LOC110499892 (lum)


Basic Information

Item Value
gene id LOC110499892
gene name lum
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18613683 ~ 18617804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576949.2
ATATATATGATGCCATGTGTCCTTTGTGATACTTCGCATCCTCATTCACGCATGAGGCGGACCTCGCATCCCAGACTGCACTGGTGCACCTGTGACTGGTTAGGCAGAGCCCGTAATGCTCAGATTCCATGCCTTAAAAACTCATGTCGATGTCATCGTCTTTATATACTACAGTGTGACTCCAGTTTGGGCAGCTGCCTTCTGTCAATCCGGGAGCACAGTCATCTGAAGAACCAGAAGCTTTCCCAcccctttccctcgctctctctttctctcactctctttatctccccctccctctccccttctccctcgttctcctccctctctccagagaCATCTGGCTTTTGAGCAACCACAGTCTTCTTACCTGCTGACCTTCTATCCcacacgcagagggagagagagagagagaggagagaaagTTATGTTTCCCCTCCGTGTCCCCATCTTTGCCGTGCTGGTCAGCCTGACCGTGGGCCAGTACGATGACTACGACTACCAGCCGGCCTCCCAGTATGGCCCGTCCAGCGGCAACTGTGCCCAGGAATGCGAGTGCCCCATCAACTTCCCCACTGCCATGTACTGTGACTCCCGCAACCTTAAGTTTGTGCCCATTGTGCCCTCAGGCATCAAGTACCTGTACCTGCAGAACAACCTGATCGAGGAGATCAAGGCTGGGGTCTTCGACAATGTCACGGCTGAACTCCGTTGGCTGGTCCTGGACCATAACCAGATCACCAATGAGAAGGTGGCCAAGGGAACCATCGACAAGCTGACCGGACTTCATAAGATCTTGTTCAGCTTCAACAAACTGACGGAAGCTGTGATCCCTCCCTCCAAGTCCTTGGACGAGCTGAAGATGATGAACAACCAGCTGTCCAAGTTCCCTGCAGGGAGTCTGGCCGGCATGCAGAACCTGACCTCGGTCCACCTCCAGAACAACGAGCTGACCTCTAAAGCTCTTAACGGGGTCTTCAAGGGCCTCAACAAGCTGGTGGCCATAGACTTGACCCACAACAAGCTGAAGAAGCTGCCCTCAGGCATGCCCAGTTCGCTGGAGACCTTCTATGGCGATCACAATGACATCAGCAGCATTGCCGCCGGGGACCTCAAAGAGCTGCCCAAGCTGGCGTACCTGAGGTTGGCCTACAATCAGATGACGGATGCAGGGATTCCGGCGGGCGTGTTCAATGTGACAAGCCTGATCGAGCTGGATCTGTCCTACAACAAGCTGCAGTCCATCCCTGAGATCAACGAACAGCTGGAGCATCTCTATCTGCAGGCCAACGAAATCAACAAGTTCAACCTGGAGAATATTTGCAAGTTCTCTGGCCCTCTGAACTACTCCAGACTGAAGCACCTGCGTCTGGATGGGAACAACATTACACATGCCAACCTACCCCATGACTCCTCCAACTGCCTGCGCCAAGCCTCTGACATCATCTTCGACTAAGGACCCTCCCCTCATCCGCAAGACTCCCTCTGTGACCCTCCCCCGGCACCACGACCCACCCTAAACTAATCCTTCAAACCCCAATAGGCACAATGTGGTTATATTCCAATATCTACAATAGCATTCTACTCagagtatatggccaatatgttTCTTTATTCTAAGTGGAATGCTAGTGTGGATAATGAACCCGAGCGACAGTGTTTGCAACAACCCTAAATACGTATCCTCCCCCTACCGGCGAAATCGAGGTCACCTCTGTCAACTCATCGGTAGTCCTTTCTGTAAACacagactatgaaataacaaaccAACAAAGGTTAGAAACCCCGGAGAGACCTTTTATTTTGCAGTGCATCATGGTATTCTCATGACAACTATAGAGTATATTGTCCGTAGCAAATGGCTGGCTCTGTACCAATAGTTTTGTCCAAATTTGCTGCAAATCAAACAATCGGCTGCAATATAATGTAATGGTGCCTCGTAAAAAGCACTTGAACTGTACTTGTCTGTACTTGTTTCAAACAATAGGTGCCTTTTCTTGTGAAAAAGAGACAATATAGGAACATAGGGATTCCTGAATGAAGTGCTTTTAATGAAAATGCAGCTCACACACTTCAAACATTCCAAAAGTAGTGGCACATGTTGTTTTCAGACAAGTACATTGAGGAATATGGGAATAAATGTCACTTGCAAATAAATGCATTGCCCATTCCTCTTTTGTATGTTTGtcatgatgtttttttaaaggtttCTTGTATTTAGTCAGTACACTCCCAGAATCACATTGCTGTGCAAAAGACCTGCAGGTAAGGAATAAAAGTATCTAAGAGATCTGTGTTGTGTACTCTGGTATAATGTCTACTGGGGAAACACTGAACAGTGGAACACTTTTGGAACCAAATTAAAACTCATATGTCATATGTCAAAAGCTGTGGCATATTCCCCACCTTTCTGTATGAATGTTGGGGGGAAAGTTATTAACCATCCTTATCGACAAGATTAAAAGGCTTGACACTGAATAGCTCTGCTGAAGTAATTTACTGTTTTTTTTAATGAGTTATCATGTAGTTAAATAAGAGTCAATCGCCCGTTCATTGCAGATCACCGTTGTTGTGCCGACATTTATACAACATTTGCATTGCTTGCATGCATCTCATGGTAACTCTGTATGATAATAAAAGCTAGCATtttacattttttgtccattcatGGTTACCTTGTTTGCCATGTGTGCTTTTGCCCGTATAGCTTTATCAGAATAACAACAGTTTGTTGTGACGCTAACTTTATCTTGCTCTGTTGTGGCAACGTTGGTGGAATGTCATGTGCTATTTGGGCAGAGTATATCCCGATTTATTTTCATTATGGCTTTTGACTCAGTAATCGCTGGTGAATTTACTGTGAGGACATAACATACATTTGAATAAACTACATTTCCAATA
