LOC110499878 (LOC106576496)


Basic Information

Item Value
gene id LOC110499878
gene name LOC106576496
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18144533 ~ 18203141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957138.1
tgagagagaatataagagagagagagaataggagggagggagagagtgagagagtgagtgccTGGAACACAatttcacacacattcacacacacagggagacggTTCTCTGCTGCAGCTCCCTGCTGGATTTAGTGGATTCACAACCTCTTCCCTTTCACTTGTGGTTGGGTCACTTCACAGGAGAGCGAGCCAACGTGCCCTAGGGGGCCCGGGGAATGGAGGACAGTATGTGACCGGTGCCTAACTAGCCGCTCCGCTTCACTGTCGGCAACATGCATCACCTTCACCGGATGATGGCTTTGTGCTTATGGTGCTCTCTCCTCGCCATTCTTCTCCACACGACGGTGTTTGCGGATGAAGAGGCGGATCTTACGAAGCCGACAGGACCGCCTGCCAGTAAGGGATGGTCCTATTGGCCCAGCTTGTCCATTTTGCCATCACTCCCGGCGGCGCCGTCGTTTCCGTTTTCTTCGCTCAACCCGTTTGGAGGGAAGTCACAGACTAAGAATGCAGGGCCCCAAAGGACCACACCATCAGAGGGACCAACAAAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACCAACAGAGAGACAAACGGAGGGACGAACGGAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACCAACAGAGAGACAAACGGAGGGACGAACGGAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGAACTGTCAAAGGGACCAACAGAGGGACCAACAGAGGGACGAACGGAGGGACGAACGGAGGGACGAACAGAGCCTGAGAATTCACCGGGACATTCAGGGTctgtggaggagggtattaataAAAGCCCTCAGTCCTCCACCATCACCTCTTGGACTGAAGGTCACCCCAGCTCCACTGAGATAAGAACAGTAACAAACCCACAGACAGTCACTCCTAACAAGAACACACAACCAAACACCCAAGATATCTTAGATTCTATAACCGCTGTCTTAGATTCCATATCCTCTATTTCTATGTCACAGGGGGTTGATATATCCTCCGATAGTCTCACCAGCACAAACATACTGCCAAagacaataacacacacatacctgtcAACAGAAACGTCCCAAACGCCAAAGCACAGTTGGAAGGTCACCACTAAATCTTTCCCCAAGGAAACGAAGATCCAAAATGAACTAGTTCCCCAGGGTGACCCTCTCACAGCCTCTGTCCCATACCTAACGTCCCCACAAACCACAGTCCCCACAACCCTGGTCACAACTCCACCAAGGATCACCGTCAACCTAACACAGGTAGAGGCCACACTGACCAGACAACCCTTTGACTCTGGCACCCCACCCATTTCCCCACAAACCAGGGTCACCACAAGACGTCTGGCCTCGACCGTAAGCACCGACATTGGAACTAAAGAGGCCCCGGTCACCGAAACTCAGCCAAGTCAGAGTTCACCAGACCTGAGTGATTCCGAGGCCAAAGCAGGGCCTGTGGAGGAACGACTGGGAGCAAACACCACCACCAGGACAGACGATAGAACACTAAGGGTTAACTCACCAACACCCGGAGGTCCCCTTCCTGATCCTGAAGACTGGCTGTCCGACCCAACGGGTAGTGAAACCACCTACCTCCCAGACTGCAATCAGGAACATTCGGGAATCTGCAACATCTCCAACACCTGGGCACCGCCCACCACCTCTGACGTCCTCCCCACCGCTAACACCCCCTCCACCAACCAATCAAATAACCCCTTCCTGATTCCGGCCCGGCCCATGTTCGTATCCCTGCATTCTGATTGGAACAGCGCCATGGCCGCCTGGGGATTAGCCTGGGATGCACACGTGTACGGTCTGGGCTCCATCTTCGCCATGGTGACCCTGGCCTCGGCGCTCAACCTGCTGTGCCTGCCCCTGCACTGCCCTTCCGGCTGTGGCTACTTCGCCCTGGTCAGCGTCTTCCTCCTGGCTGCAGGGTGTACCAGGGCTTTCTCCCTCCTCTACGATGCATACGGCCACCAGGACCGGCTGCCCTCCACCGAGGCCTCCCTGCTGCTCTACGAAGCCCCGTTCCCCTGCCTGACTGCAGCCTTCGGCCTGGTCTTCCTGCTCCTCTCTATGCGCTCCAGGATGCAGCTATCCTACTCAGCCTTCCAGAGACCCTGTTTCCTGGCCTGTCTGGTGTTGCTGCACTTCGCAGCAGCTTTTGGTCCTGTAGCACTGCTGAGGCTCTACCAGAGGAGGGCACCCTTCTGCCTCTTCATCTCGCTCATCTCCCGGGGAACGTTTGTGGCGCTGGTTTCTTTTCTATCGGTCgcctattttgtgtttttctgcTACGTACGGGCGGACTCAAAGCACATTTACCACCTGAATAACACCTCGCCCACGCCAGCTGAGCGATACAACCGCTGTCCGTTCGCAGAGAGCAGGGACTGGGACCGTGCGGCTGCGACAGTGTGCCTTTCAGCTCTGTTCTGCCTGGCATGCGCCGGGCTGCAGCTGTACGCCATGCTCCACTCTCTGGGGCTCGCCGGAGGAGCAGATGTGTTCCGCCCCTGGCCTTGGTGGACCTTCCAGCTCAGCTGCAGGGTTTGTGAGGCCGGAGTTTGTCTCACCCTAGCTCTGGTGGTGGCCCAGCCAATCTACTGCTCTGACCACCTTCCCCAGCCTGGAAGCTGCTGGACGGAGCTGCTGGCGATTAAGTCGCCCATTATGCCGGGAACCTACCAGTGGACCCTGAGCCAGCAGGAGAAGCTGGCCATCTGCGACATTGGGCACGGGGAGACAGAGTGCCTACCCCTCTACACGCTGATGGATGAAAGGCTAGGCAGCAGCTTGAACGGCCTGGATCTCCTGTACCACAGCAACCGGGCCTTGGCTTACAGAGACCTGGACCTGAATTTGGATCTGCCTGGCTCCAGCAAGCCCGAGGACAGGTGTGGTGGAGAGGCGTCCGGGGGTTCCTCCTTCACCAGCGACTCCACGGCTGACCTGCGGCCGCCATCGCCCATCAACCTGCGCCGTAGTATTGATGAGGCACTCTTCAGCGAGGACCTCTTTCCCATAAGCCTCTTCAGACCGTCCATACCCTTTTGCTGCAGTGACCTGTCACTCAACATCCCCTACTCCACGTCCACCCTGCCCAATAGTGGCCAGGTGCTTCGAGAGACCCTCTCAGCTGACCCAGGCCTGTACCGGACGACCTCCTGCGTGGAGATGGCCCctcctcccccaacccctctacCAAACCGACCTATGGCAGGCGACACCATCCTGGGtgctccaccatctccctccctgtcctccaacTCCTCTTCCCCAGAACGCTGGAGGGGAAgttcctcctcctgctccctgTACAGACCCTCATTAGGGGGGTCCTCTCTGGTCCTCTGTTCCAGCCCAGAGGGGCACGCCCAACCCCCATCCCTAGGCGGCAGCTCAAGCCGCATTACAGCCTCCAGCCACCAGGgctcacacatgcagagatactATCGCACACTGGGGTCAGCCTCACAGGAGAGTCTTGACCTAGAGTCTGAAGCGGACCGGTCCGTACAAGAGGAGTTCATCAATGTCTGCAGACAGATTGATGCGATGAGCATCTGCAGTGAGACAATTGACCTGTAGGCAGAGCTCTCAACAGTCAAGGGCTAAAGACTGAGGACTGGACTGAAATAAGGTGTTGTGAAGAAGGATTCAAGATGGCGTCACGATCTGTAAGGAGCAACGAGCGGTTTGATTCATCAGGCTAGCCTTCATTGTCAAGAAAGGTAAAACAGTGCGTAAATGAACTGAGGGTTTGTTTCAGAATGTTGACAAGAGTCTTAAGTGCCACATGCCAAGGGGAAATTTGTGacatttttttccacatttgCTATTGAATGATGAAGTTTGATACGTTAATAAAAGTTGCGTTTTCCTGTGCATTTCAAGAGGGGCACAGGAAAGCAAAATACATTTGTACAAAACGTTTTGCATTCAAATAAATAATACTGTGATTGAAATAAGCACTTAATAAACGACTACTGAAATCTTGTTTTAATATTTTAGCATACTCTTATCCAGATTGTGAGTGCATACATTCTCATACTTTTTTTCCTTCTCCATACTGGTCCTCTGTTGGAATCAAACCCTGGTGTtgccagcaccatgctctaccaactgagctacacgggaCTGTACTTTACATTTTCATAGTGTAAAATTGTTATTCAATGCCAAGTTGTTTCAATTCAGTCAAATATATTGTGTTTGTGAGCCTCTACATGAAGAATTAGACATGTTAGAGATGTGCTTTAAGATCCATCCAATAAAGGAAAGCTTGATTTGAACTAAAGGCAACATTGTAGCGGAGCAGCAGTGAACTATACTGGTAGGATAGCACCGATACTATTGTGCTTTAACTTCGGACTGACACACAGTACATTTTATATGAAGCCGCTTGATATTttattaatgtttaaaaaatattttactcAAAACATGATTAAATAAAGAGAAATGTCAACAA

