LOC110501003 (LOC106576525)


Basic Information

Item Value
gene id LOC110501003
gene name LOC106576525
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16719898 ~ 16740303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957111.1
GATAGCGTCCGTAGAACTCAATGTATTTCGGTACACCCAACATGGCTGCCACATTCGTGCTAAGAAAATCATCGTCGTTCAGTTGCAACTAGTTATGCCTGATTATACTGTAAAGAGGGGAGTCATTCTTGGACCTGCTGTAAACAGGTCTAGGTTAGAGTTTTTATTCAATGGCATCTTCCATTAACTCTCTGGAAGCGATTCAGAAAAAAATAGATGCTGTTAaactcttcctctctgtttcacTGAGCATCGCCAATGCCCACACTGTGGATTTCTACACTTGCGATGTATGGGACCAGTTCATGGCTGTGCCACCCGTGGAGGTCTTGACAGAGATCACTTTGAATGGTGACCACAAGAGGGCGCCAGAACGCTACATAAATCATGGCAGTGGTACCACCAAGAAGATCACCTTTGGTTTCTGTGATGATAGTAAGCGCCTGGTGGATGTGGCTGAGCTCTTGGAGGCTGCCTATGCCCACTCCCTGCCTGGCCTCGGGGTCTGTGTGGGCCGCACAGAGCTACTGCAATCCCTCAGACACACTGACAACGCTCAACCCCTGGAGGAAGTTCCAGCTGCTGTGGTGGAGAGTGAAGAGTTTATGAACTCCAAGAAGTCCCACGAGGTGCAGGCCATGTCAGAGGTGGTGGCCAGCCTAGCCCAGCGCTGCCGGGTCAAACAGGTGATTGATGTGGGCTCGGGGAAAGGTTACCTGTGCTCCTTCCTGTCGCTGCAGTACGGCCTCCAGGTGTACGGCATCGACTCGTCCAGCGTCAACACGCACGGCGCccaggagaggaacaggaagctCAAGAAGTACTCCCGGGCCTACCAGAGGCACAGCAAAGCCAATAGGACTCCGACAGTGATGCCTCCTTCAGGCCAGAAGGATATTGCAcccggtgagagagagagaggggatatggTTAAGACGAGTGGGGATGccgagaaggaggaggggaaggggagaagagatggggaggcACAGACCAACACAACAGGGTTAACAGATCAGAATGAGGAAGATGCAATGACATCACTTACCTCCGCCATTTTGTTAGAGGACAATTCCCTTCCAGGGTTGGACCAAAGTGACCCAGCCTCAGCTCCAGAGGATCCTTTTCTCAGTGCCCTGTGTGTGGGCATGGTGGAGCCCATCTCCCCCCGGGTTCCCCCCAGTGAGTTGagcctggaggagagggagaggaggaagagggagaacctggagaggAAGGCCAGGAGCTGGGTTAACAGTGGTGGCATGGGCAGCGGCATGCTGTACTCACCTCTGACCTCCTACGTTACCGCGGCGACGGAGCTCAAAGAAATTATTGGGGAGTTAGAGGATGCGGTCATGGTTGGTCTGCACACGTGTGGAGACCTGGCGCCCAGCACCCTGCGCATGTTTGTGGCCAAACGGGAGCTCCTCTCCGTCTGCAGCGTTGGCTGCTGCTACCACCTTCTCTCTGAGGAGTTTGATCCCACCAGACAAGaGTGTCcaagcagcagcgtatgtggttTCCCCCTGAGTGGCTACCTGAGGGAGCAGTCCTGGTTCTGTGGCAGAAATGCCAGGATGTCGGCGTGTCTGGCTTTGGAGAGAGTTGCCAAGGGCCAAGGGATTCAGATGGAGTCACTCTTCTATAGGGCCGTCCTCCATGTGATTCTAAGGGATCACTACAGCTCCTTTAAAAGCGAGAAGCGTGTGGGGAATGTCTACTCCAAGGCCACCTCGTTCGTGGACTACGTCTGGAGAGCCCTCCGGAGGCTGGAGCTGGATGAGTCAAAGCTCTCTGACAGTGTCATACAGGGTTACCACGACACATACCGACCCAGGATGGTTGAGATGGAGGCCTTTAACATGCTGAAGGTGACTTTGGCTCCCTGCATCGAGGGTCTGATTCTCCTGGACCGCCTCTGCTACCTGAAAGAGCAGGAAGACGTGGCGTTCTCCACTCTGGTGCAGCTCTTTGATCCACTGTTGTCGCCACGCTGTTACGGAGTTGTCGGAGTGAAGACACCTGGGATGGAGTTGTCAGAGTGAAGGCACTTAGGTCGGAGTGAAGGCATCTGGGATGGAGTTGTCGGAGTGAAGGCACATGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTTGGAGTGAAGGCACCTGGGACGGAGTTGTCAGAGTGAAGGCACCTGGGATGGCATCATAGAGTTCTTGGAGATGGGACAACCTGCATTTCCTGCCAtttgtatgttttatttttttcaatttgCTGACCATGATTTTAGCAAGGGTTTAATGTGATTATGTACTGCTTACTCAGTCACGTACAGATGTGGGAATGGGAtcattgtttagtgttttctctACTTTTGCCTTCTTTGGTTTCTGCCAGTCATACTGTGCTATGGGGTGTACTATACCATATTGTATTAATAAATCATTTTTAGAAGATAAAAAA
>XM_036957112.1
