LOC110499875 (LOC106576481)


Basic Information

Item Value
gene id LOC110499875
gene name LOC106576481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17476135 ~ 17481386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576933.2
acagggtagaatatatgagagagagagagagagagagagagagagaagagaaggagaaagaaagagggggagagtggaTTAGTTAATGCACAAAAACACTGCATCAAACCAATGCACTGCTCCGAGCAGGATGCGTCAGCAGTACATTCACGTTCCCCACTCAAGGACAAAAGAGAAAGAGCAACAGAGTGAACAAgcgaatgaaagagagagagtgagagcagccTTGCACCACACTGGCACCAGAAAAACGTGCCGGAATAACCTGAGCAGCAGGATTAACACCGGGGCTGCAGGGGTTAAAATCGTGTTGCCGTGGGGACACGCTGCCGTTTTCTCCAGTTCACCTGGGAAGCGCTTTATTCTCCTCTAAAccagggagccagagagagaaacaagagagagagaaagagaggacagtgGAAGCTAACACGGTTGAAAGGCTTCGCGCTGGCACACACAAAGGACTGAGTGCTTTGAGCTTGGCCACTACCTCAGGACACTGCGGGGGCTGAGAAGaacgggagagggggagagagagagaaagagatacacaTCCCCGCTCTCGCTCATCTGCTGCTACAGCGGATCTGTTTTCCTCATCGATGCTGCTATAACATTCACGCCTGTGCCCCGCTCGGCTCTCTCTTGCTTCACTCTCCTATTCTGCCGCGCGGTGAAGAAAAAAAGGGATTGAAAACAGGAGCGAGAAAGAGACCGAGGGAGATGGCGCTTTAGCCTCTTTTTGCTGTGCTGATATTGCTGCTGAATCTACTCTacgcccccctccctctctcaactcTGTTACAAACCCCCACCCACCCTCGGAAGAAATTGACGGATTATTGGGAAGTGCGCGGGAGGCAGGCtgcagctgctgtgtgtgtgtgtgtgtgtgtgtgagcgccgCTGCTGGCGAGCCGTGTTTGCGTGCTGCTGTGCTGGAGCGCAGAGCTAGTTAAGAGGAGAAATAAGCTAATGACCGCAGTGTGTGTCGCGTAGCCTTTTCAACCCTGCAGAGCGCTACAGAAATCAAGTGGACACGACTCGAcacacaaagagaaagagagagagagagagagagagagagagagagagagagagagggtagactgactgactgaccaccaAAAAATAGAAAGAGccaagggaaaggaaagggggggtcctgtccccccccccttcaaACAAAAGGGGAAGAAATTTGAAAGGACTGTGgaatttttcttcttcttcctccttaacccccccctccctctaccctgaaACCCCCACCCATTTTTCTTCTCTGCCTTGGGTTTTCAGAGTGCGGAGTGTGTGTGTCGGTGAGCACGCGTTTGTGCTATGGAGACTTGGAGAAGGCGTTCGGCGGAAACATCGAGCGGCGGATTCCAAGGACAAGCGGGAGAAGAGCAGCCGAGAGCGAGCGAGCGTGTACTGCTATAGGAGCCTGACTGGATTCCTACCCATCTAAAACACAAGCTTCGGATGGGCCTTCACATCTTTTCCTTCTTCGGATGATGTTCGCTTGTGTGGAATTATAAAAAGGGGCCATTTTGGCAAAGAATCTTCACTTCATTTGCTTCTAACAGAGCAGAAATAAAATTCTTTATTTCTCTGCTCCTTGGATATATACCCGATTTAAACACTCTGTGATTGACAAACAATCCCGTAAggacctgtaaaaaaaaaaaacgcttgAGGTAGGTGTCTAGCATTTCCAACCCTATTTCAATCATCTCCATCTCCTATTCTATATTTTTTTCTGTCTCTGaaacatttaagagcagttgccCTCCCCCCTCCAGTAGTGTCCATGGAAAAGAGAGCCAGAGTCTTGCTTAATCCGGGGTAGGGCCAgccctctccaccctccccttATACCTCACCCCCCCCTCCCACTTTCGACCACCAACCCATTCAACCAACcgaccccccccccaaccctctcCCCCCGGACGATGCTGAATTATGAGCGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCGTCGAGCCACCCTGCTCTGTGTTGTGTTCCTGATGGCGCGAGCGTGGAGCAGCGCCTCTCTGGCTATGGCGGGGGCAGCAGCGCCAGGCCCTCAGGGCTGCCCACCGCAGTGCTCGTGTAGTAGCCAGCTGAGCAAAGTGGTGTGCACTCGGCGCGGCCTCACTCGCGTGCCCCCGGGAATCCCCGCCAACACGCGCCACCTCAACCTGATGGAGAATGCAATTGGAGAGGTGCAGGCCGACACCTTCCGACACCTGCACCACCTTGAGGTTCTGCAGCTGGGCCGCAACGCCATCCGGCAGATCGAGGTGGGCGCCTTCAATGGCCTCACCAGCTTAAACACGCTGGAGCTATTTGACAACCGGCTAACTGGGGTGCCCAGTGGTGCCTTTGAGTACCTGTCCAAGCTCAGGGAATTATGGCTGAGGAATAACCCCATTGAGAGCATCCCTTCGTATGCCTTCAACCGAGTGCCCTCGCTCATGCGTTTGGACCTGGGCGAGCTGCGCAAGCTGGATTTCATCTCCGATGGCGCCTTTGAGGGCCTGCACAACCTCAAGTACCTCAACCTGGGCATGTGCAACATCCGGGGGGAGATGCCCAATCTGAGCCCCCTGCTGGGCCTGGAGGAACTGGAGATCTCGGAGAACCTCTTCTCCGAAATCAAGCCAGGCTCCTTCCGGGGCCTGCGCTCACTCAAGAAGCTGTGGGTGATGAATTCGCAGATTGGTGTGATCGAGCGCAACGCCTTTGACGACCTGAGCTCGCTGGTGGAGCTCAACCTAGCCCACAACAACCTGAGCGCCCTGCCACACGACCTGTTCTCCCCCCTCAGGTACCTAGTGGAGCTGCACCTCCACCACAACCCCTGGAACTGTGGCTGTGAAGCCATGTGGCTGGCGCGATGGCTGCGAGAGTATATCCCTACCAATTCTACCTGCTGTGGCCGATGCCACGCGCCGGCCCACATGCGGGGCCGCCAGCTGGTGGAGTTGGACCGGGGGGAGACCGGCGTGCTGCAGTGCTCTGCCCCCTTCATAGGTGACGCGCCAAGAGACTTGAATATTTCGGCAGAGCGCGTAGCGGAGCTCCGTTGCCGGACTGCGCCAATGTCCTCGGTTCGGTGGCTGCTGCCCAATGGGACTGTCCTGACGCACGCCTCGGCCCACCAGCGGATCGCCGTGCTCAATGATGGCACACTCAACTTCTCCAACGTGCTGGCGGCTGACACAGGCACCTACACCTGCATGGTGTCCAACGCGGCCGGCAACTCAAACGCCTCGGCCTACCTCAACGTGAGCGCGGCTGAACTCAACACGTCCAACCTCAGCTACTTCACCACGGTGACCGTGGAAGTGCCGGGACCCACCACGGAGATGCCCAAGCCCACAACGAGCGCCCCTAACACTGGTAGGGGGGCTGGAGGAGAAGCAGGGGGAGGTGCGGTGGGCGCtggcaccaccaccaccgcctcGCCCTCCCTCTTTCAGCCCGTCTTCATCTCTACTCCCACCGTTCTGCTCCAGAACACCGAGGGCCAGCCAGGCGCCCGACCATCCTCCGTTCCTGCCTCCAAGTCCGCCACGGTCAAGCCACCCGACACAGTCCCCAGCCTGGACGAGATGATGAAAACCACCAAGATCATCATCGGCTGCTTCGTAGCCGTCACGCTACTGGCCGCCGTCATGCTCATCGCCTTCTACAAGCTGAGGAAGCGCCACCAGCAGCGGAGCACAGTGGCAGCCGCCCGTACAGTAGAAATCATCCAGGTGGACGAGGAGGACCTGCCGCCGCCTGCTTCTGCTGCCAACGAGATCCGAGACCACACGCTGCCCGAGATACGAGACCACACGCTGCCCGAGATACGAGACCACAACAGCATCCAAAAACTGGATTATATCAGCCACAAAACAGACTATGGCTTCCCCAAACCCAAAGCTGACTACAAGGGGGACTACACAATCCACATGCCCAAACCAGACTACATTATACACAAGCCCAAGGCTGAGTACACCACCTATAAACCAACCGtggactacactacccacaaaTCTACAGTGGAATATAGCACCCACAAATCTACACCAGATTTTAGCCTTCATAGACCAAAGGCTGACTATAGCCCATTCAGACCGGAATATAGCACTCACAAGCAGCCGAAAACTGACTATAGCCCCTTCAAACCCGACTACAGTACTCACCCGAGAACACCTAAAGCAGATTATAGCCCATTTAAACCGGATTATAGCAGTAGTACTCACCCGAGAACACCTAAAGCAGATTATAGCCCCTTCAAACCGGATTATGGCACTCATCCAAAACCCAAACCGGACTGTAGCCCATTCAAACCTGACTACAGCACTCACCCACGACCTAAACCAGACTACAGCCCTTACAAACCTGACTACAGCACTCAGTCCAAATCCAAACCGGAGTACATTACACACAAATCCAAACCGGAGTACAGTACACACAAATCCAAACCCGACAACAGTCAATACAAACCCAAATCAGAACACACCCCCAAGGGCGCGCCGGACTACATCGTCTTCAAATCAGGCTACAACAGCCCCCACAAACAGGATTATGGCAACCAGAAACCCAAAATGGATTCCAGTCCCCACAAAGCAGACCATCACAAGGTGGACTACCGCACCCTCAAGCCCAAATACAACACGTACAAGCCAGCAGGACATGGGGCTAAATGGACAGAGAACAACATTGGGAACTCTCTCCCTCGAACCTTGCCCAGCGCCATCACAAACCTCCCTGAGCCCTTTGTCATAAAAACTCACACCAAGGAGAAGGTTCAGGAGACTCAGATTTAAAGCCCCCCACAcaaccccccacccaccccccaggCAAGTCCCAATCCCCATAGCGACCCCTCTCTTCTCATAACAACATGCAATAGAATGCACAACGGGGGAAAAGACAGGAACTTTCTTTTTTGTACAGAGTGCAAAACTTAAAAAGACTGAACATTTCTTGTTGTACATGCTTATAAATAAATCTATATATGAAACTATTGAAAGTACCATGGACTGGTGATAGAGAAGCATattatattaaaaataaatacattgaaaCTATTTTCTAACTTGTAACTTCTATTTAAAAAGACGAGTTGTTTAACATACTGTCTTGACTTTGAGAAATGAGGGTAGACTTGTTAAAATAAAAAAGAAGAGGCATTGtgatttttaattaaaaaacCAATGCTACAGAGAATGCAGT

