LOC118942896


Basic Information

Item Value
gene id LOC118942896
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19260745 ~ 19279035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038545.1
GCTGACGACACGGAGACACGGAGAGAGGcatttctgacacacacaccccaaaacaCATACttgtacacatacacaccctgAATCCAGACATCCAGAAAACCTTTGGATATGAGGGTTTAAGACATAATCGACACACAACTTGTACACAAGTTAAATAGACCATATGAGCAGTGTGAGAAAAAACACATGACCAGTCTGAGGACATTGACGAGGCAACGCTGGGTACGTATGGTTTTTAGACATCCATCATGACACTAGGACACAGTCACAAAATAAACATGTTCAGTTAACAAATAAGAAATGGTCAGTTTTCCATTCACACAACATGTGTGATGCTTTTACTAGCATTTTATCAGTGTTTTCCCCAGCGGATACGCTCTGGGGTTGAGAAAACGGTCACACTCTTCACTTCCAATTTGATCCATATAATAGCCCATTTCCCTAGACATTCCAGTTAGATCTGAGAGGGTCAGATTGGTTTAAGCAATATGGTAATAGCTCCATTTCCCCCTCTGATTGGCTAGGTCAAAGCATTACCATATTAGTGACacctatctttaaaaaaaatatatattatctaGAGAAGTACCTTGGGTTAGAGGCTGGGGGTAGATTTGGAATTCCACACTATTCTGTTGTGAGAACGAATTATGATGAAGTCACCCTAGACATTGATCTACGGTCAGCTTTGTATTTCCCcccaatggttaaggttaggatttggggaaggtcagctgatcctagacctgtgctTAGAGACAACTTCAACCAGGAACCTACTGTAGTGTTGTATGTACATCGTATGTTTACAGTGCAGTTGGACCATGGCACGTAGTAGCCATCTTTCCAATCACAACGTCACTGCACTGTGGACACCTTTACTGACAGTCACGGCACCACGCTCTCTGAGATAACCAAATCTCTCTCAGAGGAGTtgaaacacaaaacaaacactgAACGGTGGCAACAATGTAACTGTGGTTGACAGAAGTCAGATAAAAAAAGACTGAGAAGACGTTCACACATCCTTAATGATGTTATATTAGGTCTCACACCAATATCAGCCTGCTTTTTGGTGATAGGCACAAGTGTTCTTTgtagatagatagagacagagagagacagagagatatatataaagaGCGTAATACTCAATAGTATTAGTTGCCCATAAACAACTTTTAAAGTGAGCAAATTATAAAATGCCCATATAGCAGTAAACTATCAATTTAAGGGGGATAGCTTGATAGATGTACTATCCCTTTAAGGGGGATAGCCAGATAGATGTACTATCCCTTTAAGGGGGATAGCCAGATAGATGTACTATCCCTTTAAGGGGGATAGCCAGATAGAACCACTACAAGGGATAGTACATTTATCTCTGATTTTGCTATAGCGCAGAAATGTGGACCAACTCTCAATGCGTGAACACGATAAGGAAGGAGTGAAGTTGTACCTCGGTACAGACCAGAATTTCACTCTGACCCCCTTTTCCTTATATGGCCATTGTTTGTTCAGTCTATTGCTTGTGCTTTCGTGAGCTGTGAAAATGAATTTCCACTGTAAGTACAACTAATCTTGATCGACACACACTCACCCTCACCCCTGTAGACACAGATATACCGTAGTGTATACAATACGTGTCTCTTATGCTGGTAGGGCGATGCAGACCCATGTTTGGCAATATGCACATCTGATGGATACCAAAAGGTCAAATGCCTTGCGTGCCTCACATTCCTCTCATTAACTACCCTCACACTACTCCAGCGCCCACTAACACACTCCCCCAGTacccaccttacacacacactcccccagtacccaccttacacacacacactcccccagtACCCACCCTACACACACCATGGGTCATGTTTGGCGTAAATTAACCAGTCTGCAACCTTTACAGCCAGTGGGGCACTTCTGTTTTCTCAGGGCTTGTTACAGGAATGTTTACCGTGACCATGGCAACAACTCAGTGGTGGAAGACGTCATTCCAAAGGCTTTTCTCCAGAATGCTTTACCAGCGTTCCCGAACAGCGTCAGAGAGCCTTGTTGTGGAGAAGCTGTCACTGGAGACGTCAACCATGGAGTCATCGTAGGAGCCGGACATGGCTGCTGCCCTCGGTACCCACAATCCTCAGGGGCTGAAACACACAGTCAACAACACCATAACACACAGCAGACTGGCTGTTCTACAGACTGGCTGCAGGGGACAGGACAGCACTGAGGTCTTCAAAAGTGCTATTTTTATTGCATTGAATAAAAGTTTTACTTTCTACCCTAGCTGGGTCTTTCCTta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038545.1 True 2305 mRNA 0.44 2 19260745 19279035

Neighbor

gene id symbol gene type direction distance location
LOC110501017 LOC106609562 coding upstream 34111 19223437 ~ 19226634 (+)
LOC110499902 LOC106609566 coding upstream 420285 18770248 ~ 18840460 (+)
LOC110499903 LOC106609567 coding upstream 490213 18758459 ~ 18770532 (+)
LOC110499901 LOC106609586 coding upstream 506100 18740386 ~ 18754645 (+)
LOC110499900 LOC106596632 coding upstream 526693 18726697 ~ 18734052 (+)
bik LOC106609559 coding downstream 23333 19302368 ~ 19306083 (+)
LOC110499913 NA coding downstream 52929 19331964 ~ 19337651 (+)
LOC118942905 NA coding downstream 105957 19384992 ~ 19388072 (+)
LOC110499932 NA coding downstream 146358 19425393 ~ 19431499 (+)
LOC118942906 NA coding downstream 430179 19709214 ~ 19709762 (+)
G1714035 NA non-coding upstream 25691 19234838 ~ 19235054 (+)
G1714034 NA non-coding upstream 26388 19234125 ~ 19234357 (+)
G1713953 NA non-coding upstream 84576 19174107 ~ 19176169 (+)
G1713990 NA non-coding upstream 99937 19160285 ~ 19160808 (+)
G1713942 NA non-coding upstream 114610 19144945 ~ 19146135 (+)
G1714066 LOC106576374 non-coding downstream 21790 19300825 ~ 19302229 (+)
G1714074 NA non-coding downstream 42354 19321389 ~ 19321643 (+)
G1714087 NA non-coding downstream 61863 19340898 ~ 19341419 (+)
G1714082 NA non-coding downstream 74845 19353880 ~ 19354892 (+)
G1714126 LOC106609549 non-coding downstream 81151 19360186 ~ 19360889 (+)
G1713384 NA other upstream 523309 18734791 ~ 18737436 (+)
G1713262 NA other upstream 759871 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 993237 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1592159 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 2316956 16914013 ~ 16973778 (+)
G1714090 NA other downstream 105937 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 830163 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1279387 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1719563 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2896928 22175963 ~ 22180897 (+)

Expression


Co-expression Network