TAAGGATAGCGTCCGTAGAACTCAATGTATTTCGGTACACCCAACATGGCTGCCACATTCGTGCTAAGAAAATCATCGTCGTTCAGTTGCAACTAGTTATGCCTGATTATACTGTAAAGAGGGGAGTCATTCTTGGACCTGCTGTAAACAGGTCTAGGTTAGAGTTTTTATTCAATGGCATCTTCCATTAACTCTCTGGAAGCGATTCAGAAAAAAATAGATGCTGTTAaactcttcctctctgtttcacTGAGCATCGCCAATGCCCACACTGTGGATTTCTACACTTGCGATGTATGGGACCAGTTCATGGCTGTGCCACCCGTGGAGGTCTTGACAGAGATCACTTTGAATGGTGACCACAAGAGGGCGCCAGAACGCTACATAAATCATGGCAGTGGTACCACCAAGAAGATCACCTTTGGTTTCTGTGATGATAGTAAGCGCCTGGTGGATGTGGCTGAGCTCTTGGAGGCTGCCTATGCCCACTCCCTGCCTGGCCTCGGGGTCTGTGTGGGCCGCACAGAGCTACTGCAATCCCTCAGACACACTGACAACGCTCAACCCCTGGAGGAAGTTCCAGCTGCTGTGGTGGAGAGTGAAGAGTTTATGAACTCCAAGAAGTCCCACGAGGTGCAGGCCATGTCAGAGGTGGTGGCCAGCCTAGCCCAGCGCTGCCGGGTCAAACAGGTGATTGATGTGGGCTCGGGGAAAGGTTACCTGTGCTCCTTCCTGTCGCTGCAGTACGGCCTCCAGGTGTACGGCATCGACTCGTCCAGCGTCAACACGCACGGCGCccaggagaggaacaggaagctCAAGAAGTACTCCCGGGCCTACCAGAGGCACAGCAAAGCCAATAGGACTCCGACAGTGATGCCTCCTTCAGGCCAGAAGGATATTGCAcccggtgagagagagagaggggatatggTTAAGACGAGTGGGGATGccgagaaggaggaggggaaggggagaagagatggggaggcACAGACCAACACAACAGGGTTAACAGATCAGAATGAGGAAGATGCAATGACATCACTTACCTCCGCCATTTTGTTAGAGGACAATTCCCTTCCAGGGTTGGACCAAAGTGACCCAGCCTCAGCTCCAGAGGATCCTTTTCTCAGTGCCCTGTGTGTGGGCATGGTGGAGCCCATCTCCCCCCGGGTTCCCCCCAGTGAGTTGagcctggaggagagggagaggaggaagagggagaacctggagaggAAGGCCAGGAGCTGGGTTAACAGTGGTGGCATGGGCAGCGGCATGCTGTACTCACCTCTGACCTCCTACGTTACCGCGGCGACGGAGCTCAAAGAAATTATTGGGGAGTTAGAGGATGCGGTCATGGTTGGTCTGCACACGTGTGGAGACCTGGCGCCCAGCACCCTGCGCATGTTTGTGGCCAAACGGGAGCTCCTCTCCGTCTGCAGCGTTGGCTGCTGCTACCACCTTCTCTCTGAGGAGTTTGATCCCACCAGACAAGaGTGTCcaagcagcagcgtatgtggttTCCCCCTGAGTGGCTACCTGAGGGAGCAGTCCTGGTTCTGTGGCAGAAATGCCAGGATGTCGGCGTGTCTGGCTTTGGAGAGAGTTGCCAAGGGCCAAGGGATTCAGATGGAGTCACTCTTCTATAGGGCCGTCCTCCATGTGATTCTAAGGGATCACTACAGCTCCTTTAAAAGCGAGAAGCGTGTGGGGAATGTCTACTCCAAGGCCACCTCGTTCGTGGACTACGTCTGGAGAGCCCTCCGGAGGCTGGAGCTGGATGAGTCAAAGCTCTCTGACAGTGTCATACAGGGTTACCACGACACATACCGACCCAGGATGGTTGAGATGGAGGCCTTTAACATGCTGAAGGTGACTTTGGCTCCCTGCATCGAGGGTCTGATTCTCCTGGACCGCCTCTGCTACCTGAAAGAGCAGGAAGACGTGGCGTTCTCCACTCTGGTGCAGCTCTTTGATCCACTGTTGTCGCCACGCTGTTACGGAGTTGTCGGAGTGAAGGCATCTGGGATGGAGTTGTCGGAGTGAAGGCACATGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTTGGAGTGAAGGCACCTGGGACGGAGTTGTCAGAGTGAAGGCACCTGGGATGGCATCATAGAGTTCTTGGAGATGGGACAACCTGCATTTCCTGCCAtttgtatgttttatttttttcaatttgCTGACCATGATTTTAGCAAGGGTTTAATGTGATTATGTACTGCTTACTCAGTCACGTACAGATGTGGGAATGGGAtcattgtttagtgttttctctACTTTTGCCTTCTTTGGTTTCTGCCAGTCATACTGTGCTATGGGGTGTACTATACCATATTGTATTAATAAATCATTTTTAGAAGATAAAAAA
>TU1961337
tccttccctctctcccatctctccctcctccatctctctacctcttctctgcctccccccctctctccctccttccttccctctctacctcttgtctgcctcccgccctctctccctccttccttccctctctaccaGCTCTCTGACAGTGTCATACAGGGTTACCACGACACATACCGACCCAGGATGGTTGAGATGGAGGCCTTTAACATGCTGAAGGTGACTTTGGCTCCCTGCATCGAGGGTCTGATTCTCCTGGACCGCCTCTGCTACCTGAAAGAGCAGGAAGACGTGGCGTTCTCCACTCTGGTGCAGCTCTTTGATCCACTGTTGTCGCCACGCTGTTACGGAGTTGTCGGAGTGAAGGCATCTGGGATGGAGTTGTCGGAGTGAAGGCACATGGGACGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGGCGGAGTTGTCGGAGTGAAGGCACCTGGGACGGAGTTGTCGGAGTGAAGGTGAAGGCACCTGGGACGGAGTTGTTGGAGTGAAGGCACCTGGGACGGAGTTGTCAGAGTGAAGGCACCTGGGATGGCATCATAGAGTTCTTGGAGATGGGACAACCTGCATTTCCTGCCAtttgtatgttttatttttttcaatttgCTGACCATGATTTTAGCAAGGGTTTAATGTGATTATGTACTGCTTACTCAGTCACGTACAGATGTGGGAATGGGAtcattgtttagtgttttctctACTTTTGCCTTCTTTGGTTTCTGCCAGTCATACTGTGCTATGGGGTGTACTATACCAT

