LOC110501009 (LOC105020375)


Basic Information

Item Value
gene id LOC110501009
gene name LOC105020375
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16914013 ~ 16973778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957122.1
AGaaaaacagaagagagagaatagaggaagaCGGAACCATGTGCACAGGATTCTCTTCTATTTCACAGTACTTCAACGTTGCTCAGttcactccctcccccctctctctcatacacactccccctctctctcgctcagctgctctccctcccctcctgtggatggtgtagctctctctctctccctctctgtctggcgGAGCCGTGGACAGGATTGGAGGCTAGTAGTGAGTGactgcggagagagagagagactgaagagaagagaggagagcagagcagaagaCAGATCTATATTAGCAGTATCTCTGCTGGATACCTCTTCAATATTTCAATCAGAATTCTTCCTCAACCAGCTCGAGCCTCACACTTCCCACCGGACCCCCATCACCCTACCCTTACCAGGGGGACATATGAACAGCACAGAGGGTTTACCACCCCGGACCTCCACACAGGGAGCCATGTGATACCCCCTTGCGCTGCTGAAATTCCCCCAAATCGGTGCTCTGAATCGGGATTGAAACCAAGGATTGTATCCCCCCTGCTTGAAACCCCCTCCTGGGTTTGTGGATCTTCTCTAGCTgcaagaggaggaagggaagggagggactGCTAGGTCTCTGCATACCCGGCTGGGAGACACTCTTCTCTGGGCAAGTGTGGGGTGTGTGCCCCCCTTGGGCTGGAGGCCAGCGCTCCAGCACCATGGATTACCTACCTGGGATTgtactgttgctgctgttctGCGGGGCGGTGGTGCCGGGGCAGGGGGAGCCCAAGCACAGCGTCCCCAGGTTAAAGCTCTCCTACAGGGagatggTAGAATCCAGTAACCTCATCACTTTCACCGGCCTCACCAACAGCTCCGGCTACGACACCTTCCTATTggacgaggagagaggaagacTGTTGGTGGGTGCCGAGGACCACGTCTTCTCCTTCGACTTGGTCAATCTCAACAGAGAGCACAAACAGaTCGCATGGCCAGCCACACCCTCAAAGCGTGACGAGTGCAAGTGGGCGGGGAAAGACCTCGGGAAAGAGTGTTCCAACTTCATCCGAGTGCTCCAACCCTACAACTCCACCCACCTGTATATCTGTGGTACAGGGGCCTTCCATCCCATCTGTGCCTACCTGGAGATGGGCAAACGGGCAGAGGACAACATCTTTCGACTGGAGTCGTCCCACTTCGAGAACGGCCGGGGGAAAAGCCCCTACGACCCCAAGATGCTCTCTGCGTCCATCATGTTAGATGGGGAGCTGTACTCTGGCACATCGGCAGACTTCATGGGAAGGGACTTTGCCATCTTCCGCACCCTCGGGGAGCATCATCCTATCAGGACTGAGCAACATGACTCTAGATGGCTCAATGaccccAGGTTTGTAGGTGTAAACCTGATCCCAGAGAGTGACAACCCTGAGGATGATAAGATCTTCCTCTTCTTCAAAGAGAACGCTATGGACGGAGAACACACTGGCAAGGCCACTATTGCCCGCATAGGACAACTGTGTAagAATGACCTGGGAGGTCACAGGAGTCTGGTCAATAAGTGGACCACCTTCCTCAAGGCCAGACTGACCTGCTCAGTGCCAGGCCTCAACGGCATCGACACACACTTCGACGAGCTGCAGGATGTCTTTCTGATGAGCTCCAAAGATCCTAAGAACCCAGTGATCTATGCTGTCTTCACCACTTCTAGTAACATATTCAAAGGCTCAGCAGTGTGTATGTACAACATGGCAGACATCCGGAGGGTCTTCCTGGGTCCCTATGCCCACCGAGATGGGCCCACCTACCAGTGGGTACCCTTCCAGGGGAGGGTGCCCTACCCCCGCCCTGGCACGTGCCCCAGTAAAACGTTTGGGGGCTTTGACTCCACCAAGGACCTCCCTGATGATGTGATCACCTTTGCGCGGGGCCACCCGGCCATGTTTAACCCCGTGCACCCCATCGGGGGTCGTCCCATCGTGGTGAGGACTGATGTGGACTACCAGTTCTCCCAGCTAGTGGTGGACAAGGTGGAGGCCGAGGACGGACAGTACGACGTCATGTTCATTGGAACAGACCTGGGCACGGTCCTGAAGGTGGTTACCATCCCAAGAGAGAGCTGGCATGACCTGGAAGAGGTGGTCCTGGAGGAGATGACCGTGTTCAGGGAGCCCACCCCCATCACAGCAATGGAGCTTTCCACCAAACAGCAACAGCTGTACCTGGGCTCGGCGCTAGGCGTTTCCCAGATGCCTTTGCACCGCTGTGAGGTGTACGGGAAGGCTTGCGCTGAGTGCTGTCTGGCCCGTGACCCCTACTGTGCCTGGGATGGAACAGAGTGCTCCCGTTACTTCCCTACCGCCAAgcgGAGAACGAGACGCCAGGACATCAGGAATGGAGATCCCCTCTCCCAGTGCTCCGACCTGCAGCATCATGATGACGTGGACGGGCTGGGTCATGTGGAGGACAGGAGTGTGTACGGAGTGGAGAACAGCAGCATGTTCCTGGAGTGTAGTCCCAAGTCCCAGAGAGCCCTCATCTACTGGCAGCTCCAAAGACCCAACGAGGACCGCAAACATGAGatcaAGTCCGAGGACAGGATGATCCGCACGGAGCAGGGCCTGCTCATCCGCATCCTCACCCAGGCCGACTCAGGCGTCTACACCTGCCACGCTGTGGAGCACGGCTTCATCCAGCCCCTCCTCCGCCTCTCCCTCCAGGTCATCCCCACACAGAGGCTGGGTGAGCTGCTGCCTGGTGGGCCTCAGGGTGGAGCTGGAGGGTCTGGTGGCGCAGGTAGTGGGTCTGGTGGTGCAGGTGGGCCTGCTGGTGCAGGGCACTCAACAAAACACAAGCTGTGGTACAGGgatttcctctccctcctcgaCCACCCTGACCTGAACAGCGTGGAGGAGTTCTGCGAGCGTGTGTGGCGGAAGGAGCGCAAGCAGCGGCGTCTGAAAacccccaccatcaccaccaatgACCAAAGTCTGGCTAGGCCTGACGGCGGAGCTCCAAGCTCAGGCCTAAAGCCTAAAAGTAGTCCTCTTGGCGCAGGTGCACCCAATGCCCAGAAGCAGCAGAGCGGGCATCCTACggtgcagcagcagcagaacaAAGAAGGGAGCCCCCGGAGCACGAACCCCCAGAAGGTGCAACACCATGCGGGTACGCTAACCCAGGCACAGGCCCCTAAAAACAACAACCAGAATGCCCAGAACTCTCAGGCCACACCCAACACCCAGAGCCCCCAGAAGGGCCAAGGCGCCCTGGGGGGAACCCAGGTGCCTGGTGGTGGGGCCAGAGGTGGACCCCAGCACACGGCCAAGTGGAGGCGAATGCAGGAGAATAAGAAGGGGCGAAACAGGAGAACCCATGAGCAACAGAGACCCCCGCGGAgtgtctgagacacacacacagcaacacacacacttacacacatatTGTACATTAAAACATAGACTTGCTATCCCATAAAGATATAATGTAGGATCCCACATAATGCAATACTCATGGTCATATGCTCATTCACACATAATATGTAGACAGAAATATACCATCCAAATGGAATGCTCTAAAACATAcacccaaagcacacacacacacacacagtagccatGGCTACTAGGTCATAGGGTTACAGacctgggtacacacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacactgcaaatacCCTGTGAAGACTTGGAGAAGACTGGCGACTAACAGGACATTGAAGACTGAGGCTAAACTGGAATCGTATGCGTACTGTACATGCTAACCATGTGGATATAGTGGCTCAGGGGGTACAATTTGAGGAACTGTGTAGTCCAGGTCCGTGTTGCAAGTGGGACAGAGTTATCTGGCGGACACATGGCCCTTCTGTACAGACGCTACTTCCGTATGGGACTGGGATGGGGTTAAAAAACATTCATTTTCAGTGAGGATGATACATATTCAGACCTCTGGACAAGTTTGGACAATGACCTCTACAGGACATTTCAGAAGACATTTCAGAAGGGGTTAAGACATTTAAGTTCAGTAGGGACGTCCATTACTGCAGCTACTGGCCTTGTTGACATGCGCAGAAGGAAGAGGAtgtccactatatagagaatggaAGAACTATGAGGATAAGAATCATTTGTCCAGTCGATTGCAAACTAGAACCGAAATACATCAAAAGAAGCACAGTCATTTTCAGAGAGTGAACTGCATTTCCCACAATACAGTTTGTCGGCTCAACTTTATTCAACTGATTCGATTCACAATGACTCTCATGAATGAGCACTTTGGGCTTGTACATAGAGCTTGACTGTCTTATAGGTCAAACAGATTAAATGGGGCACAGTTAGCTGATTAACAATCCACAACGGTGCCCTGCATATTGTTTATAGTTCAATAACAGAATTATTCAATATAAAACGACAAAATCCACATTAGCCTGTGATCTGTGCAGCAAAATCAAGCTTCTCTTCCTCCCAAGGCTTGAAAAGCATTGTGCATGTCGTAGTCAGTCAATATTCATGATTTGAATAAGCTATTTCTCGCCAGTTACTCGCTATGTAAGGTTTTTTTATGTTAAAAGGAGTCCTATGAAAGAAAAATctattttctgtttttatttgatatttacttctctctctccctacaaaCCACTGCATCCCTGTAGGGGTAAACAATTATGTAGTAGAATTTTTTGACCTGCCCCTTTAAGTTATTTTTCTTTCTTTGCTTTCTCCTGGAGTTGCGTGTGAATTTATAATTCCAGTCATATGTTCGTGCTCAGTCTGGAAAACAGACTGCCTATTGATTCTGTACATATACATACAACAACAAAATGACTCTTTatgtatgtaaatatatacaaCCAGAACACCACTGATTATTTATTTCTCATTGTTTTGTGAAAGGGTTGCATTTATTTTTGATATTCTGGTATTTTGGCTCATCAATAATCAAGAAAAAAAACTGTGGCACGTTGAGAAACACAAACGGACCAATGAGGACGGACTTCCTCTGTCAAGGACTCCGTTTTTTTCCGGGGGGGGGCGTGTTTCGGAAGTGAACCACGGGATGAAGGTGGGAGCAGGGGGTTGTTGTGTGTTTTACAGTATCCAGACTGAGAGCCTTCAGGATGATAAGCACAAGTTTCTCAAACCCTCTTCTACGTTTCTGTCTCTTCTGGTCTTTTCCTAAATGGCTCATTTTTCTACCCAGGAGGTGTTTTCGTTGGAGTTTGGAATCCCATCCACCTATCTCATTCGTTCATCCCAAATACTCATTTTATGTAAGATAATACTACCCAAAACCTGATAAACATTAGCTGTGAATTCCTATGTAAGAATTAGTAAGGAAAAGGTTCCAATCTAAACCTAGTCTGAGGACGCTGAGTTAAAGCTGCATGTGAATGCTACTTAAGTGCATCTTTTCTATTGTCTCTAGATGTTTCCTGTGAGAGGTAAAGGTCCCGTGGGCAACATGTGCAAGAGAGATGTGAATATTCTTCCTTTTTGCCAAAACAAAGATGCCAACATgtaccaggggtgtattcattaggaaccaaacagaagcaaacagGCCTAAACGGGGAGGGActaacctgaacttgtccaataacaaaCGCACATTTTTGTCGCAAATCGTTTTCTGTAGCTAAACGTTTTGCTATGGTGTctgctaatgaatacaccccagtgaTGTTACTCCAACCCCAAAACTTGTATTAAGACCTTCAACTTTTCATACAACTATGTGTTTCCCCCTCAGTAAACAACAAGACTGATGTGTCATTGCAATAATGGACAGCAGATAGCAAGGTTTCCTGGTGGTTTGTGGTATGTTTCTGGTCTCTCACGGTGTGTAGGGTGGACGAGGAGAGAACAGATACCTCTGCTGTAACATGGTTCTTCCTGGCATGCGTTCAGTTGTCTAATTAAACATTTCCTGTAAAACCta
>TU1961238
ACAGGATTGGAGGCTAGTAGTGAGTGactgcggagagagagagagactgaagagaagagaggagagcagagcagaagaCAGATCTATATTAGCAGTATCTCTGCTGGATACCTCTTCAATATTTCAATCAGAATTCTTCCTCAACCAGCTCGAGCCTCACACTTCCCACCGGACCCCCATCACCCTACCCTTACCAGGGGGACATATGAACAGCACAGAGGGTTTACCACCCCGGACCTCCACACAGGGAGCCATGTGATACCCCCTTGCGCTGCTGAAATTCCCCCAAATCGGTGCTCTGAATCGGGATTGAAACCAAGGATTGTATCCCCCCTGCTTGAAACCCCCTCCTGGGTTTGTGGATCTTCTCTAGCTgcaagaggaggaagggaagggagggactGCTAGGTCTCTGCATACCCGGCTGGGAGACACTCTTCTCTGGGCAAGTGTGGGGTGTGTGCCCCCCTTGGGCTGGAGGCCAGCGCTCCAGCACCATGGATTACCTACCTGGGATTgtactgttgctgctgttctGCGGGGCGGTGGTGCCGGGGCAGGGGGAGCCCAAGCACAGCGTCCCCAGGTTAAAGCTCTCCTACAGGGagatggTAGAATCCAGTAACCTCATCACTTTCACCGGCCTCACCAACAGCTCCGGCTACGACACCTTCCTATTggacgaggagagaggaagacTGTTGGTGGGTGCCGAGGACCACGTCTTCTCCTTCGACTTGGTCAATCTCAACAGAGAGCACAAACAGaTCGCATGGCCAGCCACACCCTCAAAGCGTGACGAGTGCAAGTGGGCGGG
>TU1961236
