LOC110518924 (LOC106576509)


Basic Information

Item Value
gene id LOC110518924
gene name LOC106576509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17322647 ~ 17325861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958474.1
GCAGTCAgtagtgaaggagagggaggagatggagacagttGAGGTGAACGAGCTCCAGCCTCCCCGGCCCCAGCATCGCAACCGCACCACCTTCACCCTGGGGCAGTGCAGAGTGTTAGAGCAAGAATTCACACAGAGCCACTATGCAGACATGTTCACCAGGGAAAAACTGGCATCTGAGATCCAACTTCCAGAGGACACCATCAAGGTGTGGTTCTCAAACAGAAGAGCAAAATGGAGGAGGGAAGCCAAGTATAAGAGCGGTGTCCACGGAGCacataCTTCATTTCTGATGAACCAAAAGAACAAAGATTTCCCTTCAGTGAACTCCATGACAACAACCAACTCAATGACTCAACAGACTCACTGGGGTCAGAGGGAGAGTTTGGGAGTACAGTTTGACACTTCATGCTCAGAAATCTCCCAGAGATATGGTCCAGCTACTACAATAGAGAGAGgaataggaggaacagaaGTGTTGGGCTATAGAGGCATCTCCATTCCGCTTCCATCCTCAGCATCTCAATACTCAGGCAGCACCACGTTCCCATTGGTCCATCCCCAGGACGAGAGGACTCCATCGGCTCACCATGCAGAGAGATTCATTTTCCCATTGGCTCATCATTACACAGACGTGAGGACAGTCTTCTCATTGGCTCATCAGACTGAGAGGATGGGACATTCACTGAACTATCATTGGGATGATGGGTCAGATTTCCAATTTTCTCATCACCAAACAGATGAAAGGATTCTATTGGCTCATCACAGGGAGAGGACTGGTGGTCCATCGCTTATATGACAGAatgtctctccccttttctcgcatcagtgaatgtcagagccaaacattctcacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctctatggCTATGCTGATTACTACTGGGCAGGGTATGCAATAGAGTGGGTACAGAGACATTCCAATCGTGACCTAATGTGTTTAAAATGAAATTTCTACAGGCTATTGCAACATATCTCAGTGAAA

Function

NR:

description
PREDICTED: paired box protein Pax-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958474.1 True 1115 mRNA 0.48 6 17322647 17325861

Neighbor

gene id symbol gene type direction distance location
LOC110499869 NA coding downstream 134691 17181446 ~ 17187956 (-)
LOC118942893 LOC105020372 coding downstream 545470 16758800 ~ 16777177 (-)
LOC110501003 LOC106576525 coding downstream 582344 16719898 ~ 16740303 (-)
LOC110499846 LOC106576554 coding downstream 622080 16613901 ~ 16700567 (-)
LOC110499843 LOC105020363 coding downstream 729435 16573934 ~ 16593212 (-)
LOC110499875 LOC106576481 coding upstream 150274 17476135 ~ 17481386 (-)
LOC110499880 LOC106576467 coding upstream 804238 18130099 ~ 18134351 (-)
LOC110499883 LOC106576497 coding upstream 877678 18203539 ~ 18232189 (-)
LOC110499895 LOC106609039 coding upstream 1328174 18654035 ~ 18657692 (-)
LOC110499898 scyl2 coding upstream 1357530 18683391 ~ 18701775 (-)
G1712428 NA non-coding downstream 19163 17301904 ~ 17303484 (-)
G1712427 NA non-coding downstream 21527 17300732 ~ 17301120 (-)
G1712426 NA non-coding downstream 22216 17300217 ~ 17300431 (-)
G1712419 LOC106576483 non-coding downstream 45354 17274907 ~ 17277293 (-)
G1712410 NA non-coding downstream 75260 17243303 ~ 17247387 (-)
G1712469 NA non-coding upstream 44003 17369864 ~ 17370931 (-)
G1712474 NA non-coding upstream 49027 17374888 ~ 17377826 (-)
G1712520 NA non-coding upstream 125614 17451475 ~ 17452034 (-)
G1712450 snd1 non-coding upstream 299558 17625419 ~ 17655496 (-)
G1712671 NA non-coding upstream 338497 17664358 ~ 17675199 (-)
G1712424 NA other downstream 26912 17295519 ~ 17295735 (-)
G1712050 NA other downstream 318947 17002614 ~ 17003700 (-)
G1711947 LOC106609625 other downstream 576783 16742840 ~ 16745864 (-)
G1713604 NA other upstream 1144652 18470513 ~ 18470817 (-)
G1713637 NA other upstream 1268743 18519287 ~ 18605517 (-)
G1713719 NA other upstream 1342973 18668834 ~ 18669325 (-)
G1713755 NA other upstream 1439599 18765460 ~ 18766379 (-)
G1714475 NA other upstream 2125339 19400335 ~ 19453678 (-)

Expression


Co-expression Network