LOC110499863 (tap26)


Basic Information

Item Value
gene id LOC110499863
gene name tap26
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16740369 ~ 16742407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576924.2
CTGAGACCACCACGACGTCATAACAATGCGACGAAAAGCACATGCGACGTAAACACATGAAACGTGCGATATTTTGCTAAAAATTTGTGAAATGGCACCACCAGCACAGCAGAAAATTAAGACCAAGGGCACATTTGACGGAAAACGTGCCAATAGAAACCAACCCTACAATCGACCAGGGGGCAGGAAGAAGTGGGTCTCTGAGCACAAAGTATTCGACGGCAGTATTGGAGAAGGCCAGGGCTTTGCCTTCAAAAGGAAGGAGAAAGTGAAACATGAATACAACAAACTGCTtcggaaggagaggaggaagaacacAGAGGTCAAAACCCAATATACAGAACAGTACCCTGAACATCTGAGGCATCTCTACGAGGCTGAGGCCGAGAAACTGAGGAATGAGGTTAAGACGAACAGAATCAACAGAACCAAAGCTAGGATGGCTGGCGGTGTTGGTCCAGTAGAGGAGGAAGCAGCTCCCATGGCTGTGAATGAAGCCCCCACGGACCTAGCTACAGCCATAGATCCTGCAGAGGACATCTCCTCTGACAAGACTGACTCTGCCCCACAGCCCACTCCAGGAGTTGCGGCCTCAAAGAATGACAGTCTACCCATGAGTAACCGGAGTAAAAAGAAAATGCTGAGGAAGACTTCCTATCAGAAAACAAAAGAGGAGTTTGAAAGTGTTAAAGAAAAGCAGAAGAATAAGAAAGAGGAGTTTTTGAAGAACAAGGAGCAGAAAGAAGAAGCTATCAAGAAGTACAAACAGAAGAAAATGGAGACATTTCAGATGCTGAGCAAAAAGACGAGAAGGGGCAGGCCCAACCTGAACCTACAGATGGAATACCTGCTCCAGAAGATTCAAGGGACCGGGCCGGAAAATGACCCAGAAAAATGGACGTCGAAGGTTTCAAATAGCAAATATACAGTTGGAACTCTTACTGTGATGGTTTTATATCATAGATGAGTCTTGTTCTTATTTTGTGAACTGCCACTTTGAATAGATTGTATCATATAGATTTTCAGACTTTTTAGCGGTTTATTTACATTTTGAACCACAAGGTGGCATTTGTGAGATGAGCTGTTCTtgtaaaatatttaaatattcCTTTCAA
>TU1961184
AAAGCACATGCGACGTAAACACATGAAACGTGCGATATTTTGCTAAAAATTTGTGAAATGGCACCACCAGCACAGCAGAAAATTAAGACCAAGGGCACATTTGACGGAAAACGTGCCAATAGAAACCAACCCTACAATCGACCAGGGGGCAGGAAGAAGTGGGTCTCTGAGCACAAAGTATTCGACGGCAGTATTGGAGAAGGCCAGGGCTTTGCCTTCAAAAGGAAGGAGAAAGTGAAACATGAATACAACAAACTGCTtcggaaggagaggaggaagaacacAGAGGTCAAAACCCAATATACAGAACAGTACCCTGAACATCTGAGGCATCTCTACGAGGCTGAGGCCGAGAAACTGAGGAATGAGGTTAAGACGAACAGAATCAACAGAACCAAAGCTAGGATGGCTGGCGGTGTTGGTCCAGTAGAGGAGGAAGCAGCTCCCATGGCTGTGAATGA
>TU1961190
GGAAAATGACCCAGAAAAATGGACGTCGAAGGTTTCAAATAGCAAATATACAGTTGGAACTCTTACTGTGATGGTTTTATATCATAGATGAGTCTTGTTCTTATTTTGTGAACTGCCACTTTGAATAGATTGTATCATATAGATTTTCAGACTTTTTAGCGGTTTATTTACATTTTGAACCACAAGGTGGCATTTGTGAGATGAGCTGTTCTtgtaaaatatttaaatattcCTTTCAAATAGCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576924.2 False 1115 mRNA 0.44 7 16740369 16742399
TU1961184 False 461 TUCP 0.47 2 16740403 16741218
TU1961190 True 247 lncRNA 0.33 1 16742161 16742407

Neighbor

gene id symbol gene type direction distance location
LOC110499844 LOC106609653 coding upstream 131728 16604259 ~ 16608641 (+)
LOC110499856 LOC106609654 coding upstream 139911 16594427 ~ 16600458 (+)
LOC110499847 LOC106609634 coding upstream 213963 16318043 ~ 16528816 (+)
LOC110499838 LOC106609638 coding upstream 441777 16291473 ~ 16298592 (+)
copg2 copg2 coding upstream 816578 15908444 ~ 15923791 (+)
LOC110499861 LOC106609625 coding downstream 396 16742795 ~ 16758777 (+)
LOC110501007 LOC106576552 coding downstream 19998 16762397 ~ 16825929 (+)
LOC110501009 LOC105020375 coding downstream 171614 16914013 ~ 16973778 (+)
LOC110516649 LOC106609628 coding downstream 260018 17002417 ~ 17063380 (+)
LOC110499865 LOC106576572 coding downstream 346570 17088969 ~ 17247292 (+)
G1711194 NA non-coding upstream 114318 16625845 ~ 16626051 (+)
G1711193 NA non-coding upstream 115876 16624175 ~ 16624493 (+)
G1711192 NA non-coding upstream 116330 16623640 ~ 16624039 (+)
G1711191 NA non-coding upstream 118608 16621461 ~ 16621761 (+)
G1711142 NA non-coding upstream 137987 16601732 ~ 16602382 (+)
G1711804 NA non-coding downstream 16420 16758819 ~ 16759573 (+)
G1711808 LOC106576486 non-coding downstream 19035 16761434 ~ 16763632 (+)
G1711809 NA non-coding downstream 24354 16766753 ~ 16768908 (+)
G1711836 NA non-coding downstream 98873 16841272 ~ 16841488 (+)
G1711837 NA non-coding downstream 99840 16842239 ~ 16842448 (+)
G1711795 NA other upstream 19817 16719920 ~ 16720552 (+)
G1710901 mest other upstream 803948 15931098 ~ 15936421 (+)
LOC110500994 LOC106609603 other upstream 1002892 15700619 ~ 15737550 (+)
LOC110499821 LOC106609608 other upstream 1249498 15462544 ~ 15700037 (+)
G1712658 NA other downstream 923881 17666280 ~ 17668586 (+)
si:dkey-159a18.1 LOC106609576 other downstream 1523296 18247128 ~ 18268691 (+)
G1713262 NA other downstream 1754748 18497147 ~ 18500874 (+)
G1713384 NA other downstream 1992392 18734791 ~ 18737436 (+)
LOC110499863 tap26 other upstream 943 16740369 ~ 16742407 (+)

Expression


Co-expression Network