copg2 (copg2)


Basic Information

Item Value
gene id copg2
gene name copg2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15908444 ~ 15923791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957080.1
TCATTTCCGTCGACATAGACACAGATAGGAAGGTTGCATTTGGCGACGTGGAAGTGACTAGTCGTCTGTTGTGAGGCTGTACACCAACCACACTGATCCACAAACATTCCGTAACAATGATTAAGAAATTTGACAAGAAGGACGAAGAGTCTGGAAGTGGCTCTAACCCTTTCCAGCATCTTGAAAAGAGTGCAGTGTTGCAAGAGGCTCGCATCTTCAACGAGACTCCGATCAACCCCAGAAGATGTCTCCACATCCTCACCAAGATCATTTACCTACTCAACCAGGGGGAGCACTTTGGAACTATGGAGGCGACCGAGGCCTTCTTTGCAATGACCAGGCTCTTCCAGTCCAATGATCAAACCCTGAGAAGGATGTGCTACCTGACCATCAAGGAGATGGCCAACATCTCTGAGGATGTCATCATTGTCACCAGCAGCCTAACCAAGGACATGACTGGCAAGGAGGATGTGTACAGAGGACCTGCCATCAGAGCTCTCTGCAGGATCACggatACCACCATGCTGCAGGCCATTGAGAGATACATGAAACAGGCCATTGTTGACAAAGTGCCCAGTGTGTCCAGCTCTGCCCTGGTCTCATCTCTGcACATGGTTAAGATGAGCTACGACGTGGTGAAGCGCTGGGTGAACGAGGCACAGGAGGCAGCTTCCAGTGACAACATCATGGTCCAGTACCACGCCCTGGGCCTGCTGTACCACCTGAGGAAGAATGACCGACTGGCCGTATCCAAGATGCTCAACAAGTTCACCAAGTCTGGCCTCAAGTCCCCCTTTGCCTACTGCATGCTCATCCGCATCGCCAGCAAGCTGTTGGAGGAGACCGAGGCAGGACATGACAGTCCCCTGTTTGACTTCATTGAGAGCTGTCTGAGGAACAAGCATGAGATGGTGGTGTACGAGGCAGCCTCGGCCATAGTCCACATGCCCAACTGTACTGCCAGAGAGCTGGCCCCCGCTGTCTCTGTCCTGCAGCTGTTCTGCAGCTCTCCCAAAGCAGCCCTGAGATACGCAGCTGTCAGGACCCTCAACAAGGTGGCGATGAAGCACCCGTCGGCGGTGACTGCGTGCAACCTGGACCTGGAGAACCTGATCACGGACTCGAACCGCAGCATCGCCACGCTGGCCATCACCACGCTGCTGAAGACAGGCAGCGAGAGCAGTGTGGACCGCCTCATGAAACAGATCTCCTCCTTCGTCTCTGAGATCTCTGACGAGTtcaagGTGGTGGTTGTGCAGGCCATCAGTGCCCTGTGTCAGAAGTATCCCAGAAAGCACAGCGTCATGATGAACTTCCTGTCCAACATGCTCCGAGACGACGGTGGCTTTGAGTACAAGCGGGCCATCGTGGACTGCATCATCAGCATCATCGAGGAGAACCCAGAGAGCAAGGAGACAGGGCTGGCCCACCTGTGTGAGTTCATCGAGGACTGTGAGCACACGGTGCTGGCCACCAAGATCCTTCACCTGCTGGGCAAGGAGGGCCCGCGCACGCCCTCGCCATCCAAGTACATCCGCTTCATCTTCAACCGCGTGGTGCTGGAGAGCGAGGCTGTCAGAGCCGCTGCGGTCAGTGCTCTGGCTAAATTTGGAGCCCAGAATGATGACCTTCTCCCCAGTGTGTTAGTCCTGATGCAGAGGTGTATGATGGACAGTGATGACGAGGTGAGGGACAGAGCCACCTTCTACATGAACGTGCTGCAGCAGAAGCAGAAAGCCCTCAACGCTGCCTACATTTTCAACGGTCTGTCGGTGTCTGTCCCGGGTCTGGAGAAGTCCCTTCACCAGTACACCCTGGAGCCCACAGAGAAGCCCTTCGATATGAAGTCTGTTCCCCTGGCCAACACACCCATTACAGAGCAGAAGACCGAATTCGCTCCTGTGGCCACTAGCAAGCTTCCAGAGAAACCAGGCCCGACGCGCCAAGACATCTACCAGGAACAACTGGCAGCCATTCCAGAATTCCAGGGCCTGGGTTCTCTCTTCAAGACGTCGGAGGCGGTGCAGCTGACCGAGGCGGAGACTGAGTATGTGGTGCGCTGCGTCAAGCACACCTTCGCCAGacacatggtgtttcagttcgaCTGCACCAACACGCTCAATGACCAGCTCCTGCAGAAGGTTATGGTTCAGATGGAGCCGTCGGAGGCCTACGAGGTTCTCCACTACGTCCCTGCTGCTAACCTGCCCTACAGCCAGCCTGGCTCCTGCTACAGCCTGGTCAGACTGCCTGAAGATGACCCCACCGCAGTGTCCTGTACGTTCAGCTGTACTCTGAAGTACCTGGTGAAAGACTGCGACCCCAACACAGGAGAGCCTGATGACGACGGTTACGATGACGAATATGTGCTGGAAGACTTGGAGGTGACTGTAGCAGACCACATCCAGAAGGTGTTGAAGCCTAACTTTGCCGCAGCCTGGGACGAGGTGGGAGACGACTTTGAGAAGGAGGAGACGTTCGCCCTGGCCTCTGTCAGAACGTTAGACGAGGctgttggtaacatcatcagttTCCTGGGCATGCAGCCCTGCGAGCGTTCAGACAAGGTCCCAGAAAACAAGAACTCACACATCCTCTTCCTTGCCGgTGTGTTCCGGGGGGGTCATGACGTGCTGGTACGCTCGCGCCTGGCCCTGGCCGACGGTGTCACTATGCAGGTGACGGTCCGCAGCTCGGATGAGACTGTTGTTGACATCATCCTAGCCTCCGTGGGCTAGAGGGGCCTGTTGTTCACCAACAACAACGTGTGAATACAATGGCATATTCTGATTTGTTTTGTCCACTTTTTCCCCATTCACAATATTCTCTAGGCAATGTCCTCCAGTGCTTTATGTCGTTGGAATGTGTCTTGTGTTTTTGGGTAGTCCGAGATGGAAAACATtatggtgaggtgtgtgtactaCTGGCACCCTTCAACACAACTCATCTCTGTAGACTggccccagatctgtttgtgctgtataacCAACTCCAATGATCATTCATAGGTGTTTGCAaggcagcacaaacagatctgggaccaggctagtgtcATTAATGGCCCACGTTTTATCAAATCTATTAAATGTTGACCATGGAAATACTGAA

