LOC110499881 (LOC106576460)


Basic Information

Item Value
gene id LOC110499881
gene name LOC106576460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18366267 ~ 18374630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576941.2
CCTTTCCTCCAACACATTCGTTCACTCTGGTGGAGTAAAGTGACATTGAAAGGGTGCCTCAACGTGGCATCCTAGAGAAAGACCCCTCTATTTACCAACAGCCGTCACCACACTGTACCGTCCTGGCACACGTAGTACCCTCCGAAACGTCCCTACCTCGACTAATAAATGACCATCATAGGCGCCAGAGAAATAAAACAAGCGAAAGACACGGATCATTATCCGAACGTGGAGAGAAAAACAACGAATCATTTTCGGAATCATATGTAGGAAAAGCGCACGAATCGTCGTCGCAGTTGCCTTCTCAATGCATACCCTTTGTGCTCGGGGAACGATGAAACCAGAGATTAGCGCCGCGGTCGGGTTTCTGTCGAGATTTCTGCGGATAAAAGGACACGTAAATGACAGACAGCTTCAATCATTCAGCGCAAGTttacaggatattttgtcagaGCAATACAAGCACCACTGGTTCCCCGACAGGCCCTGCAAGGGCTCGGGCTACCGCTGCATCCGCATCAACCACAAGATGGATCCCCTGgtggggcaggcaggccagcgcaTCGGCCTGACCATCAATCAGCTCTACCTGCTGCTGCCTAGTGAGCTCACCCTCTGGGTGGACCCCTTCGAGGTGTCCTACCGCATCGGCGAGGACGGCTCCATCTGCGTGCTCTACGAGTCCCAGCCGGTGGCCCCGGCGCCGTCGGGAGGCAGTGCGGTCACCTCGACCCCCATGGTGGACAGTCACATCAGCTGCAAGGAGGCGGCGGGGATGCTGGGCAGGACCAGCCCTTCCAAAGCCTACAACATGATGACTATGTCCAGCTAAGGGCTGCCACCCGCCACGTCGGGTCGTGGGTTTCGCCCTAGTTGGTCGATGGCGAACCTTTTTAAAGCTAAaaagaaatgaaatgaaaaagagaaaaaaaaggaggAGAAAAGGCAGAGGATGTGGCCTATCGTCCAGGTGAAACCTTGTAGGTTTGATATTTCTTTCTCCTTCCTCGCTCCATAgtctgttatgttgtgttgtgggaTCTACCGGAGGCTTCGTTTTTTTTCcctgggggggcgggggggggggggggctgtgtggaGCGTGGAGCTGTTGGGGGCAGCTAAAACAAACCAAGAATCCGAACAGAGAAACAGCGCAGAGAAGGGGctgctttttgtttttgtttttttacacagATCTATCATTGTTGACTTTGCACTTTCTTCTCCACGTGGTTACAATGGGTACCAtgtcaccaccacccccaccaccctctCAAAAGCTTCAAGGAACTGCTGTCAAGAACCGTACCGTTAAATTTCAGCCTTTTATCTACTTCCTGTTGTTATTGGGTGTACTTCCTGTCTAGGAAGGAAGTTAAGGGGCTGAGGTCCGGACTGTGCCTATTTCTAGGTCAGTCTCTGGGGAAACGCCCTGAGTCATTTTCTTCTAAAACCCAGTTTTTGGACCATAGGGTATTTCTTTACCCCCAGAGGCTGCCCCATATACCAGCGTCGAGCTTCAggaagcccctctccctccatatgGAAGTGCAGTGGAATGCGCTGTGACACCTGTTGCTAAGGACAGTAGTGTGTCACAGCGCACCCCACCAACACCCCCAACCATGTATGTGTAGCTTTCTGGGGAGGGCTGGGTATTTGTCCCCTCCCCTTCGATCAATGTTGGTTTGAAATTCACAATCAAGTTCTCGTTTTGtttatatccctccatccccaccctGACCTTTGGCCCTCTCCAAATTCAAAGTGTAGCATAGGTGGCACTATATTCTCACCGAAATCTGGAtcgtttgttttggttgttgtggCCCTGTCAGAAGAAATGACATTGAATGCACTTTTGACATTTAGATTGTGTGGGATGTGTACTTCTCGAGTAAACCATCTTCATTCCATTCGCTCCAATGTCATCTTTCATGAGTTCCCCtcctttttttttgtaaattactCACAGCTCTTACGTCAGGCTAGACCCCACTCTATAGAATTGGGGAGAGTAACTGAAGGTTTTAAAAAGATTTCACACTGTAAGCATTTCATTCAGATCCGTTCAGGTGTTGGTAGGTAGGTGCGGTTTGGTGTCGTGTCAGGTTAGGCGTCTGTTGTCCGTTTGTAAGGCACTTTTCTCGGAAggccaacgcacacacacacacacacacacacacacacacacacgcacacacgcacacacacacagatggcaaGACACTTATAGAACTCTGATAGATCTCTCTGCAGCTGTCGAGGGGTGTGTGAGTGTAGCCAAAGGGAAGTCTGTACGCCCCTGACTGTTTCTATCCAACTCAGTCCCAATGGCCTTGTCAGGCTTTCTCATGTGTTTTTGTTAGACTTTGTTCTTGTATTTGTGATTGAAGATGAGTCCAAGGCTTTCAACACCTCTCCTTTCTTCTGTCTCTCAGTTTGGGTGAGGGGTGCGTTGCCCAACGTAGGACTTCAATGTTACACCTATGAGCCATTCTCTGGAGAACCGAGAGAGAACCAGCGTAATGTTAGCCAGCCTGGTTCGAGGTGCTGCTGGACCCTCTCTGGAGGTGTTCCTGTCAGGGCAGACAGACACAAGAAGCCGCTCTGGTGCCACATATCACCCACAGCCAGCTAACCAACCAGCCAACCCCCTCCCCCCAATAGCAGTACGGAGATAGCAGTAACACATATCATCTATCCTCGCCCCAGGGGAGGGAATGGAGGTGGTGCGGGGGCCAGGGCCGGATACTCTCGTCCAGGGCAGCTACAATCCCTCCGGCCCCCTCTAAACTAACCTCCACCCAACCAACTTGGCGGTGGAGAGCAAAGCCAGCACATGCACTCAGCGCACTCCGTCTGCACTGGGAGCCCACATAGAGACAGGCAACAAAGAGGAGTCAAAGGATAGGAAGTGATGGTACACAGTCCAAGTTTATTTTTTTCTTAGGCTGAGCACTGAACTAGTTTACATGGGTGCAATAGGACGATGGTGGTGTCAGTCGTTCTATAGCTCACTCCTGGTTGGCCGCGCCACAGACAGACGATGTGACAGGTTGTGGGGTTTCGGGGCTTTTATCCGCTAAGCTGGCCAGGCTGGGCACCAGCCCATCAGACCTACATGTGCTGCTTTAAGCTCCCTAAGCATAGAGGATCATGGGTAATGGATCTGTGGTTGTTGATGCACTGCACACCCTATCCTCCCTcatccactcccctcctcctcactgtcctccctctctccatttctcctggTGCTCCTTCAGCAATCTGTGGAAAAAGCAGTGTCTCCACATGAGCCAGATGGACATGTCTGAGAGAGTAGCCCAGAGctttgttgttgtggttgaaAACCAGCTTTTTAAAAACCTTGCAGCTCCTCTATTGCTTCGATTATGCCAGCTATCGATGTTGTTATGAGATTGGTCTGTGTTTCAGACGTAGCAAGTTGTCCCTCTTTTTGCTATATGTATTTTAAAGTCACAGAGGTAGCAtctcatcacccccccccccccccccccttcgccCTAGTCCGATCATCTATCCCAATTTGAACAGACTTCATTTTTAGACCTACCAAAAAGGAAACGAAGCCGAAATTGTTTGATCTCTTTCTCAACAGTAACACCACCACCAAAACAATTGGATTTAGTCCACAATATCGGATCTGTAAATGCATCCATTCAGCCTTTGCGCACATAGGTTTCAGAAACGTTGTGAAAAGTGTTTTTGAATAGTCGGAGGTAATAGCACATAAAATGCACTAAATATGTCAAGTTGAAGTTGTGACGTTTTTGAGACGCGAGGAGTCTCTTCTGGAATGTATTACCAAACTCAGGCCTCGGACATTCAATAAAAACCCTTCTGGAAAAGCTGTGCATGTTAAGACGTGGGACGGGAAGGGAGTAGTCGTCAATGATTCATCAATGATTTTTGAATTATTGCCACTTTCACATTTAGGGTGTTTTACATATTCTAGAATCTATTGCTATTGTACGCCATATGGTAGAATACATGCATAACATTACACAATGGGAAGTGCCAATCATTTGTTTTGAGGTGTTTAGATGTATTTCTTTTGCATTTCCTAGTTTTAACACGGATAACTATTTTCCTAAGTGAAGCCATTTGTGATGGGAGTGTTGGCAAGGACCAATCGGTTTTGGTAAAAGAAATATCATTTTCCAGGCCCTGTACTGATAGACTTATCCTTTGTTTTTTTTCAAACTTACAAAACAAGAAAAACGTTTAAAAAATCTGAGCATACCCAAGAAGAAAAGCTGTCTACTCTACCTTGTGATTTCATGTCAGTACATCTTTATTGTGTTCATTTTCTTTTCCTTGGGTATGTTGTGATGAACTGCTGTAAATTTGTACAGTTCATGTAAATTGATTGTGCGAAAGTTGTACAGATTTCTATATTTTGGaagaaaagtttttttttcttctctgtaATAAAATATTTCCTATCTTGGCAACATA

