Item | Value |
---|---|
gene id | col7a1l |
gene name | LOC106576558 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048585.1 |
NCBI id | CM023239.2 |
chromosome length | 64935962 |
location | 15779575 ~ 15866718 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: collagen alpha-1(VII) chain |
id | description |
---|---|
K16628 | COL7A; collagen type VII alpha |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036957076.1 | False | 7643 | mRNA | 0.53 | 81 | 15779575 | 15866718 |
XM_036957077.1 | False | 7640 | mRNA | 0.53 | 81 | 15779575 | 15866718 |
XM_036957078.1 | True | 7442 | mRNA | 0.53 | 78 | 15779575 | 15866718 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110500994 | LOC106609603 | coding | upstream | 42025 | 15700619 ~ 15737550 (+) |
LOC110499821 | LOC106609608 | coding | upstream | 79538 | 15462544 ~ 15700037 (+) |
LOC118942891 | NA | coding | upstream | 430867 | 15347098 ~ 15356958 (+) |
LOC110490612 | ube2h | coding | upstream | 1148290 | 14600080 ~ 14631285 (+) |
LOC110519829 | zc3hc1 | coding | upstream | 1182587 | 14587560 ~ 14596988 (+) |
LOC110490786 | LOC106576567 | coding | downstream | 3472 | 15870190 ~ 15889111 (+) |
LOC110518420 | LOC106593864 | coding | downstream | 36213 | 15902931 ~ 15905674 (+) |
copg2 | copg2 | coding | downstream | 41726 | 15908444 ~ 15923791 (+) |
LOC110499838 | LOC106609638 | coding | downstream | 424755 | 16291473 ~ 16298592 (+) |
LOC110499847 | LOC106609634 | coding | downstream | 451325 | 16318043 ~ 16528816 (+) |
G1710809 | NA | non-coding | upstream | 41094 | 15683735 ~ 15738481 (+) |
G1710813 | NA | non-coding | upstream | 84840 | 15692882 ~ 15694735 (+) |
G1710810 | NA | non-coding | upstream | 94621 | 15684373 ~ 15684954 (+) |
G1710792 | NA | non-coding | upstream | 128189 | 15650355 ~ 15651386 (+) |
G1710784 | NA | non-coding | upstream | 162444 | 15615620 ~ 15617131 (+) |
G1710880 | NA | non-coding | downstream | 928 | 15867646 ~ 15869320 (+) |
G1710890 | NA | non-coding | downstream | 23111 | 15889829 ~ 15890156 (+) |
G1710896 | NA | non-coding | downstream | 46189 | 15912907 ~ 15913707 (+) |
G1710901 | mest | non-coding | downstream | 64380 | 15931098 ~ 15936421 (+) |
G1710907 | NA | non-coding | downstream | 79639 | 15946357 ~ 15946644 (+) |
G1710321 | NA | other | upstream | 645987 | 15133132 ~ 15133588 (+) |
G1709840 | NA | other | upstream | 1097367 | 14679482 ~ 14682208 (+) |
G1709824 | NA | other | upstream | 1122291 | 14655687 ~ 14657284 (+) |
G1711795 | NA | other | downstream | 853202 | 16719920 ~ 16720552 (+) |
LOC110499863 | tap26 | other | downstream | 873685 | 16740369 ~ 16742407 (+) |
LOC110501009 | LOC105020375 | other | downstream | 1047502 | 16914013 ~ 16973778 (+) |