LOC110499821 (LOC106609608)


Basic Information

Item Value
gene id LOC110499821
gene name LOC106609608
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15462544 ~ 15700037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957071.1
CACTACCGAAGTTGGAACAATTTTCCTCGTCTCTCATTGGTAGGTTGTCATTCTGTTTGGGTGCAGTAGCTGGAAAAATGGCAGCTGATACAGGGAGATACCGGAGTGCTGTTAGCAAAAGCAAAGACCCTTCAGGCTTACTTATCTCCGTTATAAGGACCCTGTCCAGCAGCGATGACAAGcaggacagagagacggagaaggGCCGCCTGGAGGAGGCGTTTGAGAAGTGCGACCGGGACCTGGATGAGCAGATTGTCCAACACTACGCTGAGCTGACCACAGCCATCCGCACCTACCAGAGCATCACCGAGAGAATCACCAGCTCCCGTAACAAGATCAAAGGGGTGAAGGAGAACCTGCTGTCCTGTAAGATGCTGCTCCACTGCAAGAGGGATGAACTGAGGAAGCTGTGGATCGAAGGCATCGAGCACAAACACGTCCTCAACCTGCTGGACGAGATCGAGAGTATCAAGCAGGTCCCACAGAGACTGGAGGCCTGCATGGCCAGCAAGCACTACCTGCACGCCACTGACATGCTGGTGTCAGCGGTGGAGTCTCTGGAGGGCCCCCTGCTGCAGGTGGAGGGTCTGGGGGACCTGCGTCTGGAGCTCCACAGTAAGAAGCTCAACATCCACGTGGTCCTCATCGACGAGCTGCACCGGCACCTCTACATCAAGTCTACCAGCCGCCTGGGGACCAAGAACAAGGACAAGAACCAGGGACGCCACGGGGGCTCTACAACCAAAGACACGTCCCCTCTGCCCCAGCTGGACGTCAGCAGCCTGTCCACCCCTCGCAAGATGATGGACTCCTCCCAGTTCAGCACCCCAGGGACCACCAGCATGCGTGAGCTGCAGGCGCACCACGAGGCCCGCGAGGACCCTGACGTGCACCCGGAGGAGAACACCCAAGAGTTCATGGGCGTCCTCATCAAAGGCCTGGCCAAGCTCAAGAAGATCCCTGAGGCTGTCAAGGCCATCATGGAGCGCCTGGAGCCTGAGCTGAAGCAGATACTGAAGAGATCCACTACCCAAATAGCTGATCACGCctaccagagaggagagaacctAGCCACAGAGAGCCAGCCCAgGCTGCTGCTGGAACTGCTGGAGCTGCTGTTTGACAAGTTCAACGCGGTGGCTGCGGCCCACAGTGTGGTGCTGGCCCACCTGCAGCAGATCGTGGTGTCCCCCAACGGAGCCCAGGAGGGCATCAAGCTCTATGAGCTAGCCGACGTCTCTGCTAAGATCCAGACCGTGCTCCAgGTTCTGTTGATGGACTACCTGGATGTGAAGAACACTAGAAGTGCTGCCGAGCCCTCTGCCCAGCTCACCTACGCCAGCACCGGCAGCGAGTTCGCAGCCTTCTTCGCCAAGAAGAAACCCCAACGTGCCAAGCAGTCCCTCTTCAAGTTTGAGTCGTCGTCTCACGCCATCAGCATGAGTGCATACCtgagggaacagaggagagagctgTACAGCAAGAGTGGAGAACTACAagGTGGTGCAGATGATAACCTGAtcgaaggaggagagatgaagtTTGTCTGTAAACCTGGAGCCAGGAACATCACAGTGATCTTCCAGCCTCTCCTCAGGTTCATCAATGAGACAGAGCAGAACATGGGTTCACCGGGGCAGGCCAAGCAGTGCCAGCTCCGGACCTTCCTGACCTACTACATCAACGACCTGTTCCTGCACCAGGTCAGAACAGAGATCAACAAGGAGATCCGGGCCGTCAGCAAGACAGCAGACCCACTGAAAGTCCTGGCTAGTGCCGATACTATGAAGGTCCTGGCAGTGCAGAGGCCCCTGCTGCAGAGCACAGTAGTCGTGGAGAAGTCCATCCAGGACCTGATGACTCTGATGCAGGACCTGAGTGCCTACTCCAACCAGTTCCTGGAGATGGTCTGTGACAAGCTGAAGGAGTACAAGGAGGTCTGCAACACCTCGTACAGGGGCATAGTCCAGTGTGAGGAGAAGCTGACCATCAGTGCGTCGTGGTCTAAGGACGAGGACATCAGCCGACTGCTCCAGTCTCTCCCCAACTGGGCTAACATGGCCCAGCCCAGACAGCTCcgacagaagagagaggatgaggaggacttTACCAGGGCGGCGTTTGCCAAGGAGTCAGAGGTGCTGACGGGTAACCTGGGTGACAAGCTGATCCCGCAGAACGAGATCCTGCGTGACGTGAGCGACCTGAAGGCCCTTGCCAACCTGCAGGAGAGCATGGAGTGGCTGGCCTCCAGACTCAAAGGCTTCTTCATCAACCTGCCCCACGCTGCCAgtggaTCTCCAGGCTCGGACCCCCAGGTGACCAATGAGAGTGTCCGCAGCAGGGACCAGATCCTCCAGACTCTGACTGACCTGTCCAGGGCCTTCCAGGACATCGCTGACCGCTGTCTGCTGGTCCTCCACCTGGAGGTCAGagTGCATTGTTTCCACTACCTGATTCCCCTGGCCAAGCAGGGGAACTATGCCATAGTGGCCAACGTGGAGAGCATGGACTACGACCCCTTGGTGGTCAAACTCAACAAGGACATCAGCGCCATCGAGGAGGTGATGGGCGCCGCTCTGCAGCAGCACAAGTTCCAGTACATCTTTGAAGgtcttgGCCACCTGATCTCCTGTATTCTGATCAATGGAGCCCAGTACTTTAAGAGGATCAGTGAGTCTGGCATCAAGAAGATGTGTAGGAACATCTTTGTCCTGCAGCAGAACCTCACCAACATCACCATGTCTAGAGAGGCCGACCTGGACTTCGCTAGGCAGTACTATGAGATGCTGTACAACGCTGCAGATGAGTTGCTCAACCTGGTGGTGGACCAGGGCGTTCGCTACACCGAGCTGGAGTACATCCACGCCCTCAGCCTGCTGCAGAGGAGCCAGACGGGCGTGGGAGACCTGAGCACGCAGAACGTCCGGCTGCAGCGCCTCAAGGAGATCATCTGCGAGCAGGCAGCCTTCAAGCAGGCCACCAAGGACAAGAAGATCACTACTGTTTGAGAGGGGGGGACATTGGGAGGCTGTTGTTGGCAATGGTCTGTTTGTATTACTGtccagtgtttctcaacctcctGTCTGGATAAAGGGTTTAGATTAAAGCTAGTATTTTTTAGAGCTTGCCTAGCAGTGCCAGCTAACCGTCTGAGGGACTGGTCAGCACCTCCACAGGGACTGGTGTTGACCTGGGTTTGTAAAAGTCCTAACTGAGTCTTCATTAGATCCCATGGCGGACCGTAAATAACCATGTAATATGTTTTGGGGGTTGAGATAATGCTGGTAGGCTGTACATTAATTATTTACTGATTTAAGGGTTGAACTTAGTTACCAATATGCATATGTTGTTGTAACTCATCTGTTTATTCACTGGCAAGAATGCAGCCAGTTCCTCAAgaaatcactcacacacacacacacacacacacacacactctccaactTAAAAAATGACTCCCTTCAATCATCCCATATGTGGTCGGCCCTAGTCTCACCTGTGGAGAATGGGGGAATTTTCTGAGAGTCTGGCTTTGGGGCCTTTCTCATCTCATTGTCTCATTACATCTAACTGCTGCTCTCAATTACAGCTCTACCTCCAGCTCTCCCTCGTGGGCCCGCTGACTGTGTCTGCAATACCAGATGCCAGATTAGACTGTCTAGATTATCACTTCTCTCCCCCTGCTTGTGGCCATTTTGTGGCCATTCTTCTTCCCCAAGGACAAAGAAAGGAATTGGTTCCCCACCTCAGCTGTGGTTCACTCTATTTTTCTCTCACTTTTAGAATAATGTAGATTGGATATAATGTAGCTATAGCCGATTCTGATTAAAGTATTTGCCACTGTCCTGATATGCATTGACTGTGCTGCAGCGTTGAGGTGTACATGTGTGCTAGGGGATGAGGGCCAATGTATCCAGTACAATTTAAGTGTGTATTTTGTCCCAACACTCAAGGTCTTGAACTTAATAGGGATGTAATTGCAAATCACTACTCCCCTTCCTACCACTACAACTGTTAAAACTTCTGCTAGAACTATTCTAAAGTGAATACACTTCCAAGGAGTCACAAATCATTCCTTCCCCTGCATCCCCTCAGTATATTTAGTTAATTAACTCAGAGGAAAAGTACTTAACAAGAGcgggggagggaggaaagagaacaGGGGAGAGTTGTGGCAGTGCTGTTCACCAGAACCCAGCGCCACCATCCATCATAATGACATGTAGGCTGGGATCAATATGAGCCTTGTGGTTGCCGGAGGGATTGCCTCGTGCCATAGGAACAGCATTTGTTTTACTCAGCACACTCAAGACGTACACACACAATAAACACgtactatattacacacacacactatggaggTCTCTATGGCTTGCAGTACTCTGCACAACTGATGAGTTTTTTTCTGCTGATTTGGGAACAAGAGAACACTCCATCTGGATTTAAATGATCCCGTATATCGGACCCCTATACCCATATTTTAAATAATGGGGCAACTCATTGTAAAGATCTACAAATATATTTCACTAGTTTTTTTACGCTttgctttatttgtttgtttactaAGACATGTCGTTTTGCACATCTACAGTGTGTAATATGAGAGTGGTTTCATGTCTGATGAGTTTTTTCACAAACATCTGATAAGAATGGAGGTGAATGAGTCCCGGTGTGATTTAAGGATGTACTTTCTCCATTGTCTGTTAAACGTCCCTTTCAGACCAACACCTTGACTATCACTCCTTCACTCAATTAAAGAAAGATGACCTGCCATTGTGTACACTGATCTTGCTGAAATAAAACCTCAAAATTCCCCTGTGTA
>TU1959855
GAGTCTCTGGAGGGCCCCCTGCTGCAGGTGGAGGGTCTGGGGGACCTGCGTCTGGAGCTCCACAGTAAGAAGCTCAACATCCACGTGGTCCTCATCGACGAGCTGCACCGGCACCTCTACATCAAGTCTACCAGCCGCCTGGGGACCAAGAACAAGGACAAGAACCAGGGACGCCACGGGGGCTCTACAACCAAAGACACGTCCCCTCTGCCCCAGCTGGACGTCAGCAGCCTGTCCACCCCTCGCAAGATGATGGACTCCTCCCAGTTCAGCACCCCAGGGACCACCAGCATGCGTGAGCTGCAGGCGCACCACGAGGCCCGCGAGGACCCTGACGTGCACCCGGAGGAGAACACCCAAGAGTTCATGGGCGTCCTCATCAAAGGCCTGGCCAAGCTCAAGAAGATCCCTGAGGCTGTCAAGGCCATCATGGAGCGCCTGGAGCCTGAGCTGAAGCAGATACTGAAGAGATCCACTACCCAAATAGCTGATCACGCctaccagagaggagagaacctAGCCACAGAGAGCC

