LOC110499893 (LOC106576462)



Basic Information


Item Value
gene id LOC110499893
gene name LOC106576462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18621177 ~ 18628411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036957151.1
cctctctctgctccaccagTGGATGTCAAAGGGAGCAACTGAGACTGTTAGAGCACTGTGGACCAGCACCAGAGAagagtactggaggaccagacaACCACTACTACCCCTGAGCCAAGCATCACCTGGCCATACACTACCAACAAACACCGTTTGGAGAAGCAGGCTGAGTGTTAAGATGGCGCTTCTCCTGGCCTTTTCCTCCGTCCTCCTTCTGGTCGGTCCCGCTCTGGCCCAGAGCCCTGACATGTCCTACGGCGACTATATGGCCCAGTTACAGGCCTGTCCCAAAGAGTGCCGCTGCCCGCCCAGCTTCCCCAACGCCGTTTACTGCGACAACAAGGCTCTGAAGCGCATCCCCACCATCCCCCCACACACCTGGTATCTCTACCTGCAGAACAACCTCATCGACGTACTGTCAACAGATGCTCTCCGCAACGCCACGCAGCTGCGCTGGATCAACCTCAACCGCAACCGCATCACCAGCGAGGGCATGGAGGAGGGTGCCTTGGCCGCCATGCTCCGCCTGGTCCACCTCTACATGGACGACAACCTGCTGAGCTCCGTCCCAGCCAACTTGCCCTCCAGCCTGGAGCAGCTGCGCCTCTCCCGCAACCGCATCTCCAAGATCCCCGCCGGGGTGTTCTCAGGTCTGGATCGGATGACACTGCTGGAACTGCAGGGGAACAAGCTCCAGGATGACGCAGTGACCGAGGTGAGCCTCAAGGGCCTGAGCAACCTGGTCCAGATCAACCTGGCCAAGAACCAGCTTACCACCATGCCCCTGGGCCTCCCCATCACCATCACCCAGCTCTTCCTGGACAACAACGCCATTGAGAAGATCCCCGCTGACTACTTCAAGGGTCTACCCAAGGTGGCCTTCCTCAGGCTCAACCGCAACAAGCTGGGAAACGGCGGGCTGCCCAAGAACGTGTTCAACATGTCCAGCATCCTGGACCTGCAGTTGTCCCATAACCAGCTAACTCAGGTTCCTATGATCCCCTCAGGCCTGGAACACCTCCACCTGGACCACAACCAGATTAAGAGTGTGAATGGATCTGATATCTGCCCTGTGTCGGCTGATGCTCTGGAGGGCTATGTCACTGAGACCGCTCCTAAACTCCGCTACCTCCGTCTCGATGGCAATGAGGTCAAGCCACCAATACCCAGAGACCTCATGATGTGCTTCCGTCTCCTCAGGTCCATCGTCATATAAGAAACACACTTCCACCAGCCAATCGCATCTAGTTATAGTCTCCCGGATCCAAGGGCAGATGATTACTAATGAATGGAAGTGACTATGCTAATCTATATGGATTTTTGATCTGTGGACTACACATTTGCATACTTATGTTGAGAACTACATATTAGACGTCAGGGTCGGGGTCAAACCAAACTCTGTCAATTTAAGAATTAATGCAATGAATTGGTCAATAGAAAATAATGGGCCATTTTCAGTTGTTGAATTGAGTCTCCTGAATTGGTAGAATGGGAATGGAATTGACCTCAACCTTGTTGGGTGAAGGTCACCTGACAATCTGTAGATAGTGTGATTGGACTGCACTACTGTCTTTTGACCACTAGTTGTGCCTTATGTTCGTCCTGTAGTCACAAGTGCTTAATGCAACAGTGCAGTATGTCTGAGTTGCTGAATGTGCTGTTTCAATACAGCACACATTGATCTGAAAGTGGTAGAAAAccttgaaattgtgtttttccaAAAAAGACAATAATTTACTATGGCAATGTGATTGGGACAAGATAAGAGGAATAATGTTTATAACCGTATGTATTTAAGGCATGTTGAATCTTCTGATGACTCATTGTCCCCATTCTCTTTATTTGAATGGAAGATCATCTTTTGTGAATACCAAAATAATACTTTTTAAACATTGTATACTGCTCCTCTCTGACAGAATAACTTGAATTGATGATATCAGACTTGAAACCAAATGAAAtgcaaattattttattttcaagttcTCTGTGAATATGAATATGTTGAGCTAACTTTAGACACATGCTATTCCACACAAACATGCAATTGTTTGCTCTTTTAAAACATTTAGCTCATTTATTTAATTGTCTGTTTTTCACTGAATTCACTGAGTTCTTGATCACTGTCTCAAATGTGAAGTTCCATTTTGTACTCAATGGGTCAACCTATTTGCAGTCATACGTATTTCGGAAATACCAAAGCAATTTTGGAATGCTTACATTTTGTTAAGTTGTGAATTCCttatacagtcaataatataaataaaacatttttctgGAAAAACA
>XM_021576950.2