Function

symbol description
copg2 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

NR:

description
Coatomer subunit gamma-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17267 COPG; coatomer subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957080.1 True 3108 mRNA 0.54 21 15908444 15923791

Neighbor

gene id symbol gene type direction distance location
LOC110518420 LOC106593864 coding upstream 2770 15902931 ~ 15905674 (+)
LOC110490786 LOC106576567 coding upstream 19333 15870190 ~ 15889111 (+)
col7a1l LOC106576558 coding upstream 41726 15779575 ~ 15866718 (+)
LOC110500994 LOC106609603 coding upstream 170894 15700619 ~ 15737550 (+)
LOC110499821 LOC106609608 coding upstream 208407 15462544 ~ 15700037 (+)
LOC110499838 LOC106609638 coding downstream 367682 16291473 ~ 16298592 (+)
LOC110499847 LOC106609634 coding downstream 394252 16318043 ~ 16528816 (+)
LOC110499856 LOC106609654 coding downstream 670636 16594427 ~ 16600458 (+)
LOC110499844 LOC106609653 coding downstream 680468 16604259 ~ 16608641 (+)
LOC110499863 tap26 coding downstream 816578 16740369 ~ 16742407 (+)
G1710890 NA non-coding upstream 18288 15889829 ~ 15890156 (+)
G1710880 NA non-coding upstream 39124 15867646 ~ 15869320 (+)
G1710809 NA non-coding upstream 169963 15683735 ~ 15738481 (+)
G1710901 mest non-coding downstream 7307 15931098 ~ 15936421 (+)
G1710907 NA non-coding downstream 22566 15946357 ~ 15946644 (+)
G1710912 LOC105893511 non-coding downstream 35752 15959543 ~ 15960536 (+)
G1710915 LOC106576479 non-coding downstream 39622 15963413 ~ 15966257 (+)
G1710918 NA non-coding downstream 43759 15967550 ~ 15967792 (+)
G1710321 NA other upstream 774856 15133132 ~ 15133588 (+)
G1709840 NA other upstream 1226236 14679482 ~ 14682208 (+)
G1709824 NA other upstream 1251160 14655687 ~ 14657284 (+)
G1711795 NA other downstream 796129 16719920 ~ 16720552 (+)
LOC110501009 LOC105020375 other downstream 990429 16914013 ~ 16973778 (+)

Expression


Co-expression Network