Function

NR:

description
methyltransferase-like protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957111.1 False 2610 mRNA 0.53 12 16719898 16740299
XM_036957112.1 False 2565 mRNA 0.53 13 16719898 16740303
TU1961337 True 813 TUCP 0.53 6 16719933 16724269

Neighbor

gene id symbol gene type direction distance location
LOC110499846 LOC106576554 coding downstream 19331 16613901 ~ 16700567 (-)
LOC110499843 LOC105020363 coding downstream 126686 16573934 ~ 16593212 (-)
LOC110514342 LOC106609637 coding downstream 173720 16530059 ~ 16546178 (-)
LOC118936578 st8sia1 coding downstream 435551 16259629 ~ 16284347 (-)
LOC118942892 NA coding downstream 526961 16191209 ~ 16192937 (-)
LOC118942893 LOC105020372 coding upstream 18497 16758800 ~ 16777177 (-)
LOC110499869 NA coding upstream 441143 17181446 ~ 17187956 (-)
LOC110518924 LOC106576509 coding upstream 582344 17322647 ~ 17325861 (-)
LOC110499875 LOC106576481 coding upstream 735832 17476135 ~ 17481386 (-)
LOC110499880 LOC106576467 coding upstream 1389796 18130099 ~ 18134351 (-)
G1711788 NA non-coding downstream 9596 16709962 ~ 16710302 (-)
G1711749 NA non-coding downstream 69797 16649685 ~ 16650101 (-)
G1711723 NA non-coding downstream 107238 16612215 ~ 16612660 (-)
G1711722 NA non-coding downstream 110780 16604222 ~ 16609118 (-)
G1711946 NA non-coding upstream 1801 16742104 ~ 16742404 (-)
G1711958 NA non-coding upstream 31903 16772206 ~ 16773349 (-)
G1711967 NA non-coding upstream 51898 16792201 ~ 16795933 (-)
G1711970 NA non-coding upstream 59988 16800291 ~ 16809851 (-)
G1711971 NA non-coding upstream 64900 16805203 ~ 16811114 (-)
G1711655 LOC106609634 other downstream 278760 16439773 ~ 16441138 (-)
G1711339 NA other downstream 981380 15736992 ~ 15738518 (-)
G1710680 NA other downstream 1364153 15353964 ~ 15355745 (-)
G1710416 NA other downstream 1786490 14932994 ~ 14933408 (-)
G1711947 LOC106609625 other upstream 2537 16742840 ~ 16745864 (-)
G1712050 NA other upstream 262311 17002614 ~ 17003700 (-)
G1712424 NA other upstream 555216 17295519 ~ 17295735 (-)
G1713604 NA other upstream 1730210 18470513 ~ 18470817 (-)

Expression


Co-expression Network