LOC100301653 (LOC100301653)


Basic Information

Item Value
gene id LOC100301653
gene name LOC100301653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18567868 ~ 18596759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956481.1
tcttcctctctcagccccttcctcctccccttcgGCCGTGACAGAGCACACCTGCTTGGTCTTGGCTGCGCGCGCTCTCAGTGCAATTATCGCTCGGCCCCTTGCAGCACAGTGCAGAAGGCTCACAGTGATTCAGCCTATAGCCCCAACTGGATATTTGGAAGGAAGACCATCTGACCTCGGCGCACTCTaactctctcgctcgctctcccacGATTCTAAAGAGCACAGATCCCTGACAACTGCTTCCCGGAGACGTTACCCTACAGCAGGGTCAACTACAACGCTGTGTGGTCTAGATACCTAGACACGGACTGAACCCATGCTCCAGGACAAAGGCACCATGAGGTCAGCCTGTCTCTCCCTGCTCCTGGTCACAGCGTGCTGGTCACTTCCCTTCCGCCAGTCGGGCTTCCTGGACTTCATGATGGAGGATGAGGCGGGCTCTGGCTTGCCAGAGGTGCCCATCGAGCCCAGCGTGGACATCCCCACCATGCCCGAAGGACCCAAGTGCCCCTTCCGCTGCCAGTGCCACCTGCGCGTGGTGCAGTGCTCCGACTTAGGCCTGAAGAGTGTTCCAGATGAGATCCCTGCAGACAGCACCCTGCTGGACCTGCAGAACAACAAGATCACTGAGATCAAGGAGAATGACTTCAAGACTCTGAAGGGACTCCAAACCCTGATCCTGGTGAACAACCAGATCACCACAATCCACCCCAAGGCCTTCATTCCCCTGGGCAAGCTGCAGCGCCTCTACCTCTCCAAGAACCACCTCAAGGAAATGCCCGCCAACATGCCCAAGAGCCTGCAGGAGCTTCGCATCCACGAGAACAAGATCACTAAGATCAAGAAGGCCTCCTTCGAGGGCATGGCCCAGGTCATCGTCATGGAGCTCGGCTCCAACCCCCTGAAGAGTGCAGGGGTTGAGGCTGGGGCGTTCGGGGCCCTGAAGAAGGTCTCATACATCCGCATTGCAGacaccaacctgacagagatccCCAAAGgtctgccctcctccctctccgaGCTCCACCTGGACAGCAACAAGATCACCAAGGTGCAGGCGGACAACCTGAAGGGCCTCAAGAACCTGGCTAAGCTGGGACTAAGCTACAATGAGATCAGCCAGGTGGAGAACGGTTCTCTGGCCATGGTTCCTCACCTCAGAGAGCTTCACCTGGACAACAATGCCCTGACCACCGTGCCTGCAGGCCTGCCTGACCACAAGTACATCCAGGTGATCTACCTCCACAGCAACAAGATAGGGGTGGTGGGAACCCAGGACTTCTGCCCACCAGGCTACAATACCAAGAAGGCCATGTACTCTGGCATCAGCCTGTTCTCCAACCCCGTCCCTTACTGGGAGGTGCAGCCCATCACCTTCCGCTGTGTGTTCGACCGCTCTGCCATCCAGCTGGGCAACTACAGGAAGAAGTAGAGAAAAAGTAGACCacccccagagagagggagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaccgcAGCCCCCCATCTACCCCACAACACTGATCGGCAACTTTATCCCCATTTTAAAACCATAACGAACATCCAATACAGTTTTAACAGTTACAGTACATAATGTTTTCATGAGCAAAGACAGAACAGTTACAAAACTCAGTACCAAACCTTCCATAGATGGCTTAGTGATAACTCAAACCAGCTCTGTATGCAAACAGTTCATTTATTATAGTCCATGTGTCCTTTGTACACTTCATATTCTACAACAGTAATCACTGGCATTTTTCTGTAACAGGTCTTCCATACACAATAAACCGTCAACTCATGAAATACTGTAACACTACCTCATGGTAGTTATCTGTCAAAAAGCTCAACTTAAAGGGGATGTCacccacttttcaacctcattttcatTATCTCCATTACAATACCAttgtctacatatgtgaaaaagtcccatttctatgttttgtagacaACAAATGTGAAGTTAAAAAGATATACCAAATGACATCATCAAGAAAATACCATCCCTCTGGCTAGAAACTCgttgcaggttttgaaaatcactgttttaaaaaaaacttttacgcctaccctgtgatgtcacagagaagcattttTTAAGGACCTTTCTTCTTATCTTTGTACCCACAGATCACAGACTAAACAACGTGTCGTTTTCACACATGTAGACACTGAtatggtgctggagataatgaatatgaggttgaaaagagGAGGAACTGCCCTTTAACAGAAGTCTGTGCAATGGTTTcgaagtgtgtgccctcagattGCATGACTGaaatgttattttgtgtgtgaAAGAAACATTATGAAAGACAACAAAatattttcaacaacaaaaaatatctaTGACCACTTTGAAAAAATGTACACGTTTAACCCTTTAATACCTCACACATGTCAACTGGTTGAGATTGGCCGAAAAATCTGAATTTGACCGGTGTAGACATGTTGTGTGCAACAAGCCTTTACGTGCATAAATCTGTGACAATTACAGAAGGCAAGCTGACCTGCAGAGCGGGCAGCCAAGGGTTAACTCCTGTCTTAATATCATTAACACCAGCTAGGATACTAGAATGTACTAGAGTATATTACCTGTGTAGTGGCTAGCGTTCAAAGTGTACCTTTACAATATGTCGTACTATTTGAAAGAATTCCCCATTTTCTTTCTTTCACATTGTAGTCGATTGCCATGTCTCCTGCTTGCTTCGCTGTTGaacttttgttgttttttacgaAATGTTCCGACAGTTTAAAGATTTCTGATTCTCCGTAAAGCATTTATTTCGTCTTCTACACATTCCATTCCCCCATCTGTCATGTAACATCAGCTCATACAACCAAGATGAAAATAGCTCTTAAAGATGTAGAATAAACAATATATACGTTCCGAACCAGAAGCCATGCCCAAAGATCTATACGCATGCTTTTATTCTTTTGACTTGAAGCACGGTTGTGGGTTCTGGAATGCCATGTTAATGCCTGTTTTGTTTCTCTTCTTTTTTTCTCTGCCTTTctttttttcgtttttttttttaagtctgaCGAGAATTGGAGGCTTGCAGGCGGACTGTCGTGCCTTCAGTGCCCATGTTAGTGTGAATGTTTGTATGTATAGACGCTGTATATAAATGCTGTATAAAAAAAACTCTCATTGCTTAAAAGCACAAGCACTTACAGTAGTTCAGACTTAATATATCAACAATAAAGATGttcctctcttttttttctgagCGGGGGCTCCGCCTAAGGCGCCCTGAACCAAATAAAAATACCAATTAAAAAGCA
>XM_036956482.1
tcctctctcagccccttcctcctccccttcgGCCGTGACAGAGCACACCTGCTTGGTCTTGGCTGCGCGCGCTCTCAGTGCAATTATCGCTCGGCCCCTTGCAGCACAGTGCAGAAGGCTCACAGTGATTCAGCCTATAGCCCCAACTGGATATTTGGAAGGAAGACCATCTGACCTCGGCGCACTCTaactctctcgctcgctctcccacGATTCTAAAGAGCACAGGCTCCAGGACAAAGGCACCATGAGGTCAGCCTGTCTCTCCCTGCTCCTGGTCACAGCGTGCTGGTCACTTCCCTTCCGCCAGTCGGGCTTCCTGGACTTCATGATGGAGGATGAGGCGGGCTCTGGCTTGCCAGAGGTGCCCATCGAGCCCAGCGTGGACATCCCCACCATGCCCGAAGGACCCAAGTGCCCCTTCCGCTGCCAGTGCCACCTGCGCGTGGTGCAGTGCTCCGACTTAGGCCTGAAGAGTGTTCCAGATGAGATCCCTGCAGACAGCACCCTGCTGGACCTGCAGAACAACAAGATCACTGAGATCAAGGAGAATGACTTCAAGACTCTGAAGGGACTCCAAACCCTGATCCTGGTGAACAACCAGATCACCACAATCCACCCCAAGGCCTTCATTCCCCTGGGCAAGCTGCAGCGCCTCTACCTCTCCAAGAACCACCTCAAGGAAATGCCCGCCAACATGCCCAAGAGCCTGCAGGAGCTTCGCATCCACGAGAACAAGATCACTAAGATCAAGAAGGCCTCCTTCGAGGGCATGGCCCAGGTCATCGTCATGGAGCTCGGCTCCAACCCCCTGAAGAGTGCAGGGGTTGAGGCTGGGGCGTTCGGGGCCCTGAAGAAGGTCTCATACATCCGCATTGCAGacaccaacctgacagagatccCCAAAGgtctgccctcctccctctccgaGCTCCACCTGGACAGCAACAAGATCACCAAGGTGCAGGCGGACAACCTGAAGGGCCTCAAGAACCTGGCTAAGCTGGGACTAAGCTACAATGAGATCAGCCAGGTGGAGAACGGTTCTCTGGCCATGGTTCCTCACCTCAGAGAGCTTCACCTGGACAACAATGCCCTGACCACCGTGCCTGCAGGCCTGCCTGACCACAAGTACATCCAGGTGATCTACCTCCACAGCAACAAGATAGGGGTGGTGGGAACCCAGGACTTCTGCCCACCAGGCTACAATACCAAGAAGGCCATGTACTCTGGCATCAGCCTGTTCTCCAACCCCGTCCCTTACTGGGAGGTGCAGCCCATCACCTTCCGCTGTGTGTTCGACCGCTCTGCCATCCAGCTGGGCAACTACAGGAAGAAGTAGAGAAAAAGTAGACCacccccagagagagggagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaccgcAGCCCCCCATCTACCCCACAACACTGATCGGCAACTTTATCCCCATTTTAAAACCATAACGAACATCCAATACAGTTTTAACAGTTACAGTACATAATGTTTTCATGAGCAAAGACAGAACAGTTACAAAACTCAGTACCAAACCTTCCATAGATGGCTTAGTGATAACTCAAACCAGCTCTGTATGCAAACAGTTCATTTATTATAGTCCATGTGTCCTTTGTACACTTCATATTCTACAACAGTAATCACTGGCATTTTTCTGTAACAGGTCTTCCATACACAATAAACCGTCAACTCATGAAATACTGTAACACTACCTCATGGTAGTTATCTGTCAAAAAGCTCAACTTAAAGGGGATGTCacccacttttcaacctcattttcatTATCTCCATTACAATACCAttgtctacatatgtgaaaaagtcccatttctatgttttgtagacaACAAATGTGAAGTTAAAAAGATATACCAAATGACATCATCAAGAAAATACCATCCCTCTGGCTAGAAACTCgttgcaggttttgaaaatcactgttttaaaaaaaacttttacgcctaccctgtgatgtcacagagaagcattttTTAAGGACCTTTCTTCTTATCTTTGTACCCACAGATCACAGACTAAACAACGTGTCGTTTTCACACATGTAGACACTGAtatggtgctggagataatgaatatgaggttgaaaagagGAGGAACTGCCCTTTAACAGAAGTCTGTGCAATGGTTTcgaagtgtgtgccctcagattGCATGACTGaaatgttattttgtgtgtgaAAGAAACATTATGAAAGACAACAAAatattttcaacaacaaaaaatatctaTGACCACTTTGAAAAAATGTACACGTTTAACCCTTTAATACCTCACACATGTCAACTGGTTGAGATTGGCCGAAAAATCTGAATTTGACCGGTGTAGACATGTTGTGTGCAACAAGCCTTTACGTGCATAAATCTGTGACAATTACAGAAGGCAAGCTGACCTGCAGAGCGGGCAGCCAAGGGTTAACTCCTGTCTTAATATCATTAACACCAGCTAGGATACTAGAATGTACTAGAGTATATTACCTGTGTAGTGGCTAGCGTTCAAAGTGTACCTTTACAATATGTCGTACTATTTGAAAGAATTCCCCATTTTCTTTCTTTCACATTGTAGTCGATTGCCATGTCTCCTGCTTGCTTCGCTGTTGaacttttgttgttttttacgaAATGTTCCGACAGTTTAAAGATTTCTGATTCTCCGTAAAGCATTTATTTCGTCTTCTACACATTCCATTCCCCCATCTGTCATGTAACATCAGCTCATACAACCAAGATGAAAATAGCTCTTAAAGATGTAGAATAAACAATATATACGTTCCGAACCAGAAGCCATGCCCAAAGATCTATACGCATGCTTTTATTCTTTTGACTTGAAGCACGGTTGTGGGTTCTGGAATGCCATGTTAATGCCTGTTTTGTTTCTCTTCTTTTTTTCTCTGCCTTTctttttttcgtttttttttttaagtctgaCGAGAATTGGAGGCTTGCAGGCGGACTGTCGTGCCTTCAGTGCCCATGTTAGTGTGAATGTTTGTATGTATAGACGCTGTATATAAATGCTGTATAAAAAAAACTCTCATTGCTTAAAAGCACAAGCACTTACAGTAGTTCAGACTTAATATATCAACAATAAAGATGttcctctcttttttttctgagCGGGGGCTCCGCCTAAGGCGCCCTGAACCAAATAAAAATACCAATTAAAAAGCA
>NM_001160486.1
ATGAGGTCAGCCTGTCTCTCCCTGCTCCTGGTCACAGCGTGCTGGTCACTTCCCTTCCGCCAGTCGGGCTTCCTGGACTTCATGATGGAGGATGAGGCGGGCTCTGGCTTGCCAGAGGTGCCCATCGAGCCCAGCGTGGACATCCCCACCATGCCCGAAGGACCCAAGTGCCCCTTCCGCTGCCAGTGCCACCTGCGCGTGGTGCAGTGCTCCGACTTAGGCCTGAAGAGTGTTCCAGATGAGATCCCTGCAGACAGCACCCTGCTGGACCTGCAGAACAACAAGATCACTGAGATCAAGGAGAATGACTTCAAGACTCTGAAGGGACTCCAAACCCTGATCCTGGTGAACAACCAGATCACCACAATCCACCCCAAGGCCTTCATTCCCCTGGGCAAGCTGCAGCGCCTCTACCTCTCCAAGAACCACCTCAAGGAAATGCCCGCCAACATGCCCAAGAGCCTGCAGGAGCTTCGCATCCACGAGAACAAGATCACTAAGATCAAGAAGGCCTCCTTCGAGGGCATGGCCCAGGTCATCGTCATGGAGCTCGGCTCCAACCCCCTGAAGAGTGCAGGGGTTGAGGCTGGGGCGTTCGGGGCCCTGAAGAAGGTCTCATACATCCGCATTGCAGacaccaacctgacagagatccCCAAAGgtctgccctcctccctctccgaGCTCCACCTGGACAGCAACAAGATCACCAAGGTGCAGGCGGACAACCTGAAGGGCCTCAAGAACCTGGCTAAGCTGGGACTAAGCTACAATGAGATCAGCCAGGTGGAGAACGGTTCTCTGGCCATGGTTCCTCACCTCAGAGAGCTTCACCTGGACAACAATGCCCTGACCACCGTGCCTGCAGGCCTGCCTGACCACAAGTACATCCAGGTGATCTACCTCCACAGCAACAAGATAGGGGTGGTGGGAACCCAGGACTTCTGCCCACCAGGCTACAATACCAAGAAGGCCATGTACTCTGGCATCAGCCTGTTCTCCAACCCCGTCCCTTACTGGGAGGTGCAGCCCATCACCTTCCGCTGTGTGTTCGACCGCTCTGCCATCCAGCTGGGCAACTACAGGAAGAAGTAG

