LOC110499888 (LOC106609036)


Basic Information

Item Value
gene id LOC110499888
gene name LOC106609036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18511675 ~ 18516033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957150.1
gtgtgtgtgtcatactaTTTGGGGGTCCTCATTCCTAGAGGACTGCTTGGTTCAGCAGCGTTTCTCCTTGCATTGAGAGAGTTTGGTATGACTCCCACAGGACAACATACACAGATGCATGATATTGGCTCTGACGTCTAAGGGCACAGCAGATAGAAGACCATGGAAGAACTCACTCTGCTACTCTGGCTCCTGATAGTTCCTCTTCAATCATTTGTACTTCAGCCCAGAGTGGAAATGATCCTCATAGAAGACTCTGTCAGAGAAACAGATCCCTGGTCAGACTGGAGACctgagagactgagggagaccAACACAGCAgacggagaggagggtgaagaaCTCACTGCAACCCACCctgaagagaagagggaggaagagggtagGAGTGAGGATGGACTAACTCCAGAGACTGTATCTGAGAAgtggagaatagaggaggagaagggggcagCAGAGCAGGAGGGCCATGAGGAAGagcgagggatggaggaagagagaacgCTGGTTGGAGGGCTTGattacagagagaagaagagatttgAAAATTGGGAGATAGAAGCTGATGAGGaacatgaagaggaggaggagagaggagataatggagaggggagacatGAAGAAGGGATTAGATCAgatgatgaggagagaggtggtaaggaaCAGAGAGcatatggaggagaggagaaactaGAGGAAAACCTGAGAGTTGAGGAAGTTAAAGAACCCAGTGTAGATCAAAGCGAGGGAAACTACTTAGTCGTTACACACATGGACCTCCCCTCTCCAACCAGcacttcctcctctcctgtagaaAAAGTAATGGACACTCAACCTGTCAATCAAGCTATCAACGAACCCATGTCCCCTCCCCCTGCAGCTATGCCTGTTCCACTTTATGATGTCACTCCTCCACCTGCCACTCAACATGGCCCTCCACCAGTTacaccctctaccccctctcaaGTTCCAGAGTCTGCCACTCATGCTCTCACTCAACCTGCCAGTCATATCCAAGACCCGGCTCCAGAGGCAGAGGAGGCCATCTCATTGGTGTACAGTGAGCTCATTATGGTTCAGAGTGTGACTGACAGCTCCCAGACAAAtctcagggagggggagagtttTGTTTCGCAATCGATGGAGGTCAAAGTTGGCCCAATTATCAAGGTTTCAGTCAACGACAATCAGACTGAGAGGAACAGCATTGTTTTTCTCAAAGAGACAGAAAATACAGTCAAGCAGCTAAAGTCTACAGACAAACCAAAACAAGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAACCCAAAAGAGATGACAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGCCAAACCCAAAGTGACGGTACAGACAAACTCTACACCCAAAACACAACAGACAAAACCTACAGCCAAACCAGCAGTGCCAAAACACACAATGAAGCTGACACAGACTACCAAGAGTATCAAGACAAAGACAGGGAAACATCAAAAGAAAGACAAAATAAATGAGAGGAAAGGTAAACCTCTGAAAAAGGACAACAAAACCAAAGAGACAAAACAGGAGAAGAAGGAGGGCACAAATCCTGCATACTTCCCCTACTTCAAAGACAGCTACTGTCCCCCGGAGTGTGCCTGCTATGGACGAGTGGTCCAGTGTTCCGACAAGGGGCTGGAGAAGGTTCCGTACGGCATCCCTTATAACTCCCGCTACGTCCTCCTGATGAACAACCGCATCGACAGCATTCAGCTGGACCTGCTCAATGAGTACCTGTCCATGGAGTTCCTGGTGCTCAGCAACAACCGGCTGACAGACGGCTCCATCGAGGGGGCCTTCGAGGGCATCCCGGCCCTGAGGCGGCTCTACCTGGACCAAAACCTACTGGAGAGTGTGCCCACAGACCTGCCCGCCTCCCTGGAAGAGCTGCGTCTGGATAACAACCAGCTTAATGTGATGTCGGAGGGAGCCTGGGCCAACTGCCCCGGCCTGCTGGTCCTCAGCCTGAGCAACAACAGCCTGGGGAATGTGAATGATACTCTCCCCGCCAGTGTGCTCTCACCTCTGGGCAGCCTGCGCACGCTCAGCCTGGACCACAACCGGCTGGCCTCGGTGCCTCTTGGCTTACCTCTATCTATCAGGGAGTTGTACCTCCGTGGCAACCTTATCCAGCAGTTTCCAGGGGAGGCCTTCATGGGTACCTCGGAGCTGGTGATTCTGGATCTGAGTGCTAACCGGCTAACCAACCATGGCCTTCTCAGGGAGTCCCTCATCAACGCCACCCACCTGGAGAGCCTCAACTTAGAGGGCAACCAGCTCAAGAAGGTACCCCgccacctcccctcttccctcaAAACCCTGAACCTGGAGGGCAACCTCATCTCCTCCCTGGGCAAAgcctccttcctccacctcccccaccTGGAGCACCTGGGCCTGGCCAGGAACAAGATAGCCAGGGTGGCCTCGGGGGCCTTCAGGGCGCTGCCCGTCCTGCACCAGCTGGACCTGTGTCACAATGCCCTGAGCCAGGTGCCCAGGCAGCTGCCCCGGGGGCTACACTCAGTGGCACTCACACACAACAAGATCCACTCAGTGCCCCGCGACGCCTTCTGCTGGGGGGGTTCAGACCCCGGCCTCAGCAACCTGGTGCTGGTGCAGCTGGAGCACAACCTCATAGACCTGGGCCACATGGACGCAAAAGCCTTCCACTGCCTCAGAGGCTTCCAGATGGTACACTTCTACTGAGCTGCAGTCTATAGAATCCTGCAGGACAGTCAAACTGCAAATATAGATTATAGACAATCCAACAACTGAAAACAATTGCAGGGGTTTTTCTGCTCAACCTGAAAGTCTGTTGGGCTCTAAAATGGCGGTAAAATGTTCTGCaatacacagagaaacaaacatcATGTCGGGAGCTGATTTTGATTCAACATTACAAGATAACAATGCAAGATGGCCAGTTGAGTGAACTTGGATCTCAATGTGGAtagctatactgtactgtatgtcgtCGCTTGGGTAAAGCTGTGATTGATGGAAGCCGTGATATGTGTTCAGAGAAAATACTTGTTTGAACCGCTCCCATGAAGTCTGTGTTGAAAGACTATGGCCTACTTAAAGGTCAATGAtgccacatacagttgaagtcggaagttcacatacaccttagacaaattcatttaaactcagtttttcacaattcatgacatttaatcctagtagaaattccctgtcgttggtcagttaggatcacc