>XM_021576948.2
TGATACTTCGCATCCTCATTCACGCATGAGGCGGACCTCGCATCCCAGACTGCACTGGTGCACCTGTGACTGGTTAGGCAGAGCCCGTAATGCTCAGATTCCATGCCTTAAAAACTCATGTCGATGTCATCGTCTTTATATACTACAGTGTGACTCCAGTTTGGGCAGCTGCCTTCTGTCAATCCGGGAGCACAGTCATCTGAAGAACCAGAAGCTTTCCCAcccctttccctcgctctctctttctctcactctctttatctccccctccctctccccttctccctcgttctcctccctctctccagagaCATCTGGCTTTTGAGCAACCACAGTCTTCTTACCTGCTGACCTTCTATCCcacacgcagagggagagagagagagagaggagagaaagTACAGTTATGTTTCCCCTCCGTGTCCCCATCTTTGCCGTGCTGGTCAGCCTGACCGTGGGCCAGTACGATGACTACGACTACCAGCCGGCCTCCCAGTATGGCCCGTCCAGCGGCAACTGTGCCCAGGAATGCGAGTGCCCCATCAACTTCCCCACTGCCATGTACTGTGACTCCCGCAACCTTAAGTTTGTGCCCATTGTGCCCTCAGGCATCAAGTACCTGTACCTGCAGAACAACCTGATCGAGGAGATCAAGGCTGGGGTCTTCGACAATGTCACGGCTGAACTCCGTTGGCTGGTCCTGGACCATAACCAGATCACCAATGAGAAGGTGGCCAAGGGAACCATCGACAAGCTGACCGGACTTCATAAGATCTTGTTCAGCTTCAACAAACTGACGGAAGCTGTGATCCCTCCCTCCAAGTCCTTGGACGAGCTGAAGATGATGAACAACCAGCTGTCCAAGTTCCCTGCAGGGAGTCTGGCCGGCATGCAGAACCTGACCTCGGTCCACCTCCAGAACAACGAGCTGACCTCTAAAGCTCTTAACGGGGTCTTCAAGGGCCTCAACAAGCTGGTGGCCATAGACTTGACCCACAACAAGCTGAAGAAGCTGCCCTCAGGCATGCCCAGTTCGCTGGAGACCTTCTATGGCGATCACAATGACATCAGCAGCATTGCCGCCGGGGACCTCAAAGAGCTGCCCAAGCTGGCGTACCTGAGGTTGGCCTACAATCAGATGACGGATGCAGGGATTCCGGCGGGCGTGTTCAATGTGACAAGCCTGATCGAGCTGGATCTGTCCTACAACAAGCTGCAGTCCATCCCTGAGATCAACGAACAGCTGGAGCATCTCTATCTGCAGGCCAACGAAATCAACAAGTTCAACCTGGAGAATATTTGCAAGTTCTCTGGCCCTCTGAACTACTCCAGACTGAAGCACCTGCGTCTGGATGGGAACAACATTACACATGCCAACCTACCCCATGACTCCTCCAACTGCCTGCGCCAAGCCTCTGACATCATCTTCGACTAAGGACCCTCCCCTCATCCGCAAGACTCCCTCTGTGACCCTCCCCCGGCACCACGACCCACCCTAAACTAATCCTTCAAACCCCAATAGGCACAATGTGGTTATATTCCAATATCTACAATAGCATTCTACTCagagtatatggccaatatgttTCTTTATTCTAAGTGGAATGCTAGTGTGGATAATGAACCCGAGCGACAGTGTTTGCAACAACCCTAAATACGTATCCTCCCCCTACCGGCGAAATCGAGGTCACCTCTGTCAACTCATCGGTAGTCCTTTCTGTAAACacagactatgaaataacaaaccAACAAAGGTTAGAAACCCCGGAGAGACCTTTTATTTTGCAGTGCATCATGGTATTCTCATGACAACTATAGAGTATATTGTCCGTAGCAAATGGCTGGCTCTGTACCAATAGTTTTGTCCAAATTTGCTGCAAATCAAACAATCGGCTGCAATATAATGTAATGGTGCCTCGTAAAAAGCACTTGAACTGTACTTGTCTGTACTTGTTTCAAACAATAGGTGCCTTTTCTTGTGAAAAAGAGACAATATAGGAACATAGGGATTCCTGAATGAAGTGCTTTTAATGAAAATGCAGCTCACACACTTCAAACATTCCAAAAGTAGTGGCACATGTTGTTTTCAGACAAGTACATTGAGGAATATGGGAATAAATGTCACTTGCAAATAAATGCATTGCCCATTCCTCTTTTGTATGTTTGtcatgatgtttttttaaaggtttCTTGTATTTAGTCAGTACACTCCCAGAATCACATTGCTGTGCAAAAGACCTGCAGGTAAGGAATAAAAGTATCTAAGAGATCTGTGTTGTGTACTCTGGTATAATGTCTACTGGGGAAACACTGAACAGTGGAACACTTTTGGAACCAAATTAAAACTCATATGTCATATGTCAAAAGCTGTGGCATATTCCCCACCTTTCTGTATGAATGTTGGGGGGAAAGTTATTAACCATCCTTATCGACAAGATTAAAAGGCTTGACACTGAATAGCTCTGCTGAAGTAATTTACTGTTTTTTTTAATGAGTTATCATGTAGTTAAATAAGAGTCAATCGCCCGTTCATTGCAGATCACCGTTGTTGTGCCGACATTTATACAACATTTGCATTGCTTGCATGCATCTCATGGTAACTCTGTATGATAATAAAAGCTAGCATtttacattttttgtccattcatGGTTACCTTGTTTGCCATGTGTGCTTTTGCCCGTATAGCTTTATCAGAATAACAACAGTTTGTTGTGACGCTAACTTTATCTTGCTCTGTTGTGGCAACGTTGGTGGAATGTCATGTGCTATTTGGGCAGAGTATATCCCGATTTATTTTCATTATGGCTTTTGACTCAGTAATCGCTGGTGAATTTACTGTGAGGACATAACATACATTTGAATAAACTACATTTCCAATA

