGTTCAACACTTCAGGACACTGCGAAGCCCCCCTGGTGAAGACAGACGTTCAGGCCAGCTGGTACAAAGATGTGGAGGGCTGCGGCATCCAGTGCAACAACCCCCTGTTCACCGACGAGGAGCACTCGGACATGCACGCCTACATCGCTGTGTTCGGCACCGTCACCCTGCTCTGCACCTTTTTCACTCTGgCCACCTTTCTGGCGGACTGGAAGAATTCAAACCGTTACCCCGCCGTCATCCTCTTCTACATCAATACCTGTTTCTTCATGGGCAGTATCGGCTGGCTGGCTCAGTTCATGGATGGAGCTCGCAAAGAGATCGTGTGTAAGAGTGACAACACCATGCGTTTAGGGGAGCCCTCgtCTACCGAGACTCTGTCGTGTGTCATCATCTTCAGCCTCGTCTACTACTCCCTGATGTCTGGGGTGATCTGGTTTGTCATGCTGACCTACGCCTGGCACACGTCCTTCAAGGCCCTGGGCACCACCCACCAGCCCCTGTCGGGCAGGACCTCATACTTCCACATGGTCACATGGTCCGTCCCCTTCATCCTCACTGTGGCTATTCTAGCCACCGCTGAGGTGGACGGAGACTCTGTCAGTGGGATCTGTTTCGTGGGCTATAAGAACTACCGCTACCGTGCTGGCTTTGTGTTGGCTCCCATTGGAGTTGTGCTTGTCATTGGTGGCTATTTCCTCATACGAGGAGTCATGACGTTGTTCTCCATCAAGAGTAACCACCCGGGTCTTCTGAGTGAGAAGGCAGCGAGCAAAATCAACGAAACAATGCTAAGACTTGGTATATTTGGGTTCCTGGCGTTTGGCTTTGTCTTAATCACGTTTGGCTGCCACTTCTATGACTTCTTCAACCAGGCTGAGTGGGAGAAGAGCTTCAGAGAATATGTGTTGTGCGAGGCCAATGTGACGATCGCTCATCAGACCAACAAGCCGATCCCAGAATGTACTATCAAGAACCGTCCCAGTCTACTGGTGGAAAAGATTAATCTGTTCTCTATGTTCGGCACGGGCATCGCCATGAGCACCTGGGTGTGGACCAAGGCCACGATCCTCATCTGGAAACGCACCTGGTGCAAGGTTATCGGCCGTAGCGACGATGAGCCCAAGAGGATAAAGAAGAGCAAGATGATAGCCAAGGCCTTCTCCAAGCGCAAGGAGCTACACAAAGACCCGGAGAAGGAGCTGTCCTTCAGCATGCACACTGTCTCTCATGACGGGCCAGTAGCTGGCATCAACTTTGACCTGAACGGGGAGCCATCCAACGAGATGTCTTCAGCCTGGGCCCAGCATGTGACCAAGATGGTGGCCAGGAGGGGCGCCATTCTACCGCAGGACATCTCTGTCACCCCTACAGGGACACCTGTTCCACCGCCAGAGGAGAGGAACAAGCTGTGGATGGTGGAGGCGGAGATCTCCCCTGAGAtgatgaagaggaagaagaagaggaagaagaggaagaaggaggCGCGTCCTCTGGAGGAGCTGGCCGAACACCAGGGCTACCGTCAGCGAGAGTTTGGCACCAGCTCGGTGCCACGGCTACCCAAGCTGCCCGGCCACAGGAGCCTGGTGGCCAATCTGAGGCAGCACCAGGAGGCTGAGGACGTCCTTCCAGGCTCTTACCCAGAGTTTAGGCCCTCTCATCCCCTGCCCTACCAGGAGAGGTACGGAGGAGCCCTGGGGGCCTCCTCTAGCCAGAGGAGCAGgtaccctgacctcaaccccctctcCCTCAGCGACCTGCCAGAGGACCTCGGCCTGGGGCCTCGCTGCCGCCCCCaacaaccacccctctccttctggcAGCCCAATGGAGCGTTCCACTACTCCGGGGAGGTGGCGCCTATGGCAGGGCTGTCTGGGAGGACAGACCACGTGGGGAGGTCGCAGGGGGGTCAAAGGAGGGCGGAGTGGGGGCAGATCCACTCTAGAACCAACCTGATGGAGGCGGAGCTTATGGATGCTGACTCTGACTTCTGAGAGCAACCATGTGTGGTTGTGGGGTTTTCTGGGGGTTTTTACAGACTGTGAGAGAAAAGTGCTGGATACTTACACTTATGGTGCTCCCTTGTCACTGCCCAACAGTCAAGATGAAACAGGACTCAAGTCAAGTTAATTGGTCAGATCTGTTTCATTTAAAGGGAAGGGCTAAAGGAGAACTGATCTGGCCAGTTTGGGTCATCAGGGTGAGCTTCATGAAAGCTTCTTGGCTtatgtcccactgggcacaaactggttgaatcaacgttgtttccacatcatttcaaccccccaaaatctatgcgatgacgttgaatcaacgtggaaaactgattggatttgaacgTGAgggcatttcatatttttttcacccaacctTTAAATCctatgacatggtgacatttgttgttgatttcacattgaactGACGTTAGttaacaactcaaccaaatgtaaatcaaaactagacgttgaactgacttCTGTACCCAGTGGGGTGGCTCTGAATGTCTCTTAACAAATCACAGTAGCTACACTTTcataaaaatgtgtttaaaaatCTTTAAAATCTAtagctgcgtttagacaggcagcctaattctgatatttttaccactaattggtcttttgacatccttttcagagctgatctgattggtgaaaaaaagatcagaattagtCTGCCTGTCTAAATGAGCTAAATTATTTGAATAAAGCACTTTTCTGTTCTACAAGTGGTCTGGGTCTATAGTTGTGGAGAGAAATAGCTACAAAGCTTTTCGGAAACGCCTCCCAGACTCGTCAATGCTGTGTGACTTACCGAAAATAATTCCACTTGTGGCATTGGTCAGAAAACGGACATGATCACCCATGTTGCAACAACTAACTTCTGTTGTCAGAAACATTTCATTGAATGATGGCAGCAGAAGAGGCAGCTCAACTCTGAACGAATTGGATGAGGGTCACCATCACTGACATGATCCCGGGTCACTATCTCTTGGATCAGATATCACTCTTGTTGATTTCAGTCTCATAGCCATTCATTCATTATATGACTTCCAAGACTCTTCCAGGGATCTTGTCGTTGCCTGAGTCATTTCATGCATCTTAGGGTTCATGTAAGTAGTGTAAAgtggcttcctttccttgtctcttttCCACGTCATTGCTGACTTTAGAAAACTGGACCGGTGAAAACTAATTCCATGTAGGCGTTCTCCATATCGCTTTCAACTAGCCTGTGTTAATAAACTAAATATGACTAGATCTGTAACGATggagaggaagccactttagaTGATTGACATGCAGCCTCATATGATGCAGAAACTATCAGGCTCTGGAAGTTCCATGTCTTTGTGTATCATCGTCAACTAGTAGTCTGTACTTTTGTCACAAAAATATAGAACTGTTTTTATATTGCCTGGTGCAATCACACAGAAGTGAGCTTTTTTCACCTGAGGAGAAAGAGAATTGATTAGGTTTTTATACCAGTGGAAATGAAATACACAACTGAGTGGGAATCAATCACTTCATTTCTTGAAAGTGTTCTTGCACATGTTAGCTACATCAGTTAAATTGTTACGTTTTTTTTCTGTACAATTGTATTAAAAAGGGTTATTTTTTTACTGTAGTATTTCCACATTGTGTTTTACTCTATTGgcagcagtgcttgacttggactgaaatacagtaggtgccggtactcatttTACATGCTGGTACTGTTtttatttaggtgcaggagctccacaatacttttcaGCTAATATTCTAGAAGAAGAACAGGCAGTAGAAAAATGTAAGAtgccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtactcagctccggtgagctcctgcccaagttaAGCATACGTATAGACAACCTTGGCTATACTTTGTTGAGTTTTCTGTGTTTTTATTGTATAGGACAGTACTATATATTGCGTAATGTTGTCCTAGAGTTGAGCAAAACACCTTTATTCTATGCTTGTAATTATCTGCTACAATTTCTAAAGGCACGTGTCTTGTGCTTCTCTCTCTATGTGTAGTGCACCTATTCATTTATTGGGACCTAGGacgcagtggaggctgctgaggggaggatggctcataataatggctggaacggagcaaatgaaATGAATGGTGgtatttaataccattccactaattccactccagccattaccacaagcctgtcctccccaattaaggtgccaccaacctcctgtgcaagGATGCAGCATACTTGTACAATTCTAAGTTGTTAGACTGTATGTTTGGTTGGTTTTCCATGCTGAGGTACATTACAGATTTGCTCAGCAAAAGGGAAAATTCACTGAAGCTCGTGATGTAGTTGTACCGATGCTGTAACCAAAGTAATTTAGTATTATTGTCTTTGCGTCACACTCACAACAGTATAAAGATGGTGCCAAACTaaagatgtagaatcttaatttgatcaacctgttgcaggagaaatgtaaaacttgtactGCATTTGATGTTTAAAACGGCTTCTGAAGTTACGAAAAATGGATCCACCGCTACAAAAATggtcattaattataatccacataataactcacatttcctgttgctgcaggattatgtttttgctgtagcaaactggctcaaattaagatcctacatatgtagtGTCAATGTTATGATAGTCCTATTAGCTAATGTGCTATGTGTATCAGAGATTATTTATAAAATGTCCATGTCTGGAAGATAAATTAAGAAAGCTGTAAAGCACTGCAATGAAAATAACACTGTAACATTTGCTTAATACATTTGGACATTTCTTGCACCATCAGTGCAAACGAATGTAaatttccatttaaaaaatggtTTTGTGAAAAGACATCATCAAAAAAAGACACATCATATCTATCAAATGTATATGATATTTCTCATGTTGGATACTGACCAGCCAGTTTATTCCATGGGAAATGAACCTTGATATACTTTTTGAGGTATTGTGAACATTCTCAGAGTTTTCTTTTGCTGTCAAAGAGAATTAAATACAGTCCATCTCTTTGTGGGTTCTTTATATTGGCAAAATTCATTTCCCTATTGTCTATGTAGCTTACTGCTGTTTCTCTCCACACTCATATCTTGAACACAGAACTGTATTACTTTGATCATGAAGCTGTATTTTTgtataattatgtaaataaaagGAAACCTAGAA
>TU1958620
AAACAATTTTCAATGATTTCTGCAAGAAAACTACAACATGTGAAGTGCTTAAATATAATACATGTCTTGGGTCCCCACTACCGTACACGCACACGTCTCTTGCCTTGGCTGAAGACTCAAGTACCCAAGACGAAGCATTTGAGAAGTTGGCCATGTGGTCTGGTCTGAGGAACGCCCCTCGCTGCTGGGCGGTCATCCAGCCCCTGCTGTGTGCCGTCTACATGCCCAAGTGTGACAACGGGCAGGTGGAGCTTCCCAGCCAGCACCTGTGCCAGGCTACGCGTCGCCCCTGCAGCATCGTGGACCAGGAGAGGGGCTGGCCCAACTTCCTCAAGTGTGAGGAGATGGACAAGTACCCCATGGGCTGCACGGTATGGTAGATGCTCTCACTATGCATGTGTGCAGATGGTGTGCTAGGCCAATTATTGAGGGGGCTTCAGCACTGTCAACCCTGGGCACACACTGGTCGAATCAACGTTGTTTActcgtcatttcaatgaaattacattgaaccaacgtggagtAGACGTTGAATTgtagtctgtgcccagtgggtggccTCTCCATGGAGCCACCCATCTAGTCAACAGGCTAGTGCCATTGTTTTTCAGTCTAAAATGGCTGTCGATATTATActctataatactataatatattatatacagtgcattcagaaagtattctgacctcttgacgttttccacattttgttaccc

