LOC110499916 (LOC106609549)



Basic Information


Item Value
gene id LOC110499916
gene name LOC106609549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19355510 ~ 19363151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110499916
cactttgaaAGCTCACTGTACAATAATACTTTCTTTGAGCATTGTAGCCCACTCCATCTGGCAATTAACATTCCCAATTTGGTTCAACCAAGGCAAAATAGACTAGAGGGATGTCACATGACCATAACGACAACATTCAAGTGAGTAAAATTGAGACTTTAATGACTTTCCATGTAGGCTGGTTTTGAATAGTGCACTAATAAACTCTACTCACTGTTTTGCACCATGATCCAGTCAGTGTGAGAGTTGCCATAGGCTAAATCTGTGAGTGGATTATAGAGTACTTGTTTTGTGCGGGGCACGACTAACTGGCCGACTCGACCTCTGTTGACCACTATAGTGGTCACTGTCGGCATGGACTCGGAGGGCTCTGCATCCTCATCTCTCGAGCGCCTACCTTTCAACAATGTCGCGCTAAAAAAACTTCCACTTGACTCCTCCGAAGAACCAGGGTCACGAACGGTGAGCGGAGCATGCTTCTCCCGCGTCCAGCCACAACCTCTTGTTAACCCCACTTTCGTGGCAGTATCCGGACCAGCACTCGCGCTGCTTGGGCTAGATGATAAGGAAATATTTCACGACTTGCTTGGTCCAGAATATTTGAGCGGTTCTAAAGTTTTACCGGGCTCGGAGCCGGCTGCGCATTGTTACTGCGGTCATCAGTTTGGACTATTTGCTGGACAGCTGGGAGATGGGGCGGTGTGTTACCTTGGCGAGGTGGAAGCACCTGCGGACCAAATCGGTACCATGCAGCGTGACAACCCATGCGGGCGATGGGAAATACAGGTGAAGGGTGCAGGTGTCACACCTTACTCCAGAGAGTCAGACGGACGGAAGGTCCTTCGTTCCAGCATCCGGGAGTTCCTGTGCAGCGAGGCCATGGCCGCTCTGGGCATCCCCACCACCCGTGCCGCGTCTCTGGTTACATCGGACCTCTATGTCAACAGAGACCCCCTCAACAATGGCCGGCGCCGCCCGGAGAGGTGTTCAGTGGTCCTGCGCATCGCCCCCTCCTTCATCAGGTTCGGGTCCTTTGAGATCTTTCAGTCTCGGGATGAGTTTTCAGGCCGACAGGGTCCCAGTCCAGGGCGCCACGACATTCGGGCTCAGCTAGTGGACTACGTCATCGACACCTTTTACCCTGACATCCAACGATGCCACGGCAACCGCAAAGAGAGGAACACAGCATTTTTCAAAGAGGTGACAGTGCGGACGGCTCGTCTGGTGGCCCAGTGGCAATGTGTTGGCTTCTGTCATGGTGTCCTCAACACAGACAACATGAGCATATTGGGACTTACTGTGGATTACGGCCCCTTTGGCTTCATAGACAGATTCGACCCAGAGTTTGTGTGCAACGCCTCGGACCGGAGGGGGCGCTACTCATACCAAGCCCAGCCGTCCGTGTGCCGTTGGAACCTGGCTCGTCTGGCTGAGGCCCTGGGCTCTGAGCTCCATGCATCCCAGGCAGGGGCCATCCTTGATGAGTTCATGCCCCTCTATGAGACCCTCTACCTGGCCAACATGAGGAGGAAGCTGGGCCTACTGAGGCGGAAGGAACCAGAGGACCAGGAGCTTGTCTCTGAGCTGCTGCAGCTCATGCACAACACAGGAGCAGACTTCACCAACACCTTCCGCTTGCTGAGTGGCGTGTCCTGCCCTGTGgtgggggaggggaagggggccACAGGGGGCCCGGTGGTGGACCTCCTCCTGGAGCAGTGTGTCTCCCTGGAGGAGCTTAAGGTGGCCAACAAGCCCACCATGGAGCCCCGTGAGCTGGCTATGGTCCTCTCTATGGCCCAGACCAACCCAGCCATGTTTGGCCTGGTGGCAGACCGACCAGAGGTGGCCCATCAGCTGGAGAAGATGGGCAGACTGAAGGAGCTGCTGAACACCAATCAGGACGAGCTGAGGGCAAAGCAGAGAGAGGATTGGCTACGCTGGATCAGTCAGTACAGGAAGAGGTTGGTGAAGGAGTGTGATGGAGCGAGGGAGGTGTGTAccatagaggaagagaggatcCGTGTGATGGACAGCACCAACCCACGCGTGGTGCTCCGCAACTACATTGCCCAGAATGCAATACAGGCTGCTGAAAATGGAGACTTCTCAGAGGTCCGCAGAGTTCTAAAAGTTCTAGAGAACCCCTACTGTGCATATCCTGAGTCAGAACTACCTGGTGGGCCTAAAACATTTGGAGAGAGGTACCagaaagggatggagaaagacaaagagggaAGGAAGGACGAGGGGAGGACAGATGGAAACCAAAATTGTGTCCCATATGACAGCAAGCCTCCTGTGTGGGCACGAGAGATCTGTGTCACCTGATCATCATAGTGCCTCCATGACCCCAAAACTCAactgacagtggagaaagatgtAGATGGTGTTCCTCAGGGCACTGTTCTAGGTCCATTCCGCTTTTCAAAGATGGAACCCTGCTCTTTGTTCTGAGTCAGTTGGGTTAATGTCAAGGGAGGTAGTTCAGAGTGCTCCTGGATGTCAATCAGTAGAATAAACTGATGGTGAATGAAGACTCAGGTAATCAGTCAGTGACCTGTCTGTGTTGGAGAGACCAGGAGCACCCTGGCTGTGtgtctatgcacacacacacacacacacttgagtttTGCATGTATTTAGATTATTTCACACACAGCATGTAGTGTATGCATGATTGAAGAGATACAATCAAATACTCATACATTCAGAAACATAATCATTGATCATCTTACTAACACCCACAAATAGTTTTTAACCACTGTTCTAAGATGAAGACCATCTACACACAACCTCTTGAATccataaataaaatgtatatctTAATAATACATCTTAATACAAGAGGCAAGGTTTCACACAATGTTATGCTCATGTATATTATGTGATGTGTTGAAAGTGGGAAAAAATGCTTTAAAAGGAGTTTGTTCTGAACTTCGATgtgcatttaaaaaatatgtgTGCAAATGTTTATGTACAGCAGGTTTGGAATTGCTTATTGATAACTTGCTGTACCATGTTACTCTGTCAAAAGAGCAAACATTAATAAACCTATCACTACTTTA