Function

NR:

description
LOW QUALITY PROTEIN: proline-rich transmembrane protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957138.1 True 4607 mRNA 0.53 3 18144533 18203141

Neighbor

gene id symbol gene type direction distance location
LOC110499879 snd1 coding upstream 489026 17344431 ~ 17655507 (+)
LOC110501011 LOC105020379 coding upstream 824542 17272005 ~ 17319991 (+)
LOC110499865 LOC106576572 coding upstream 897241 17088969 ~ 17247292 (+)
LOC110516649 LOC106609628 coding upstream 1081153 17002417 ~ 17063380 (+)
LOC110501009 LOC105020375 coding upstream 1170755 16914013 ~ 16973778 (+)
LOC110499885 NA coding downstream 39953 18243094 ~ 18244775 (+)
si:dkey-159a18.1 LOC106609576 coding downstream 43987 18247128 ~ 18268691 (+)
LOC110499882 LOC106576502 coding downstream 67646 18270787 ~ 18290199 (+)
LOC110499881 LOC106576460 coding downstream 163126 18366267 ~ 18374630 (+)
LOC110499888 LOC106609036 coding downstream 308534 18511675 ~ 18516033 (+)
G1713114 NA non-coding upstream 3046 18141219 ~ 18141487 (+)
G1713099 NA non-coding upstream 15936 18128384 ~ 18128597 (+)
G1713097 NA non-coding upstream 18711 18125507 ~ 18125822 (+)
G1713081 NA non-coding upstream 29978 18114254 ~ 18114555 (+)
G1713068 NA non-coding upstream 43274 18101028 ~ 18101259 (+)
G1713144 LOC105020386 non-coding downstream 20868 18224009 ~ 18232407 (+)
G1713183 NA non-coding downstream 112645 18315786 ~ 18318199 (+)
G1713196 NA non-coding downstream 134653 18337794 ~ 18338056 (+)
G1713197 NA non-coding downstream 135892 18339033 ~ 18339248 (+)
G1712658 NA other upstream 475947 17666280 ~ 17668586 (+)
LOC110499863 tap26 other upstream 1403315 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1423981 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 1615717 16318043 ~ 16528816 (+)
G1713262 NA other downstream 294006 18497147 ~ 18500874 (+)
G1713384 NA other downstream 531650 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1181831 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1906057 20109125 ~ 20113891 (+)

Expression


Co-expression Network