TTGAGGAACTGTGTAGTCCAGGTCCGTGTTGCAAGTGGGACAGAGTTATCTGGCGGACACATGGCCCTTCTGTACAGACGCTACTTCCGTATGGGACTGGGATGGGGTTAAAAAACATTCATTTTCAGTGAGGATGATACATATTCAGACCTCTGGACAAGTTTGGACAATGACCTCTACAGGACATTTCAGAAGACATTTCAGAAGGGGTTAAGACATTTAAGTTCAGTAGGGACGTCCATTACTGCAGCTACTGGCCTTGTTGACATGCGCAGAAGGAAGAGGAtgtccactatatagagaatggaAGAACTATGAGGATAAGAATCATTTGTCCAGTCGATTGCAAACTAGAACCGAAATACATCAAAAGAAGCACAGTCATTTTCAGAGAGTGAACTGCATTTCCCACAATACAGTTTGTCGGCTCAACTTTATTCAACTGATTCGATTCACAATGACTCTCATGAATGAGCACTTTGGGCTTGTACATAGAGCTTGACTGTCTTATAGGTCAAACAGATTAAATGGGGCACAGTTAGCTGATTAACAATCCACAACGGTGCCCTGCATATTGTTTATAGTTCAATAACAGAATTATTCAATATAAAACGACAAAATCCACATTAGCCTGTGATCTGTGCAGCAAAATCAAGCTTCTCTTCCTCCCAAGGCTTGAAAAGCATTGTGCATGTCGTAGTCAGTCAATATTCATGATTTGAATAAGCTATTTCTCGCCAGTTACTCGCTATGTAAGGTTTTTTTATGTTAAAAGGAGTCCTATGAAAGAAAAATctattttctgtttttatttgatatttacttctctctctccctacaaaCCACTGCATCCCTGTAGGGGTAAACAATTATGTAGTAGAATTTTTTGACCTGCCCCTTTAAGTTATTTTTCTTTCTTTGCTTTCTCCTGGAGTTGCGTGTGAATTTATAATTCCAGTCATATGTTCGTGCTCAGTCTGGAAAACAGACTGCCTATTGATTCTGTACATATACATACAACAACAAAATGACTCTTTatgtatgtaaatatatacaaCCAGAACACCACTGATTATTTATTTCTCATTGTTTTGTGAAAGGGTTGCATTTATTTTTGATATTCTGGTATTTTGGCTCATCAATAATCAAGAAAAAAAACTGTGGCACGTTGAGAAACACAAACGGACCAATGAGGACGGACTTCCTCTGTCAAGGACTCCGTTTTTTTCCGGGGGGGGGCGTGTTTCGGAAGTGAACCACGGGATGAAGGTGGGAGCAGGGGGTTGTTGTGTGTTTTACAGTATCCAGACTGAGAGCCTTCAGGATGATAAGCACAAGTTTCTCAAACCCTCTTCTACGTTTCTGTCTCTTCTGGTCTTTTCCTAAATGGCTCATTTTTCTACCCAGGAGGTGTTTTCGTTGGAGTTTGGAATCCCATCCACCTATCTCATTCGTTCATCCCAAATACTCATTTTATGTAAGATAATACTACCCAAAACCTGATAAACATTAGCTGTGAATTCCTATGTAAGAATTAGTAAGGAAAAGGTTCCAATCTAAACCTAGTCTGAGGACGCTGAGTTAAAGCTGCATGTGAATGCTACTTAAGTGCATCTTTTCTATTGTCTCTAGATGTTTCCTGTGAGAGGTAAAGGTCCCGTGGGCAACATGTGCAAGAGAGATGTGAATATTCTTCCTTTTTGCCAAAACAAAGATGCCAACATgtaccaggggtgtattcattaggaaccaaacagaagcaaacagGCCTAAACGGGGAGGGActaacctgaacttgtccaataacaaaCGCACATTTTTGTCGCAAATCGTTTTCTGTAGCTAAACGTTTTGCTATGGTGTctgctaatgaatacaccccagtgaTGTTACTCCAACCCCAAAACTTGTATTAAGACCTTCAACTTTTCATACAACTATGTGTTTCCCCCTCAGTAAACAACAAGACTGATGTGTCATTGCAATAATGGACAGCAGATAGCAAGGTTTCCTGGTGGTTTGTGGTATGTTTCTGGTCTCTCACGGTGTGTAGGGTGGACGAGGAGAGAACAGATACCTCTGCTGTAACATGGTTCTTCCTGGCATGCGTTCAGTTGTCTAATTAAACATTTCCTGTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957122.1 False 5989 mRNA 0.50 16 16914013 16973778
TU1961238 False 817 TUCP 0.56 3 16914220 16943789
TU1961236 True 2142 lncRNA 0.40 1 16971634 16973775

Neighbor

