LOC110499900 (LOC106596632)


Basic Information

Item Value
gene id LOC110499900
gene name LOC106596632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18726697 ~ 18734052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576958.2
CTAAATAACTATGATAAAAGTAGACTCATACTTTGATAAACTTCCTGCCTGCATCAGACAACCAGGTGAAGAGGAAACGTAAATATCAGCCACACCTTTTTACCTAACCTGCCTGTCTCCGAGAGTAGCTCGGCACAAGGCGTTTGGCTGCGTCACTCAGTCAACTCACTGATCTCTACACCTGGATGGTATACGTAGACAGTGTGATACAATACTTCATCTTCTCCTGGCATTGTGGATACCAAGGGTCAAGCTATGTCCACTCCGGCTTCTCAGGGGGTTCTACGGCCTGTTCTGATTGGCTGTTTTTTTATAGCATGCTTCGTGGGAATATTCTTAATTTACTACAAACCCCAGATCAAGTTCCTTTCATGCCCTACTGACCAGGCATCCCACGAGGGGAAGGCTGGTTGTTCTCCTTGCCCTCAAGTAAGTATAGCAGGGAACCACACAGGGCAAAAAACACACCATGCACAGACAGCCATTCAGGCCGATGATGACGGAGACACAGACACTATCATTTTGATCTGGATGTGGCCATTTGGTCATGCCTTTGACATAGACTCTTGTGCCTACTTTAACATCAAAGGCTGTCACCTAACAGTGGATAAAAACCTTTACAGCAAGGCGCACGGTGTCATATTCCACCATAGAGACATCCATGGAGACCTGAAGAACATGCCCCAAGAGCAACGTCCATGGTTCCAGAAATGGGTGTGGTGGAATGCAGAATCACCGGCTAACACAAACAGGATCCCTGGTGTTGACCACTTGTTCAATTTGACTGCCAGTTATCGACTGGATTCTGACATCAAGGTTCCATATGGGTCGCTTGTCGAGGTAAGAAGTGAGGATAACATCTTTGAGCTGCCCAAGAAGGACAAATTAGTCTGCTGGGTAGTGAGCAACTGGAACCCAAACTACAAGAGGGTACAGGTGTTCAACGAGCTCAGTAGGCATGTCAAAATAGAGGCCTATGGGAGACATTTTAGTAGATACCTAGAAAACGAAGACTACTCAAAGACGCTGTCCAGCTGTAAATTCTACCTGGCATTTGAAAACTCCATCTACAAAGACTATGCTACAGAGAAGCTGTTCAACGCTATGAAGTTGGGAGCAGTGCCCGTTGTTCTAGGTCCATCCAGGGACAACTACGAGCAATTTATCCCAAGGGACTCTTTCATCCATGTGGATGACTTCTCCTCTACAGAGGAGCTGGCAAAGAAGCTTCTCTTTCTCGACCAGAACGAGGAAGAATACATGAGTTACTTCACCTGGCGAAAGAACTTTAAAGTCCAGGGATGGTGGTTTGGACTTGAGCACGCCTGTCGCTCATGTGATTACATTAGAAGAAATAAAGGATACAAAACTTTTCAGAATCTAAATAAATGGTTTTGGGGCTAAGTGACACATTTGTAGTGAGACATTTCCATGTAACAGGACCCATAAGCACCAACCTGTGAAGTTCAATCAATACAATGTTTTATAATGCCCTTTTTACATCTGCAGTTGTCACAACATGCTTCTACAGAAActgagcctaaaaccccaaagagcaagcaatatAGAAGCAcgctggctaggaaaaactccctagaaaggctggaacctaggaagaaacctagagaggaacctggCTTTGGTTGTGGCGGGAGGAGATACATGggcattaaggccagatcgttcttctaGATTTTCAAACATATATAGGCGACCAGTAGGGTCTAATTCTAATTATAGTGGTTATAGATGTACGGGACAATGTAGCGTGAAagggtcagggttccatagccgcagacagAACAGCAGAAAGTGGATGAGCAGCACAACAAGGTAGTCCGTCCGGTGCACAGGTCAGGGTTGCATAGCTGCAGGCAAACAGCAGGCACAGGTCAGGGTTGCATAGCTGCAGGCAAACAGCAGAAGCTGgatcagcagcacaaccaggtgtttcccaaccctggttctCAAGTACCCCCAGCAGTACACATTTTCATTGGagccctggacaaacacacctcattcaactcattgagggcttgatgattagttgacaatttgaatcaggtgtgcttgtccagggttacaataaaaatgtgtactgttgggggtactcgggGACCAGGGTCGGGAAACACTGACTTAAAACACCAAACCAAATCTATAtccattggagttgcttaccaatggATATAGATTACCAAgaaaacagtgaatgttcctgagtgaccaaGCTAcatttttgacttaaatctacttgaaaatctatggcaagccCTGCAAATGGTTGTCTAGaaataatcaacaaccaatttgacagagcttgaagaatgtttAAAAGAATAaatggcaaatgttgcacaatccaggtgtggaaagctcttaagcCTTGTTCACAATGCAGGCCTTAATGCTCTAATCTgttttggaatactgactgtccaaacagcaagttacaagtgaccaaatcaGATCTATgggtgttcagacagcagtcatttgccTATAAGGCtatgctagttgtcatagtaatgacaggtgtgtgtgtgtgagagcagtaGTGTAGGCTGATTGGTAGTAGTGCTTCCGTTCACTCAGAATTTGCATAGCAAGCTAAAgtgacaacaatgcctgccatggaCGTTTCCCAGTTGATTTGAATGTTTAAAATCAGAGTGGAAGAACACttttaaagcctcaaaggataagatgatccaacttgtcaaactgtcaactgagtagctagcaagcaacaagatatgccAAATAACAGTCTAAAAAGCACTTGAGGGTATATAAATCACAAGTCACATGTCCAGAAATCCGATGTTTATCTTttattgaaatatatatatatttcacctttatttaaccaggtaagctagttgagaacaagttctcatttacaactgctacctggccaagataaagca