Function

NR:

description
PREDICTED: smoothened homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957037.1 False 6284 mRNA 0.46 12 14533785 14548855
TU1958620 True 716 TUCP 0.49 2 14534383 14537036

Neighbor

gene id symbol gene type direction distance location
LOC110499790 tspan33 coding upstream 263 14514419 ~ 14533522 (+)
LOC110499788 psmc2 coding upstream 40782 14488418 ~ 14493003 (+)
LOC110499786 pmpcb coding upstream 51356 14478255 ~ 14482429 (+)
LOC110499784 kcnc2 coding upstream 155742 14295967 ~ 14378043 (+)
LOC110499776 LOC106609772 coding upstream 245665 14282052 ~ 14288120 (+)
LOC110490791 LOC106609779 coding downstream 662 14549517 ~ 14565204 (+)
LOC110519829 zc3hc1 coding downstream 38705 14587560 ~ 14596988 (+)
LOC110490612 ube2h coding downstream 51225 14600080 ~ 14631285 (+)
LOC118942891 NA coding downstream 798585 15347098 ~ 15356958 (+)
LOC110499821 LOC106609608 coding downstream 913689 15462544 ~ 15700037 (+)
G1709797 NA non-coding upstream 9841 14523386 ~ 14523944 (+)
G1709776 NA non-coding upstream 10630 14508320 ~ 14523155 (+)
G1709793 NA non-coding upstream 15759 14516692 ~ 14518026 (+)
G1709767 NA non-coding upstream 38386 14494904 ~ 14495399 (+)
G1709800 NA non-coding downstream 16847 14565702 ~ 14567845 (+)
G1709806 NA non-coding downstream 21591 14570446 ~ 14571075 (+)
G1709804 LOC106609781 non-coding downstream 23687 14572542 ~ 14573998 (+)
G1709789 NA non-coding downstream 69758 14618613 ~ 14626027 (+)
G1709592 NA other upstream 467102 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 582869 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 768329 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1431952 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1479816 13051847 ~ 13058457 (+)
G1709824 NA other downstream 106832 14655687 ~ 14657284 (+)
G1709840 NA other downstream 130627 14679482 ~ 14682208 (+)
G1710321 NA other downstream 584277 15133132 ~ 15133588 (+)
LOC110500994 LOC106609603 other downstream 1173673 15700619 ~ 15737550 (+)

Expression


Co-expression Network