Function

NR:

description
decorin precursor

GO:

id name namespace
GO:0005518 collagen binding molecular_function

KEGG:

id description
K04660 DCN; decorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956481.1 False 3346 mRNA 0.47 9 18567868 18596759
XM_036956482.1 False 3250 mRNA 0.46 8 18567871 18596759
NM_001160486.1 True 1095 mRNA 0.58 7 18577565 18594851

Neighbor

gene id symbol gene type direction distance location
LOC110499888 LOC106609036 coding upstream 51835 18511675 ~ 18516033 (+)
LOC110499881 LOC106576460 coding upstream 193238 18366267 ~ 18374630 (+)
LOC110499882 LOC106576502 coding upstream 277669 18270787 ~ 18290199 (+)
si:dkey-159a18.1 LOC106609576 coding upstream 299177 18247128 ~ 18268691 (+)
LOC110499885 NA coding upstream 323093 18243094 ~ 18244775 (+)
LOC110499892 lum coding downstream 16924 18613683 ~ 18617804 (+)
LOC110499893 LOC106576462 coding downstream 24418 18621177 ~ 18628411 (+)
LOC110499894 LOC106609040 coding downstream 33884 18630643 ~ 18654262 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 75154 18671875 ~ 18683306 (+)
fut9 fut9 coding downstream 122549 18719308 ~ 18720592 (+)
G1713233 NA non-coding upstream 49500 18517739 ~ 18518368 (+)
G1713287 NA non-coding upstream 63548 18502266 ~ 18504320 (+)
G1713285 NA non-coding upstream 75855 18491635 ~ 18492013 (+)
G1713282 NA non-coding upstream 80374 18487285 ~ 18487494 (+)
G1713281 NA non-coding upstream 80646 18486931 ~ 18487222 (+)
G1713332 NA non-coding downstream 15628 18612387 ~ 18612629 (+)
G1713351 NA non-coding downstream 63596 18660355 ~ 18660684 (+)
G1713352 NA non-coding downstream 66413 18663172 ~ 18663507 (+)
G1713331 NA non-coding downstream 72212 18668971 ~ 18669328 (+)
G1713262 NA other upstream 66994 18497147 ~ 18500874 (+)
G1712658 NA other upstream 899282 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1624079 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1826650 16740369 ~ 16742407 (+)
G1713384 NA other downstream 138032 18734791 ~ 18737436 (+)
G1714090 NA other downstream 788213 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1512439 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1961663 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2401839 20954576 ~ 21004439 (+)

Expression


Co-expression Network