Function

NR:

description
PREDICTED: protein BTG1-like

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576941.2 True 4488 mRNA 0.48 2 18366267 18374630

Neighbor

gene id symbol gene type direction distance location
LOC110499882 LOC106576502 coding upstream 76068 18270787 ~ 18290199 (+)
si:dkey-159a18.1 LOC106609576 coding upstream 97576 18247128 ~ 18268691 (+)
LOC110499885 NA coding upstream 121492 18243094 ~ 18244775 (+)
LOC110499878 LOC106576496 coding upstream 163126 18144533 ~ 18203141 (+)
LOC118942894 NA coding upstream 179942 18185346 ~ 18186325 (+)
LOC110499888 LOC106609036 coding downstream 137045 18511675 ~ 18516033 (+)
LOC100301653 LOC100301653 coding downstream 193238 18567868 ~ 18596759 (+)
LOC110499892 lum coding downstream 239053 18613683 ~ 18617804 (+)
LOC110499893 LOC106576462 coding downstream 246547 18621177 ~ 18628411 (+)
LOC110499894 LOC106609040 coding downstream 256013 18630643 ~ 18654262 (+)
G1713203 NA non-coding upstream 13877 18352185 ~ 18352390 (+)
G1713202 NA non-coding upstream 14994 18351037 ~ 18351273 (+)
G1713197 NA non-coding upstream 27019 18339033 ~ 18339248 (+)
G1713196 NA non-coding upstream 28211 18337794 ~ 18338056 (+)
G1713183 NA non-coding upstream 48068 18315786 ~ 18318199 (+)
G1713187 NA non-coding downstream 13119 18387749 ~ 18388238 (+)
G1713189 NA non-coding downstream 14729 18389359 ~ 18389728 (+)
G1713224 NA non-coding downstream 42282 18416912 ~ 18417385 (+)
G1713226 NA non-coding downstream 48459 18423089 ~ 18423779 (+)
G1713245 NA non-coding downstream 71197 18445827 ~ 18446125 (+)
G1712658 NA other upstream 697681 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1422478 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1625049 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1645715 16719920 ~ 16720552 (+)
G1713262 NA other downstream 122517 18497147 ~ 18500874 (+)
G1713384 NA other downstream 360161 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1010342 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1734568 20109125 ~ 20113891 (+)
G1715392 NA other downstream 2183792 20558422 ~ 20558751 (+)

Expression


Co-expression Network