LOC110499894 (LOC106609040)


Basic Information

Item Value
gene id LOC110499894
gene name LOC106609040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18630643 ~ 18654262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957152.1
gtgtgaaaagtgTTCATGGTACGGGGTGGGTGCACAGCCCAAGTCCGAGTGACCAAAAGCTATCCACTCCCCTCCGATCGTTCTCAGTGCCTACCTTCTCACACGCAAGGTCCCCTAGCCCTCAGCATCTCCATCAAGGCTGAAGGGACCATTCAAGAAAACAGGAGACAGAGGTGGACTATGAGGATGTTGGAGGGGCTCATATTGGGACTCTTCGTCCTCAACGCAGTGGTGGCCAACCCCAGATTTGCCCGGCAGGTGGATTTCGACACGTATGACAGCGCCAACTATGATGTGGATCTAGAAAACTTGAATTTGGAGAATTCGAATGTCTTTGATTATGAAGATGGACTGACTATTGACGAACCTCAGATAGAGATTGGCACACTGGCCCCACCGGATTATAACTACCCTGGCCCTGGGGGCCCTGCATcactggaggaggaagaggaggaggagttgccCCTAACACCCCAGCTCATCCCCCAAGGCTCAGGGGGGTCTGGGGTACTCATGGGCCCCGACGCACAGGGAGAGGAGGAGCTGCGCCTGAGTCCCATTGACATTCTTCATATCTCCGGGGACTTTGGGGGTTCCACGGGTTCTGGAGGTTCCGGTGGCTCTGGGGTTTCCGGAGGTTCTGGGGGTTCTGGAGACCTTTTGGCTTCCGGTTCTGGGGACCTTTTGGCTTCTGGAGGCACAGGGGGTTCCAGGGAAATTGGTTCAGCAGGTTCTGGGGATCTTGGTTCTGGGGGTTCCAGGGTCCTTGGTTCCGGAGACTCTGTGGGTTCCGGAGACTCTGTGGGTTCCGGGGACCTTGGATTCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGTTCTGGACGCTCTGGGGGTTCTGGGGACCTTGGTTCTGGAGGCTCTGGGGGTTCCGGAGATCTTGGTTCCCGTGACTCTGGAGGATCCGGCACCCTCCTAGGCTCAGGGGGTTCCGGGGTCATATTGGGTTCCAGTACTGGGGGTTCTGGAGGTTCCGGGGACTCAGGAATAATAATTATATCTGGAGAGGAGGAGCTGCCCCTCATTCCTGACACTACCCCCCAGGAGGCATCGGGTGCTTCTGGGGAGTCTGGGGCCTCTGGCACCTCAGGGGCCTCAGGGCCTGGGGACTCCGACTCTGGTGGGTCAGAGGTCACATTAATCCCTGACCCTGAAGAGGAGGAAGTGCTCCTGACTACTCCGAAAACCCCTCAGGAGTCTGGAGGTACAGTAGGCTCAGGGGGCTCTGGGTTGCCAGAGGTTGACTTGGACATTAAAGgtATGCCTACCTGCCTGCTGTGCACCTGTCTGGGTGGTTCTGTCTACTGTGATGATGTGAAGCTGACGAGCGTGCCGCCTCTCCCCAAAGAGACCACTCACTTCTACGCCCGCTACAACCGCATCACCAAGATCAACAAGGGCGACTTTGCTCAGATGAACAAGCTGAAGAGGATCGACTTGACCGCCAACGAGATTGCATCCATCGCTGATGATGCATTCTCCGGCCTGCCCGTGCTGGAGGAGCTGGTGCTCCGTGAGAACGGCGTGTCACAGCTGCCTGCCCTTCCGCCCGTGATGACCCTCATCGACGCCAGCCACAACAACATTGGCGCCACAGGCATCCACAAAGAGGCTTTCAAGGACATGACGGGTCTGCTGTACCTGTACCTAACAGACAACCACATCGACCACATCCCTGTGCCCCTACCGGACAGCCTGCGCTCTCTGCACCTACAGCGCAACAACATTCAGATGATACACGAGGACACGTTCTGCAACCTGAAAGACTTCAACTACATCAGGAACGCACTGGAGGACATTCGCCTGGACGGCAACCCCATCAACCTCAGCAGGACCCCACAGGCCTATGTGTGTCTGCCCCGCGTCCCCATCGGAGCCCACATCTAACCACACACTGATCAATACACACGCATCTTTACACAGCTCAACTCATTGTCTACGAGACATATGTACATACCATACACACACTTACCTACTGGACAGATCCTAAAAGTTGTCCAGTCTATCAGTTCATTTGCAATCTGCACATACAGTAAACACCAGAACACTCTACCTACCTTCCCTAATTTAAGTCTGATCAGTTGTTAATCGCATACAtaacacacagtgagagagatgGTGCGTATCTCTcattcctacacacacacacacacaaatacacaccagaTATCTTTTTGTCAAAAGCCAAACTGTTCAGCAACTTGAAGCAAACAAAAAGACAATGAAAATGTGACATTTTATTGATCCAACAATCGAACATTGTTTCATGTCTGTTCCTGACTGGCAACGACAACCAGTAATATtgtttaaatatgtttttgtaaagGAAAAAAAATTATATTACAGAAATCTAAcactatttaaaaaaacaattataCTAGCATAAACTAATTGAAGCTTACTGGAACGCTAAATTGAATACCAATGCAATAAAAGAAGCAATTAAACAA