Function

NR:

description
leucine-rich repeat-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576933.2 True 5252 mRNA 0.53 1 17476135 17481386

Neighbor

gene id symbol gene type direction distance location
LOC110518924 LOC106576509 coding downstream 150274 17322647 ~ 17325861 (-)
LOC110499869 NA coding downstream 288179 17181446 ~ 17187956 (-)
LOC118942893 LOC105020372 coding downstream 698958 16758800 ~ 16777177 (-)
LOC110501003 LOC106576525 coding downstream 735832 16719898 ~ 16740303 (-)
LOC110499846 LOC106576554 coding downstream 775568 16613901 ~ 16700567 (-)
LOC110499880 LOC106576467 coding upstream 648713 18130099 ~ 18134351 (-)
LOC110499883 LOC106576497 coding upstream 722153 18203539 ~ 18232189 (-)
LOC110499895 LOC106609039 coding upstream 1172649 18654035 ~ 18657692 (-)
LOC110499898 scyl2 coding upstream 1202005 18683391 ~ 18701775 (-)
LOC110500916 LOC106609043 coding upstream 1220528 18701914 ~ 18707657 (-)
G1712520 NA non-coding downstream 24101 17451475 ~ 17452034 (-)
G1712474 NA non-coding downstream 98309 17374888 ~ 17377826 (-)
G1712469 NA non-coding downstream 105204 17369864 ~ 17370931 (-)
G1712428 NA non-coding downstream 172651 17301904 ~ 17303484 (-)
G1712427 NA non-coding downstream 175015 17300732 ~ 17301120 (-)
G1712450 snd1 non-coding upstream 144033 17625419 ~ 17655496 (-)
G1712671 NA non-coding upstream 182972 17664358 ~ 17675199 (-)
G1712693 NA non-coding upstream 207149 17688535 ~ 17688978 (-)
G1712702 NA non-coding upstream 216200 17697586 ~ 17697986 (-)
G1712730 NA non-coding upstream 271679 17753065 ~ 17753413 (-)
G1712424 NA other downstream 180400 17295519 ~ 17295735 (-)
G1712050 NA other downstream 472435 17002614 ~ 17003700 (-)
G1711947 LOC106609625 other downstream 730271 16742840 ~ 16745864 (-)
G1713604 NA other upstream 989127 18470513 ~ 18470817 (-)
G1713637 NA other upstream 1113218 18519287 ~ 18605517 (-)
G1713719 NA other upstream 1187448 18668834 ~ 18669325 (-)
G1713755 NA other upstream 1284074 18765460 ~ 18766379 (-)
G1714475 NA other upstream 1969814 19400335 ~ 19453678 (-)

Expression


Co-expression Network