gene id symbol gene type direction distance location
LOC110501007 LOC106576552 coding upstream 88084 16762397 ~ 16825929 (+)
LOC110499861 LOC106609625 coding upstream 155236 16742795 ~ 16758777 (+)
LOC110499863 tap26 coding upstream 171614 16740369 ~ 16742407 (+)
LOC110499844 LOC106609653 coding upstream 305372 16604259 ~ 16608641 (+)
LOC110499856 LOC106609654 coding upstream 313555 16594427 ~ 16600458 (+)
LOC110516649 LOC106609628 coding downstream 28639 17002417 ~ 17063380 (+)
LOC110499865 LOC106576572 coding downstream 115191 17088969 ~ 17247292 (+)
LOC110501011 LOC105020379 coding downstream 298227 17272005 ~ 17319991 (+)
LOC110499879 snd1 coding downstream 370653 17344431 ~ 17655507 (+)
LOC110499878 LOC106576496 coding downstream 1170755 18144533 ~ 18203141 (+)
G1711858 NA non-coding upstream 37309 16876194 ~ 16876704 (+)
G1711851 NA non-coding upstream 47491 16866241 ~ 16866522 (+)
G1711839 NA non-coding upstream 64545 16844218 ~ 16849468 (+)
G1711837 NA non-coding upstream 71565 16842239 ~ 16842448 (+)
G1711836 NA non-coding upstream 72525 16841272 ~ 16841488 (+)
G1711908 NA non-coding downstream 6390 16980168 ~ 16982189 (+)
G1711909 NA non-coding downstream 11398 16985176 ~ 16985412 (+)
G1711911 NA non-coding downstream 20152 16993930 ~ 16994129 (+)
G1711912 NA non-coding downstream 20948 16994726 ~ 16996423 (+)
G1711845 NA non-coding downstream 25831 16999609 ~ 16999854 (+)
G1711795 NA other upstream 193461 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 385197 16318043 ~ 16528816 (+)
G1710901 mest other upstream 977592 15931098 ~ 15936421 (+)
LOC110500994 LOC106609603 other upstream 1176536 15700619 ~ 15737550 (+)
G1712658 NA other downstream 692502 17666280 ~ 17668586 (+)
si:dkey-159a18.1 LOC106609576 other downstream 1291917 18247128 ~ 18268691 (+)
G1713262 NA other downstream 1523369 18497147 ~ 18500874 (+)
G1713384 NA other downstream 1761013 18734791 ~ 18737436 (+)
G1714090 NA other downstream 2411194 19384972 ~ 19754609 (+)
G1711904 NA non-coding upstream 15940 16955457 ~ 16955694 (+)
G1711902 NA non-coding upstream 21757 16949629 ~ 16949877 (+)
G1711898 NA non-coding upstream 26007 16945360 ~ 16945627 (+)
LOC110501009 LOC105020375 other upstream 27845 16914013 ~ 16973778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G227278 LOC104928793 unknown NC_053134.1 CM020931.1 11689169 ~ 11757317 (+)