LOC110499869


Basic Information

Item Value
gene id LOC110499869
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17181446 ~ 17187956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576928.2
TTCAACATCACTTTGCTGAAGTGGATTGGGAGGAGCATTACAATGTCACTTTCCTGAAATGAAACTTAAGTATACAGTGTATTGAGTACGGAATAAACTCTCCCCAGCTCTTCAGAAATATCTATTAAATACACAGTCTACTATCTCACAGAAAATACAAAGATATTACCCACAAACGCATGCAGATATGGTCACCTCCAGTAGTCTCCTGTATGAAGAGCAATTCCTGTGCTCTATCTGTCTGGATGTACTGTAGTCACCGAGGAAGGCTGAAGAACTCATTAAAGAGCTGGAGCAGGAAACCACTGAGCTAAAGATAAGAAGcactgagctggagcagctctcacacacTGAGGATGATCTAAACCTCCTCCAGAGCTTCCCATCCCTGTGCAGCCCTCCACTCACCAAGGACAGTGATCTGTATGTGGGGATTGTGAGCAGAGCCGTGTGTCAGCTAGAAGAGACAGTCATGAGTGAGATGAAGAGGTTGTTTGATGATGAGCTGAAGAGGATTCAGCAGTATGCAGTGGATGTTATTCTGGACCCTGATACAGCAAGCCCCTGGCTCATTCTGTCTAAGAATGGGAAAGAAGTGAGaactggagaaaaaaaacagaagcTCCCTGATAACCCAAAGAGGTTTGATTCTGCCGTTAATGTCTTGGGAAAGAAAGGCTTCTCCTCAGGGAGATTCTACTATGAGGTAACTGTTACAGGGAAGACTGAGTGGAATTTAGGAGTGGCCAGAGAGTCTATCAACAGAAAGGGGACTGTCGCATTAAGCCCTGATAATGGACGCTGGGCAGTGATCCTGAGGGATGGGAGTAAGTACATAGCTTGTGCCCCGACCCGTGTCCACCTCTGCATGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCATTTTAtgatgtggaggccaggtctcaTATCTACTCTTTCACTGGCTACACCTTCACTGAGAAACTATATCCATACTTCAGCCCTTTGCTCAATGATGGTGGTAAAAACTCTACTCCTCTAATCATCTCTCCTGTCAATCACACAGACTGAGTTTGAACCTGAAATTGACCTGAAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAAGTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACATGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACATGGAGAATATTTCACTGTAGTTTATTAACTGAACTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTAAATTGAAAATGCACATTTTGAAAGGTCACGCCCCTCACCCAGTTTGTCCAATAGTCATGAAATTCAGGACATCAGTCCTCCTCTTCAGAAGGAACAAATTTTCAGCAGGGATCCATAAGGTCCACCACGATGGATATTCCACCATTTAGAATTTGGTGAAAAACACTTCAAACGCTTCTCCTCTGGCACTGAATGACCGATCAGCAAGAAACTTGATATGCGGCATGTATGGACAAACGTCTCTCAACGCAATATATTCCAGACTAGTACCTAAAACAACATGGCCGTAATGGCCAATAAACTTTCATGTGGTCCGAAACACAAATCAGTCACAGATATTTCTATTGTAACAAATTTGGTACACATGTTGAAAACACTGTCAACAAGACCCAACATATGCAAGAACATTCATATCGACCACAAGGTGGCACTATAACTGGCACATGTTTTGATAATATCAGCATAGTCTCGTTTGAATTTGCCGGGGGAAGGGGGGGGTATCA
>XM_036957133.1
atactctACAAACAATGGAGAACTGTCATCTGAGAGTTCAGCAATGTAATGGGTTAACTTCCATGAGGAACAGTGGATGGGGAAGAAATGTGGATGGGGAGGAGCATTGCACTGCCACTAAGCTGAAATGAAACTGAAGTACACAGTGTATTGTGTACAGTACCAAACTTTCTCCAGCTCTTCAGATATATCTATATCTTTCTCACAGAAAGGACAGAGATATTATCCATAAACAAGCAGGTGAGTAGAGAGATTAACATGGACAGACAAATTGAAAGATATGGTCACCTCCAGTAGTCTCCTGTATGAAGAGCAATTCCTGTGCTCTATCTGTCTGGATGTACTGTAGTCACCGAGGAAGGCTGAAGAACTCATTAAAGAGCTGGAGCAGGAAACCACTGAGCTAAAGATAAGAAGcactgagctggagcagctctcacacacTGAGGATGATCTAAACCTCCTCCAGAGCTTCCCATCCCTGTGCAGCCCTCCACTCACCAAGGACAGTGATCTGTATGTGGGGATTGTGAGCAGAGCCGTGTGTCAGCTAGAAGAGACAGTCATGAGTGAGATGAAGAGGTTGTTTGATGATGAGCTGAAGAGGATTCAGCAGTATGCAGTGGATGTTATTCTGGACCCTGATACAGCAAGCCCCTGGCTCATTCTGTCTAAGAATGGGAAAGAAGTGAGaactggagaaaaaaaacagaagcTCCCTGATAACCCAAAGAGGTTTGATTCTGCCGTTAATGTCTTGGGAAAGAAAGGCTTCTCCTCAGGGAGATTCTACTATGAGGTAACTGTTACAGGGAAGACTGAGTGGAATTTAGGAGTGGCCAGAGAGTCTATCAACAGAAAGGGGACTGTCGCATTAAGCCCTGATAATGGACGCTGGGCAGTGATCCTGAGGGATGGGAGTAAGTACATAGCTTGTGCCCCGACCCGTGTCCACCTCTGCATGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCATTTTAtgatgtggaggccaggtctcaTATCTACTCTTTCACTGGCTACACCTTCACTGAGAAACTATATCCATACTTCAGCCCTTTGCTCAATGATGGTGGTAAAAACTCTACTCCTCTAATCATCTCTCCTGTCAATCACACAGACTGAGTTTGAACCTGAAATTGACCTGAAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAAGTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACATGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACCAGGGAGAATATTTCACTGTAGTTTATTAACTGACCTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACATGGAGAATATTTCACTGTAGTTTATTAACTGAACTGTAAAATTAGTACCTCAATTAGAGTTCAGTCTTTCATAAAACACAGGGAGAATATTTAAATTGAAAATGCACATTTTGAAAGGTCACGCCCCTCACCCAGTTTGTCCAATAGTCATGAAATTCAGGACATCAGTCCTCCTCTTCAGAAGGAACAAATTTTCAGCAGGGATCCATAAGGTCCACCACGATGGATATTCCACCATTTAGAATTTGGTGAAAAACACTTCAAACGCTTCTCCTCTGGCACTGAATGACCGATCAGCAAGAAACTTGATATGCGGCATGTATGGACAAACGTCTCTCAACGCAATATATTCCAGACTAGTACCTAAAACAACATGGCCGTAATGGCCAATAAACTTTCATGTGGTCCGAAACACAAATCAGTCACAGATATTTCTATTGTAACAAATTTGGTACACATGTTGAAAACACTGTCAACAAGACCCAACATATGCAAGAACATTCATATCGACCACAAGGTGGCACTATAACTGGCACATGTTTTGATAATATCAGCATAGTCTCGTTTGAATTTGCCGGGGGAAGGGGGGGGTATCA

