LOC110499885


Basic Information

Item Value
gene id LOC110499885
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18243094 ~ 18244775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470035.2
GAAAGAGACTCACATTAAATCATTAGCAGGCCTATGTATCAAGAATTGGAAATTCCCAACGATTTGATGATGTCAGTACACACAAGCCTTGAAGCAAGAGAGCGCTGCGATGCATCATGACATTGCGACATTGCCGTGTGATATCAAGAGGGGGGTAATTTATTTCCCTCGACTGTTTTCAAAGCGTTTTAAAGAAAACTTGAGGAATATCTAAATCCCGTGTCGTCATTAGCAAGGAAAGTCTGTCTTCCACGCCAATCTTGGGGCGAGAGTTCTACTACTCTGCACAAGTTGAAGTTTAAAATCGTCAGGCATATTGTGACGCTGCGGTTGTTCAACCCAAGACCACGTCCATTTAACTGGAGAAGCTATGATGACAGACGTCTTGAAGATGTTTTTTATCGGGACAGCGTTCACTGTCCTCGCAGCGCTGATGGGAATGGTGGATTCATTTGGTGGTCTCATGTATGTCCAAGACGCGGATCCTGCAGATTATTTACAGTTGGACAGCAGTACTGACATACGGATGTCTTCAACCCATTCGAGAGGTTCAGGGAGTACCAAACGCATTGAATGATGATGAGGACGTCATGTGGAGTGGAATTAACACGAACAGGCTTGGTTTATGTTATGTTTTCGTTTGTAAATGACTGCTTGCACAGTACAATGTGTACACAGATTTTTACAAAACATTATTGAGCCTTTCATCATGGTTCGCTTTCAGTTTCACTAGTTGGTGTCCCACTCCCATTGTGCAGAAACTGGCTGAATCAGCGCtggttccacgtcatttcaacccccgaaaaatctatgtgatgacgttgaatgaGCGTGGATTGGATTTgtaaaaagtcatcaacgtatgGGCACTCTGTCTCTTTTTTTAACCTGAATCCAATGACATTgtgatattttttgtttgttgaattGTGCAATTTAGAACTAGACGTCGAACTGACGTCGGTGCGCAGTGGGGTTTGATTTATACAGGTCACTACGGATTTGATGAGTTGTTTAATTTGTTTTGCACATTTGAAGAACACCCTAGTTGATGTTTATAGTAGGCTATTACTAAAGTATTAGGTCATATTGACAGGTATTACTATGTAGTTATATCCACTCTATACTATACTAATACTTGGTAGGGCAGCAGGTAGAGCGTTGGGGCAGTAACTGAAAGATCGcaggtttgaatccccgagctgactaggggGAAAAATATGTCTGTTCACTTGAGCAAGTTACTTAATTTAGCAAACGCTAAATCGCTCTGGATgggagcgtctgctaaataacaaaaatgtaCTAATCTGTATACATGGTATTTGCCTATATCGTGTAGGCTATTTGTTGTATATTGAAGATCACATCATGTGTAAAAGAAAAAGGGCTACATTATGCACTAATTGACTCTTCATCATGCACTGTAATATTGTGTCATAAAGAAAGTTGTAAAGAATAAACACTTTTATAGGCTATTGTCAATAAAATGAATAGACACTA
>TU1962727
GAAAGAGACTCACATTAAATCATTAGCAGGCCTATGTATCAAGAATTGGAAATTCCCAACGATTTGATGATGTCAGTACACACAAGCCTTGAAGCAAGAGAGCGCTGCGATGCATCATGACATTGCGACATTGCCGTGTGATATCAAGAGGGGGGTAATTTATTTCCCTCGACTGTTTTCAAAGCGTTTTAAAGAAAACTTGAGGAATATCTAAATCCCGTGTCGTCATTAGCAAGGAAAGTCTGTCTTCCACGCCAATCTTGGGGCGAGAGTTCTACTACTCTGCACAAGTTGAAGTTTAAAATCGTCAGGCATATTGTGACGCTGCGGTTGTTCAACCCAAGACCACGTCCATTTAACTGGAGAAGCTATGATGACAGACGTCTTGAAGATGTTTTTTATCGGGACAGCGTTCACTGTCCTCGCAGCGCTGATGGGAATGGTGGATTCATTTGGTGGTCTCATGTATGTCCAAGACGCGGATCCTGCAGATTATTTACAGTTGGACAGCAGTACTGACATACGGATGTCTTCAACCCATTCGAGAGGTTCAGGGAGTACCAAACGCATTGAATGATGATGAGGACGTCATGTGGAGTGGAATTAACACGAACAGGCTTGGTTTATGTTATGTTTTCGTTTGTAAATGACTGCTTGCACAGTACAATGTGTACACAGATTTTTACAAAACATTATTGAGCCTTTCATCATGGTTCGCTTTCAGTTTCACTAGTTGGTGTCCCACTCCCATTGTGCAGAAACTGGCTGAATCAGCGCtggttccacgtcatttcaacccccgaaaaatctatgtgatgacgttgaatgaGCGTGGATTGGATTTgtaaaaagtcatcaacgtatgGGCACTCTGTCTCTTTTTTTAACCTGAATCCAATGACATTgtgatattttttgtttgttgaattGTGCAATTTAGAACTAGACGTCGAACTGACGTCGGTGCGCAGTGGGGTTTGATTTATACAGGTCACTACGGATTTGATGAGTTGTTTAATTTGTTTTGCACATTTGAAGAACACCCTAGTTGATGTTTATAGTAGGCTATTACTAAAGTATTAGGTCATATTGACAGGTATTACTATGTAGTTATATCCACTCTATACTATACTAATACTTGGTAGGGCAGCAGGTAGAGCGTTGGGGCAGTAACTGAAAGATCGcaggtttgaatccccgagctgactaggggGAAAAATATGTCTGTTCACTTGAGCAAGTTACTTAATTTAGCAAACGCTAAATCGCTCTGGATgggagcgtctgctaaataacaaaaatgtaCTAATCTGTATACATGGTATTTGCCTATATCGTGTAGGCTATTTGTTGTATATTGAAGATCACATCATGTGTAAAAGAAAAAGGGCTACATTATGCACTAATTGACTCTTCATCATGCAC