Function

NR:

description
extracellular matrix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957150.1 True 3449 mRNA 0.51 4 18511675 18516033

Neighbor

gene id symbol gene type direction distance location
LOC110499881 LOC106576460 coding upstream 137045 18366267 ~ 18374630 (+)
LOC110499882 LOC106576502 coding upstream 221476 18270787 ~ 18290199 (+)
si:dkey-159a18.1 LOC106609576 coding upstream 242984 18247128 ~ 18268691 (+)
LOC110499885 NA coding upstream 266900 18243094 ~ 18244775 (+)
LOC110499878 LOC106576496 coding upstream 308534 18144533 ~ 18203141 (+)
LOC100301653 LOC100301653 coding downstream 51835 18567868 ~ 18596759 (+)
LOC110499892 lum coding downstream 97650 18613683 ~ 18617804 (+)
LOC110499893 LOC106576462 coding downstream 105144 18621177 ~ 18628411 (+)
LOC110499894 LOC106609040 coding downstream 114610 18630643 ~ 18654262 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 155880 18671875 ~ 18683306 (+)
G1713287 NA non-coding upstream 7355 18502266 ~ 18504320 (+)
G1713285 NA non-coding upstream 19662 18491635 ~ 18492013 (+)
G1713282 NA non-coding upstream 24181 18487285 ~ 18487494 (+)
G1713281 NA non-coding upstream 24453 18486931 ~ 18487222 (+)
G1713274 NA non-coding upstream 30297 18481059 ~ 18481378 (+)
G1713233 NA non-coding downstream 1706 18517739 ~ 18518368 (+)
G1713324 NA non-coding downstream 70039 18586072 ~ 18586667 (+)
G1713332 NA non-coding downstream 96354 18612387 ~ 18612629 (+)
G1713351 NA non-coding downstream 144322 18660355 ~ 18660684 (+)
G1713352 NA non-coding downstream 147139 18663172 ~ 18663507 (+)
G1713262 NA other upstream 10801 18497147 ~ 18500874 (+)
G1712658 NA other upstream 843089 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1567886 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1770457 16740369 ~ 16742407 (+)
G1713384 NA other downstream 218758 18734791 ~ 18737436 (+)
G1714090 NA other downstream 868939 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1593165 20109125 ~ 20113891 (+)
G1715392 NA other downstream 2042389 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2482565 20954576 ~ 21004439 (+)

Expression


Co-expression Network