LOC110499913


Basic Information

Item Value
gene id LOC110499913
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19331964 ~ 19337651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470041.2
tttatAAAAAATTATTTCAAAATAACCAATGAAAAACTGGTGTTTctaacagttttgttatatttcagtcttctgtgatgtatatgaagtgtaatattgagatgcaaactcaaaatggaatacatttcaactctatatctgacatggtacaggtgtctcctttttaagcccataaccatgtgtgaggTGCATACTATTGTTTCAAAGTAAATTTGTTAGACTGCAAATAATCACTTTGTGTGACCCTGATtaagcccactgcagtaaaaggttcaaATAAACAAATCTGGTTTCTCCTTTCACTACCGTTAGCTAGCGATAGCTAAAGTTAGCAAAAGTTTGTATAGCCCCTTTTTGTTTCAAGTTGAGTTACTTCCATTACAGATAAACCATGAAACCCCATTGTTGGTTTGTGAAAAAAATAAGGTGCATTGACACATGTTTGCTTATTCAACCATCTAACAAGAAGCTTGTAATGCAGCTATGGTGCAGCTATGCAAATCCCGATTTTTGCATTTAATGTCATCAATAGGACAAGATAACACAACAACTAAAGCTCAATTTGGTTATCTTTCCCTGTGAGTTACATTTACTGCACTTTCCAATGTGTTATAAGGAAATGAATGTCCAGTTTTAAGCTCTACAGTTACGTATGCCATGCCTGTTTTATAGTTTATCTGTCTTTATGACCAGGAAATATGAAGTTGTATCAGAATGTTTAGCAATTCACATGACTGACTCATTGTTTCTACCAAATTCCCCTGGTTTCTTGTTCCTGATGCTAAACGGACTTGGCCTACTTCCTGACTCACAGCCAGCATGTTTCAGTTCATGCTGTTCACTACTCTTCTGCTGGATTTATCCGCAGTGTCCAACACAGCTGTTCTAGTACGGGATGGATCCTCTGTGACTCTGCTCTGCAAAAACTCTGACATGAGTAATGCTTGCTGGAGCAGAACATGTAATTGGTTTTGGTGCGTTGAACCAATAATGGAGGTATCCGGACCTGACATTTTTGGCCCGACACACCCTGACAAATACAGCCTCAGAGGAGACCTGAGCATTGGTGAGCTAgacctcaccctttcaaatgtGAAGCCAGCAGACGATGGGACCTATTGCTGCATGACCAGTGCATCACCAAACCCAATGACCTACCGTCTGAAAATAGTTAATGGCAAGTGGTTTTAAGTCAATGTCCTTGAATCCTGGCCCAGGGAAAGTACTCCCTTTCTAAGTATGTGTTTGCCTTTATTGTTGCTTGTGTCACTGATCGTTGTAACAAACAGTACATTTACTATCAACTCACTGCGATACTTGACTTTTGTTCAACAGCAGCAAATGTCAGATTTTGGAATGTCGAATCATCACTAGAATTGACTTGCCTGGTCAAAATAATGACAATAGCTCATCACATTAATGACTTCAATGAAGCAATAACCCAGATTTGATTAAGTTTAGGCAAGGACTCAACTTGGTCAGGGTCGGGGCTATTGTTAATTAAGGGAGAAGTTACACGACCATTAGACCTGATCATGTGCTAACACCTGCTCAGCAGCCCTCTGGTGGACGAACTGTCATACTGCCTCCCGACGTATAACCACCTTGGTCAGACGTCCAATAGCGCAGTCTGAGGCATGCGACCTGGCTGACTTGCCTGAACTGTTTTATTTTGTCTTTGTCACGCAGGTTGTGTGAGGGAGCTCCTGAAAGATGTTTGTTTCATTTATAATGACATTAAGCACTTTGCAAGCCCAAATGCAAACCAATGTCAACAGAGCTGCACCCAACTTGATGCCTGTCAGTATTTCACATATATTCACAGTCGACAGGAGTGCTATCTGAAGGGCTCAGCTGGTGGCAGGGCAATGAATGTGATACACTTAGAAGACAGAGTTTCAGGCTACACCCTTAAAGACTGCGAGGAAAAAGGAAAGAAAACTGTAAGcacggtgaagatgtttctgaaaGTACCTCCAGGAGTTGACCTTAATGACGCTCTGGTGAAAGAGCAAATTCTCACACAGATACAGGCAGAGATCGCCCAGACAGATGGAGGTGCATCTGTGCGATGGAAGGAGCAGTCGGATGGAAAAGTCTTccagaagaaagagaaagaggagagaaagaaagaacgtAAGTCAAAAGACACAAGACATGACCACTTGAATGTTCCAAGTCTGTTAGTCCATTTGGTTGTTATTCTGGGTTAATACCTCAATATAATGCATCATAATAAAAATAGCAATACATGTTACATtacctctttgtgtgtgtgtgtgcataattaTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470041.2 True 2292 mRNA 0.41 5 19331964 19337651

Neighbor

gene id symbol gene type direction distance location
bik LOC106609559 coding upstream 25881 19302368 ~ 19306083 (+)
LOC118942896 NA coding upstream 52929 19260745 ~ 19279035 (+)
LOC110501017 LOC106609562 coding upstream 105330 19223437 ~ 19226634 (+)
LOC110499902 LOC106609566 coding upstream 491504 18770248 ~ 18840460 (+)
LOC110499903 LOC106609567 coding upstream 561432 18758459 ~ 18770532 (+)
LOC118942905 NA coding downstream 47341 19384992 ~ 19388072 (+)
LOC110499932 NA coding downstream 87742 19425393 ~ 19431499 (+)
LOC118942906 NA coding downstream 371563 19709214 ~ 19709762 (+)
LOC110499917 LOC106576387 coding downstream 404473 19742124 ~ 19752304 (+)
LOC110499934 LOC106576387 coding downstream 418258 19755909 ~ 19761293 (+)
G1714074 NA non-coding upstream 10321 19321389 ~ 19321643 (+)
G1714066 LOC106576374 non-coding upstream 29735 19300825 ~ 19302229 (+)
G1714035 NA non-coding upstream 96910 19234838 ~ 19235054 (+)
G1714034 NA non-coding upstream 97607 19234125 ~ 19234357 (+)
G1713953 NA non-coding upstream 155795 19174107 ~ 19176169 (+)
G1714087 NA non-coding downstream 3247 19340898 ~ 19341419 (+)
G1714082 NA non-coding downstream 16229 19353880 ~ 19354892 (+)
G1714126 LOC106609549 non-coding downstream 22535 19360186 ~ 19360889 (+)
G1714133 NA non-coding downstream 48798 19386449 ~ 19433764 (+)
G1714097 NA non-coding downstream 62386 19400037 ~ 19405559 (+)
G1713384 NA other upstream 594528 18734791 ~ 18737436 (+)
G1713262 NA other upstream 831090 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1064456 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1663378 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 2388175 16914013 ~ 16973778 (+)
G1714090 NA other downstream 47321 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 771547 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1220771 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1660947 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2838312 22175963 ~ 22180897 (+)

Expression


Co-expression Network