>XM_036957153.1
GGGGTTTGTGCAGTGCATGGACACGTTGGCTAATTGCTGATAGAGGTTTTgatattccatttttttattGCTTTGGGATTTGAACATCTATTCTTGGTTTGGATGTCTAGTGTCTGATCATATCaaGTGGACTATGAGGATGTTGGAGGGGCTCATATTGGGACTCTTCGTCCTCAACGCAGTGGTGGCCAACCCCAGATTTGCCCGGCAGGTGGATTTCGACACGTATGACAGCGCCAACTATGATGTGGATCTAGAAAACTTGAATTTGGAGAATTCGAATGTCTTTGATTATGAAGATGGACTGACTATTGACGAACCTCAGATAGAGATTGGCACACTGGCCCCACCGGATTATAACTACCCTGGCCCTGGGGGCCCTGCATcactggaggaggaagaggaggaggagttgccCCTAACACCCCAGCTCATCCCCCAAGGCTCAGGGGGGTCTGGGGTACTCATGGGCCCCGACGCACAGGGAGAGGAGGAGCTGCGCCTGAGTCCCATTGACATTCTTCATATCTCCGGGGACTTTGGGGGTTCCACGGGTTCTGGAGGTTCCGGTGGCTCTGGGGTTTCCGGAGGTTCTGGGGGTTCTGGAGACCTTTTGGCTTCCGGTTCTGGGGACCTTTTGGCTTCTGGAGGCACAGGGGGTTCCAGGGAAATTGGTTCAGCAGGTTCTGGGGATCTTGGTTCTGGGGGTTCCAGGGTCCTTGGTTCCGGAGACTCTGTGGGTTCCGGAGACTCTGTGGGTTCCGGGGACCTTGGATTCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGTTCTGGACGCTCTGGGGGTTCTGGGGACCTTGGTTCTGGAGGCTCTGGGGGTTCCGGAGATCTTGGTTCCCGTGACTCTGGAGGATCCGGCACCCTCCTAGGCTCAGGGGGTTCCGGGGTCATATTGGGTTCCAGTACTGGGGGTTCTGGAGGTTCCGGGGACTCAGGAATAATAATTATATCTGGAGAGGAGGAGCTGCCCCTCATTCCTGACACTACCCCCCAGGAGGCATCGGGTGCTTCTGGGGAGTCTGGGGCCTCTGGCACCTCAGGGGCCTCAGGGCCTGGGGACTCCGACTCTGGTGGGTCAGAGGTCACATTAATCCCTGACCCTGAAGAGGAGGAAGTGCTCCTGACTACTCCGAAAACCCCTCAGGAGTCTGGAGGTACAGTAGGCTCAGGGGGCTCTGGGTTGCCAGAGGTTGACTTGGACATTAAAGgtATGCCTACCTGCCTGCTGTGCACCTGTCTGGGTGGTTCTGTCTACTGTGATGATGTGAAGCTGACGAGCGTGCCGCCTCTCCCCAAAGAGACCACTCACTTCTACGCCCGCTACAACCGCATCACCAAGATCAACAAGGGCGACTTTGCTCAGATGAACAAGCTGAAGAGGATCGACTTGACCGCCAACGAGATTGCATCCATCGCTGATGATGCATTCTCCGGCCTGCCCGTGCTGGAGGAGCTGGTGCTCCGTGAGAACGGCGTGTCACAGCTGCCTGCCCTTCCGCCCGTGATGACCCTCATCGACGCCAGCCACAACAACATTGGCGCCACAGGCATCCACAAAGAGGCTTTCAAGGACATGACGGGTCTGCTGTACCTGTACCTAACAGACAACCACATCGACCACATCCCTGTGCCCCTACCGGACAGCCTGCGCTCTCTGCACCTACAGCGCAACAACATTCAGATGATACACGAGGACACGTTCTGCAACCTGAAAGACTTCAACTACATCAGGAACGCACTGGAGGACATTCGCCTGGACGGCAACCCCATCAACCTCAGCAGGACCCCACAGGCCTATGTGTGTCTGCCCCGCGTCCCCATCGGAGCCCACATCTAACCACACACTGATCAATACACACGCATCTTTACACAGCTCAACTCATTGTCTACGAGACATATGTACATACCATACACACACTTACCTACTGGACAGATCCTAAAAGTTGTCCAGTCTATCAGTTCATTTGCAATCTGCACATACAGTAAACACCAGAACACTCTACCTACCTTCCCTAATTTAAGTCTGATCAGTTGTTAATCGCATACAtaacacacagtgagagagatgGTGCGTATCTCTcattcctacacacacacacacacaaatacacaccagaTATCTTTTTGTCAAAAGCCAAACTGTTCAGCAACTTGAAGCAAACAAAAAGACAATGAAAATGTGACATTTTATTGATCCAACAATCGAACATTGTTTCATGTCTGTTCCTGACTGGCAACGACAACCAGTAATATtgtttaaatatgtttttgtaaagGAAAAAAAATTATATTACAGAAATCTAAcactatttaaaaaaacaattataCTAGCATAAACTAATTGAAGCTTACTGGAACGCTAAATTGAATACCAATGCAATAAAAGAAGCAATTAAACAA