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG:

id description
K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576958.2 True 2933 mRNA 0.44 2 18726697 18734052

Neighbor

gene id symbol gene type direction distance location
fut9 fut9 coding upstream 6105 18719308 ~ 18720592 (+)
si:ch211-244b2.3 LOC106609042 coding upstream 43391 18671875 ~ 18683306 (+)
LOC110499894 LOC106609040 coding upstream 72435 18630643 ~ 18654262 (+)
LOC110499893 LOC106576462 coding upstream 98286 18621177 ~ 18628411 (+)
LOC110499892 lum coding upstream 108893 18613683 ~ 18617804 (+)
LOC110499901 LOC106609586 coding downstream 6334 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 24407 18758459 ~ 18770532 (+)
LOC110499902 LOC106609566 coding downstream 36196 18770248 ~ 18840460 (+)
LOC110501017 LOC106609562 coding downstream 489385 19223437 ~ 19226634 (+)
LOC118942896 NA coding downstream 526693 19260745 ~ 19279035 (+)
G1713379 NA non-coding upstream 2239 18724053 ~ 18724458 (+)
G1713372 NA non-coding upstream 17596 18708772 ~ 18709101 (+)
G1713369 NA non-coding upstream 21276 18705155 ~ 18705421 (+)
G1713368 NA non-coding upstream 22249 18703644 ~ 18704448 (+)
G1713366 NA non-coding upstream 27560 18697279 ~ 18699137 (+)
G1713384 NA non-coding downstream 739 18734791 ~ 18737436 (+)
G1713385 NA non-coding downstream 3578 18737630 ~ 18738946 (+)
G1713386 NA non-coding downstream 5454 18739506 ~ 18740125 (+)
G1713421 NA non-coding downstream 90412 18824464 ~ 18825189 (+)
G1713808 NA non-coding downstream 121869 18855921 ~ 18856161 (+)
G1713262 NA other upstream 225823 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 459189 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1058111 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1782908 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1985479 16740369 ~ 16742407 (+)
G1714090 NA other downstream 650920 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1375146 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1824370 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2264546 20954576 ~ 21004439 (+)

Expression


Co-expression Network