LOC110501017 (LOC106609562)


Basic Information

Item Value
gene id LOC110501017
gene name LOC106609562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19223437 ~ 19226634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578520.2
GAGACGCCCCTTTTTTTGCATACCTCGACGCGAACGGAGTTCTAGGAAAGCCACATCGCGCTCACTGATACGCTAAATGTACAGTGAAGACAGTACACAGCATCTGTAGAGACCAGCCTCACACTTCCTCGGACCCCCTGTTAGAAAGCCACATCAGGCATGACTGCGAGACACAGAAACAAGAACAATTTAAGCGAAAAGACTGCTTCACCCACGCATGATGACGTGGCGAAGAAAAGTCCGAAACCTAGTAGTAATGGTAGCCCCTCAATCCAGGGATCGGGGTCAGGGAGTTGGGTCAAAGTTATAGCAGCTTTATGTTATATCGCATTAGTAGCCGCTGCGGGCTTTGCTGCTATTTATCTACAACAAGTGTTGAAAGAAGTCCATCAAATCAGCAGCAGAAATGAAGAGACCGTATGGGAAAATGCAGAGGTTGCGTACAAAGTAGAGAATGTTCTTCAACGGGTGGACAACGTGAGGGGTGCTGTAGACGGGTTGGAATCGGCACTGGGCATCATGCGGGCAGAGCAGGAGGTGGGGAGCCGGGCGGTGAGGAAGGGCGAGGTGGAGATACGGCGGGTGGAGGAGGCTCTTCAGAGGCTCCAGAACGAACTGCTGGTTGACCTGTCAGAAGGCATCAAGGAGGTGAAGGAGGCCAGAGAGCGGGACTTCTCTTCCCTGGAGAAGACGGTGGAGGAGCGCCTTGGTGAGTTGAGTGCCTCCATCGCGGCCAGCGTGACTGAGTTCACCGAGGCCCAGGGTGAGACTCAAAGTCAGCTGGCTGACCTCAAAGCCCGTCTGGATGACATGGAGGACCCGGAGCTAATCAGGCAGGAACTGTCCGCCATTGTCGACACCGTCGCCGGGCTCAGCGCCACTAAGCAGGCCACCGATGAGTCTGCCTATTCACTGAGGGAGCAGATAGCCGCGGTGGGGGTGGAGCTCCAGACCCGTAACCAGGAAATAGCCTCGATGTCGCAGGAAGTGGAGGTGGTGAGGTTGCTGGTGCAGGAGACGACGGGGAGCCTGCGGCAGCAGGTTTCGGGGGCAGAGGCAGGCATCCAGGCGTTGACCGATCAGGACCAGAGCCTGCAGAGCAGCCTGGAGCTGGCCACCGAagctcagcacagtctggagaaggAACTGCAGGGGGAATCGGCCAGGGCTGAGCAGAGGTCCGACGGTCTGGAGGTCAGACTAAAAGTGGTGGAGGAGGGCGGAGATTCCCTGGCCGCATCGCTAACAGACCTGACTTCCAAGTTTGAGGTTCTTCTTGCCAAGTACGATTCCCATGAGAGCACGCTCGCCGCTCAGGGCACGGCAGCCGAGAAGGCCCGGGCCActctacagggagagctagagGAGCTGAAGGGCAGTCTAGGGGAGCTCCAGTCCAACGTGGTTGCACTGAGTGGCGCTCAGACCAATCTGGCTTCCAGGGACTCTAGCCTGGGCCAGCAGATAGAGGGGCTGGAGCAGAAGCTGGaagtttccaagtcaaccagccaCCCCCCACCAGAGCTGGAGAAGCTGAAGAGCACCGTGGATGGCCTGGTGGGGAAAGCTGCCAAGCTGGAGAGCCATGAGAAGGCCATCGAAGCCTTACAGGGGTCACTACAGAAGACCATTAGCTCATTGGAGGCCTTGACCAAAGCCTCAGCCGAAGAGCAAGAAGGTGTAAGGGGAGCatagggagaaggaggaggagggggtagtgTTCAGGAGGGGTAGACTGGGTTGGGTCAATGAGAAATGGGGAACGTGGACTGCTGTGAATTTTAACACAACACTGCACtgtagttttttgtttgtttatttgtatttttcctCATTTGAGTTTTTGATTTAGTCAGATTCTGTTACGGGTGGTTTCACAAACCCAACTTGCAATATAAGCTCTTGTTCAGGAGCGTGTTATGGTTTACTGATTTGTGTTTTGTTACAAAAATTAAATTGGGCCACCACATTTCTGTGTAG

Function

NR:

description
cytoskeleton-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578520.2 True 1980 mRNA 0.55 2 19223437 19226634

Neighbor

gene id symbol gene type direction distance location
LOC110499902 LOC106609566 coding upstream 382977 18770248 ~ 18840460 (+)
LOC110499903 LOC106609567 coding upstream 452905 18758459 ~ 18770532 (+)
LOC110499901 LOC106609586 coding upstream 468792 18740386 ~ 18754645 (+)
LOC110499900 LOC106596632 coding upstream 489385 18726697 ~ 18734052 (+)
fut9 fut9 coding upstream 502845 18719308 ~ 18720592 (+)
LOC118942896 NA coding downstream 34111 19260745 ~ 19279035 (+)
bik LOC106609559 coding downstream 75734 19302368 ~ 19306083 (+)
LOC110499913 NA coding downstream 105330 19331964 ~ 19337651 (+)
LOC118942905 NA coding downstream 158358 19384992 ~ 19388072 (+)
LOC110499932 NA coding downstream 198759 19425393 ~ 19431499 (+)
G1713953 NA non-coding upstream 47268 19174107 ~ 19176169 (+)
G1713990 NA non-coding upstream 62629 19160285 ~ 19160808 (+)
G1713942 NA non-coding upstream 77302 19144945 ~ 19146135 (+)
G1713834 NA non-coding upstream 336236 18886535 ~ 18887201 (+)
G1713830 NA non-coding upstream 341779 18880801 ~ 18881658 (+)
G1714034 NA non-coding downstream 7491 19234125 ~ 19234357 (+)
G1714035 NA non-coding downstream 8204 19234838 ~ 19235054 (+)
G1714066 LOC106576374 non-coding downstream 74191 19300825 ~ 19302229 (+)
G1714074 NA non-coding downstream 94755 19321389 ~ 19321643 (+)
G1714087 NA non-coding downstream 114264 19340898 ~ 19341419 (+)
G1713384 NA other upstream 486001 18734791 ~ 18737436 (+)
G1713262 NA other upstream 722563 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 955929 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1554851 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 2279648 16914013 ~ 16973778 (+)
G1714090 NA other downstream 158338 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 882564 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1331788 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1771964 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2949329 22175963 ~ 22180897 (+)

Expression


Co-expression Network