Function

symbol description
lum Acts upstream of or within collagen fibril organization and embryonic camera-type eye morphogenesis. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; epidermis; head mesenchyme; heart; and nervous system. Human ortholog(s) of this gene implicated in carotid artery disease; coronary artery disease; and pancreatic cancer. Orthologous to human LUM (lumican).

NR:

description
lumican-like

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process

KEGG:

id description
K08122 LUM; lumican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576949.2 False 2901 mRNA 0.46 3 18613683 18617804
XM_021576948.2 True 2880 mRNA 0.46 3 18613709 18617804

Neighbor

gene id symbol gene type direction distance location
LOC100301653 LOC100301653 coding upstream 16924 18567868 ~ 18596759 (+)
LOC110499888 LOC106609036 coding upstream 97650 18511675 ~ 18516033 (+)
LOC110499881 LOC106576460 coding upstream 239053 18366267 ~ 18374630 (+)
LOC110499882 LOC106576502 coding upstream 323484 18270787 ~ 18290199 (+)
si:dkey-159a18.1 LOC106609576 coding upstream 344992 18247128 ~ 18268691 (+)
LOC110499893 LOC106576462 coding downstream 3373 18621177 ~ 18628411 (+)
LOC110499894 LOC106609040 coding downstream 12839 18630643 ~ 18654262 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 54109 18671875 ~ 18683306 (+)
fut9 fut9 coding downstream 101504 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 108893 18726697 ~ 18734052 (+)
G1713332 NA non-coding upstream 1054 18612387 ~ 18612629 (+)
G1713324 NA non-coding upstream 27016 18586072 ~ 18586667 (+)
G1713233 NA non-coding upstream 95315 18517739 ~ 18518368 (+)
G1713287 NA non-coding upstream 109363 18502266 ~ 18504320 (+)
G1713285 NA non-coding upstream 121670 18491635 ~ 18492013 (+)
G1713351 NA non-coding downstream 42551 18660355 ~ 18660684 (+)
G1713352 NA non-coding downstream 45368 18663172 ~ 18663507 (+)
G1713331 NA non-coding downstream 51167 18668971 ~ 18669328 (+)
G1713343 scyl2 non-coding downstream 65604 18683408 ~ 18686424 (+)
G1713262 NA other upstream 112809 18497147 ~ 18500874 (+)
G1712658 NA other upstream 945097 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1669894 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1872465 16740369 ~ 16742407 (+)
G1713384 NA other downstream 116987 18734791 ~ 18737436 (+)
G1714090 NA other downstream 767168 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1491394 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1940618 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2380794 20954576 ~ 21004439 (+)

Expression


Co-expression Network