Function

NR:

description
leucine-rich repeat protein soc-2 homolog

GO: NA

KEGG:

id description
K08127 EPYC, DSPG3; epiphycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957152.1 False 2519 mRNA 0.52 11 18630643 18654262
XM_036957153.1 True 2472 mRNA 0.52 10 18631073 18654262

Neighbor

gene id symbol gene type direction distance location
LOC110499893 LOC106576462 coding upstream 2232 18621177 ~ 18628411 (+)
LOC110499892 lum coding upstream 12839 18613683 ~ 18617804 (+)
LOC100301653 LOC100301653 coding upstream 33884 18567868 ~ 18596759 (+)
LOC110499888 LOC106609036 coding upstream 114610 18511675 ~ 18516033 (+)
LOC110499881 LOC106576460 coding upstream 256013 18366267 ~ 18374630 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 17651 18671875 ~ 18683306 (+)
fut9 fut9 coding downstream 65046 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 72435 18726697 ~ 18734052 (+)
LOC110499901 LOC106609586 coding downstream 86124 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 104197 18758459 ~ 18770532 (+)
G1713332 NA non-coding upstream 18014 18612387 ~ 18612629 (+)
G1713324 NA non-coding upstream 43976 18586072 ~ 18586667 (+)
G1713233 NA non-coding upstream 112275 18517739 ~ 18518368 (+)
G1713287 NA non-coding upstream 126323 18502266 ~ 18504320 (+)
G1713285 NA non-coding upstream 138630 18491635 ~ 18492013 (+)
G1713351 NA non-coding downstream 6093 18660355 ~ 18660684 (+)
G1713352 NA non-coding downstream 8910 18663172 ~ 18663507 (+)
G1713331 NA non-coding downstream 14709 18668971 ~ 18669328 (+)
G1713343 scyl2 non-coding downstream 29146 18683408 ~ 18686424 (+)
G1713262 NA other upstream 129769 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 363135 18247128 ~ 18268691 (+)
G1712658 NA other upstream 962057 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1686854 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1889425 16740369 ~ 16742407 (+)
G1713384 NA other downstream 80529 18734791 ~ 18737436 (+)
G1714090 NA other downstream 730710 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1454936 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1904160 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2344336 20954576 ~ 21004439 (+)

Expression


Co-expression Network