Function

NR:

description
PREDICTED: exocyst complex component 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957071.1 False 4828 mRNA 0.52 18 15462544 15700037
TU1959855 True 532 TUCP 0.61 3 15479148 15490871

Neighbor

gene id symbol gene type direction distance location
LOC118942891 NA coding upstream 113836 15347098 ~ 15356958 (+)
LOC110490612 ube2h coding upstream 831259 14600080 ~ 14631285 (+)
LOC110519829 zc3hc1 coding upstream 865556 14587560 ~ 14596988 (+)
LOC110490791 LOC106609779 coding upstream 897340 14549517 ~ 14565204 (+)
LOC118942889 LOC106609776 coding upstream 913689 14533785 ~ 14548855 (+)
LOC110500994 LOC106609603 coding downstream 582 15700619 ~ 15737550 (+)
col7a1l LOC106576558 coding downstream 79538 15779575 ~ 15866718 (+)
LOC110490786 LOC106576567 coding downstream 170153 15870190 ~ 15889111 (+)
LOC110518420 LOC106593864 coding downstream 202894 15902931 ~ 15905674 (+)
copg2 copg2 coding downstream 208407 15908444 ~ 15923791 (+)
G1710732 NA non-coding upstream 414 15461883 ~ 15462130 (+)
G1710619 NA non-coding upstream 125675 15336624 ~ 15336869 (+)
G1710606 NA non-coding upstream 148310 15313831 ~ 15314234 (+)
G1710603 NA non-coding upstream 150250 15312084 ~ 15312294 (+)
G1710880 NA non-coding downstream 167609 15867646 ~ 15869320 (+)
G1710890 NA non-coding downstream 189792 15889829 ~ 15890156 (+)
G1710896 NA non-coding downstream 212870 15912907 ~ 15913707 (+)
G1710901 mest non-coding downstream 231061 15931098 ~ 15936421 (+)
G1710907 NA non-coding downstream 246320 15946357 ~ 15946644 (+)
G1710321 NA other upstream 328956 15133132 ~ 15133588 (+)
G1709840 NA other upstream 780336 14679482 ~ 14682208 (+)
G1709824 NA other upstream 805260 14655687 ~ 14657284 (+)
G1709592 NA other upstream 1395861 14065849 ~ 14066683 (+)
LOC110499847 LOC106609634 other downstream 825540 16318043 ~ 16528816 (+)
G1711795 NA other downstream 1019883 16719920 ~ 16720552 (+)
LOC110499863 tap26 other downstream 1040366 16740369 ~ 16742407 (+)
G1710736 NA non-coding upstream 13390 15465223 ~ 15465758 (+)
G1710735 NA non-coding upstream 15000 15463949 ~ 15464148 (+)
G1710784 NA non-coding downstream 124749 15615620 ~ 15617131 (+)
G1710792 NA non-coding downstream 159484 15650355 ~ 15651386 (+)
G1710809 NA non-coding downstream 192864 15683735 ~ 15738481 (+)
G1710810 NA non-coding downstream 193502 15684373 ~ 15684954 (+)
G1710813 NA non-coding downstream 202011 15692882 ~ 15694735 (+)

Expression


Co-expression Network