Function

NR:

description
pyrin-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576928.2 False 2555 mRNA 0.40 2 17181446 17184258
XM_036957133.1 True 2648 mRNA 0.40 2 17181446 17187956

Neighbor

gene id symbol gene type direction distance location
LOC118942893 LOC105020372 coding downstream 404269 16758800 ~ 16777177 (-)
LOC110501003 LOC106576525 coding downstream 441143 16719898 ~ 16740303 (-)
LOC110499846 LOC106576554 coding downstream 480879 16613901 ~ 16700567 (-)
LOC110499843 LOC105020363 coding downstream 588234 16573934 ~ 16593212 (-)
LOC110514342 LOC106609637 coding downstream 635268 16530059 ~ 16546178 (-)
LOC110518924 LOC106576509 coding upstream 134691 17322647 ~ 17325861 (-)
LOC110499875 LOC106576481 coding upstream 288179 17476135 ~ 17481386 (-)
LOC110499880 LOC106576467 coding upstream 942143 18130099 ~ 18134351 (-)
LOC110499883 LOC106576497 coding upstream 1015583 18203539 ~ 18232189 (-)
LOC110499895 LOC106609039 coding upstream 1466079 18654035 ~ 18657692 (-)
G1712353 NA non-coding downstream 82 17141574 ~ 17181364 (-)
G1712363 NA non-coding downstream 20692 17157178 ~ 17160754 (-)
G1712352 NA non-coding downstream 40526 17140511 ~ 17140920 (-)
G1712021 NA non-coding downstream 115583 17063524 ~ 17065863 (-)
G1712023 NA non-coding downstream 117999 17061690 ~ 17063447 (-)
G1712399 NA non-coding upstream 32691 17220647 ~ 17221762 (-)
G1712402 NA non-coding upstream 38573 17226529 ~ 17226866 (-)
G1712403 NA non-coding upstream 39904 17227860 ~ 17228719 (-)
G1712404 NA non-coding upstream 42927 17230883 ~ 17231264 (-)
G1712406 NA non-coding upstream 45361 17233317 ~ 17233731 (-)
G1712050 NA other downstream 177746 17002614 ~ 17003700 (-)
G1711947 LOC106609625 other downstream 435582 16742840 ~ 16745864 (-)
G1712424 NA other upstream 107563 17295519 ~ 17295735 (-)
G1713604 NA other upstream 1282557 18470513 ~ 18470817 (-)
G1713637 NA other upstream 1406648 18519287 ~ 18605517 (-)
G1713719 NA other upstream 1480878 18668834 ~ 18669325 (-)
G1713755 NA other upstream 1577504 18765460 ~ 18766379 (-)

Expression


Co-expression Network