Function

NR:

description
hypothetical protein EH28_17703

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470035.2 False 1503 mRNA 0.40 2 18243094 18244775
TU1962727 True 1425 lncRNA 0.41 2 18243094 18244697

Neighbor

gene id symbol gene type direction distance location
LOC110499878 LOC106576496 coding upstream 39953 18144533 ~ 18203141 (+)
LOC118942894 NA coding upstream 56769 18185346 ~ 18186325 (+)
LOC110499879 snd1 coding upstream 587587 17344431 ~ 17655507 (+)
LOC110501011 LOC105020379 coding upstream 923103 17272005 ~ 17319991 (+)
LOC110499865 LOC106576572 coding upstream 995802 17088969 ~ 17247292 (+)
si:dkey-159a18.1 LOC106609576 coding downstream 2353 18247128 ~ 18268691 (+)
LOC110499882 LOC106576502 coding downstream 26012 18270787 ~ 18290199 (+)
LOC110499881 LOC106576460 coding downstream 121492 18366267 ~ 18374630 (+)
LOC110499888 LOC106609036 coding downstream 266900 18511675 ~ 18516033 (+)
LOC100301653 LOC100301653 coding downstream 323093 18567868 ~ 18596759 (+)
G1713144 LOC105020386 non-coding upstream 10687 18224009 ~ 18232407 (+)
G1713118 NA non-coding upstream 95672 18146510 ~ 18147422 (+)
G1713114 NA non-coding upstream 101607 18141219 ~ 18141487 (+)
G1713099 NA non-coding upstream 114497 18128384 ~ 18128597 (+)
G1713097 NA non-coding upstream 117272 18125507 ~ 18125822 (+)
G1713183 NA non-coding downstream 71011 18315786 ~ 18318199 (+)
G1713196 NA non-coding downstream 93019 18337794 ~ 18338056 (+)
G1713197 NA non-coding downstream 94258 18339033 ~ 18339248 (+)
G1713202 NA non-coding downstream 106262 18351037 ~ 18351273 (+)
G1713203 NA non-coding downstream 107410 18352185 ~ 18352390 (+)
G1712658 NA other upstream 574508 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1299305 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1501876 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1522542 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 1714278 16318043 ~ 16528816 (+)
G1713262 NA other downstream 252372 18497147 ~ 18500874 (+)
G1713384 NA other downstream 490016 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1140197 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1864423 20109125 ~ 20113891 (+)

Expression


Co-expression Network