TGAGTTGTTCCATTCAGACATCGCTGCCTGATTAGCGCTAAGTACATTAGAGATCTCAGCAGAACATTTACCTGAAGGACATAAACAGAGAGATGGTGCCAAATGCCAACTATGGGAGAACGGGGAGTGGACAGAAGGGTTAGGGTGGTTTCATAGTGAGTTATAGGCCCGTATTAGCCTGATTTTGAAGTGGGCCAAGTCTCACGGCCTCAGCTACCACACCTTCGCAGGCTTAACAGGGAAAAAATCACCACATGGATTATGACCTCTGATTACAGGCCTCTGATTGGCCGAGAGGAACTACAGTGTGACTGTCAATGAAGGGTTCCCACCAACTGAATGAAGACACCGATGGTACAAATACAGGGGAGGTGAGCGGTGTTTCTCTGAGTTTGGGACTACAGTTGCTACCACATTTCTTGAGCAAGGCAGAAACAGGGCGCAAAGACAGACTTTGGAAAATCACTTGAACTCAAAGGCTGAGTGTTAAGATGGCGCTTCTCCTGGCCTTTTCCTCCGTCCTCCTTCTGGTCGGTCCCGCTCTGGCCCAGAGCCCTGACATGTCCTACGGCGACTATATGGCCCAGTTACAGGCCTGTCCCAAAGAGTGCCGCTGCCCGCCCAGCTTCCCCAACGCCGTTTACTGCGACAACAAGGCTCTGAAGCGCATCCCCACCATCCCCCCACACACCTGGTATCTCTACCTGCAGAACAACCTCATCGACGTACTGTCAACAGATGCTCTCCGCAACGCCACGCAGCTGCGCTGGATCAACCTCAACCGCAACCGCATCACCAGCGAGGGCATGGAGGAGGGTGCCTTGGCCGCCATGCTCCGCCTGGTCCACCTCTACATGGACGACAACCTGCTGAGCTCCGTCCCAGCCAACTTGCCCTCCAGCCTGGAGCAGCTGCGCCTCTCCCGCAACCGCATCTCCAAGATCCCCGCCGGGGTGTTCTCAGGTCTGGATCGGATGACACTGCTGGAACTGCAGGGGAACAAGCTCCAGGATGACGCAGTGACCGAGGTGAGCCTCAAGGGCCTGAGCAACCTGGTCCAGATCAACCTGGCCAAGAACCAGCTTACCACCATGCCCCTGGGCCTCCCCATCACCATCACCCAGCTCTTCCTGGACAACAACGCCATTGAGAAGATCCCCGCTGACTACTTCAAGGGTCTACCCAAGGTGGCCTTCCTCAGGCTCAACCGCAACAAGCTGGGAAACGGCGGGCTGCCCAAGAACGTGTTCAACATGTCCAGCATCCTGGACCTGCAGTTGTCCCATAACCAGCTAACTCAGGTTCCTATGATCCCCTCAGGCCTGGAACACCTCCACCTGGACCACAACCAGATTAAGAGTGTGAATGGATCTGATATCTGCCCTGTGTCGGCTGATGCTCTGGAGGGCTATGTCACTGAGACCGCTCCTAAACTCCGCTACCTCCGTCTCGATGGCAATGAGGTCAAGCCACCAATACCCAGAGACCTCATGATGTGCTTCCGTCTCCTCAGGTCCATCGTCATATAAGAAACACACTTCCACCAGCCAATCGCATCTAGTTATAGTCTCCCGGATCCAAGGGCAGATGATTACTAATGAATGGAAGTGACTATGCTAATCTATATGGATTTTTGATCTGTGGACTACACATTTGCATACTTATGTTGAGAACTACATATTAGACGTCAGGGTCGGGGTCAAACCAAACTCTGTCAATTTAAGAATTAATGCAATGAATTGGTCAATAGAAAATAATGGGCCATTTTCAGTTGTTGAATTGAGTCTCCTGAATTGGTAGAATGGGAATGGAATTGACCTCAACCTTGTTGGGTGAAGGTCACCTGACAATCTGTAGATAGTGTGATTGGACTGCACTACTGTCTTTTGACCACTAGTTGTGCCTTATGTTCGTCCTGTAGTCACAAGTGCTTAATGCAACAGTGCAGTATGTCTGAGTTGCTGAATGTGCTGTTTCAATACAGCACACATTGATCTGAAAGTGGTAGAAAAccttgaaattgtgtttttccaAAAAAGACAATAATTTACTATGGCAATGTGATTGGGACAAGATAAGAGGAATAATGTTTATAACCGTATGTATTTAAGGCATGTTGAATCTTCTGATGACTCATTGTCCCCATTCTCTTTATTTGAATGGAAGATCATCTTTTGTGAATACCAAAATAATACTTTTTAAACATTGTATACTGCTCCTCTCTGACAGAATAACTTGAATTGATGATATCAGACTTGAAACCAAATGAAAtgcaaattattttattttcaagttcTCTGTGAATATGAATATGTTGAGCTAACTTTAGACACATGCTATTCCACACAAACATGCAATTGTTTGCTCTTTTAAAACATTTAGCTCATTTATTTAATTGTCTGTTTTTCACTGAATTCACTGAGTTCTTGATCACTGTCTCAAATGTGAAGTTCCATTTTGTACTCAATGGGTCAACCTATTTGCAGTCATACGTATTTCGGAAATACCAAAGCAATTTTGGAATGCTTACATTTTGTTAAGTTGTGAATTCCttatacagtcaataatataaataaaacatttttctgGAAAAACA

Function


NR:

description
keratocan-like

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
K08123 KERA; keratocan

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036957151.1 False 2283 mRNA 0.47 4 18621177 18628411
XM_021576950.2 True 2596 mRNA 0.47 3 18623969 18628411
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110499892 lum coding upstream 3373 18613683 ~ 18617804 (+)
LOC100301653 LOC100301653 coding upstream 24418 18567868 ~ 18596759 (+)
LOC110499888 LOC106609036 coding upstream 105144 18511675 ~ 18516033 (+)
LOC110499881 LOC106576460 coding upstream 246547 18366267 ~ 18374630 (+)
LOC110499882 LOC106576502 coding upstream 330978 18270787 ~ 18290199 (+)
LOC110499894 LOC106609040 coding downstream 2232 18630643 ~ 18654262 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 43502 18671875 ~ 18683306 (+)
fut9 fut9 coding downstream 90897 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 98286 18726697 ~ 18734052 (+)
LOC110499901 LOC106609586 coding downstream 111975 18740386 ~ 18754645 (+)
G1713332 NA non-coding upstream 8548 18612387 ~ 18612629 (+)
G1713324 NA non-coding upstream 34510 18586072 ~ 18586667 (+)
G1713233 NA non-coding upstream 102809 18517739 ~ 18518368 (+)
G1713287 NA non-coding upstream 116857 18502266 ~ 18504320 (+)
G1713285 NA non-coding upstream 129164 18491635 ~ 18492013 (+)
G1713351 NA non-coding downstream 31944 18660355 ~ 18660684 (+)
G1713352 NA non-coding downstream 34761 18663172 ~ 18663507 (+)
G1713331 NA non-coding downstream 40560 18668971 ~ 18669328 (+)
G1713343 scyl2 non-coding downstream 54997 18683408 ~ 18686424 (+)
G1713262 NA other upstream 120303 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 353669 18247128 ~ 18268691 (+)
G1712658 NA other upstream 952591 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1677388 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1879959 16740369 ~ 16742407 (+)
G1713384 NA other downstream 106380 18734791 ~ 18737436 (+)
G1714090 NA other downstream 756561 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1480787 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1930011 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2370187 20954576 ~ 21004439 (+)

Expression


LOC110499893(LOC106576462) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110499893(LOC106576462) Expression in each Bioproject

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LOC110499893(LOC106576462) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network