Function


NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K08997 SELENOO, selO; serine/tyrosine/threonine adenylyltransferase

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110499916 True 3068 mRNA 0.51 9 19355510 19363151

Neighbor


gene id symbol gene type direction distance location
LOC110499914 LOC106609550 coding downstream 779 19351820 ~ 19354731 (-)
LOC110501020 LOC106609550 coding downstream 7247 19337875 ~ 19348263 (-)
LOC110499911 LOC106576376 coding downstream 34627 19310298 ~ 19320883 (-)
mcat LOC106609558 coding downstream 45946 19307345 ~ 19309564 (-)
LOC110501019 LOC106576374 coding downstream 53259 19294271 ~ 19302251 (-)
LOC118942998 LOC106576333 coding upstream 30597 19393748 ~ 19396068 (-)
LOC118942907 NA coding upstream 322103 19684836 ~ 19700486 (-)
LOC110499938 LOC106609532 coding upstream 459100 19822222 ~ 19831727 (-)
LOC110499939 LOC106609539 coding upstream 470592 19833743 ~ 19842238 (-)
LOC110501023 LOC106576392 coding upstream 480740 19843806 ~ 19858976 (-)
G1714447 NA non-coding downstream 26122 19329163 ~ 19329388 (-)
G1714444 NA non-coding downstream 31806 19323477 ~ 19323704 (-)
LOC110501018 LOC106576372 non-coding downstream 94741 19256160 ~ 19294094 (-)
LOC110501016 LOC106609564 non-coding downstream 179357 19174093 ~ 19221344 (-)
G1714411 NA non-coding downstream 194702 19160231 ~ 19160808 (-)
G1714478 NA non-coding upstream 10710 19373861 ~ 19380347 (-)
G1714479 NA non-coding upstream 22030 19385181 ~ 19413462 (-)
G1714475 NA non-coding upstream 37184 19400335 ~ 19453678 (-)
G1714505 NA non-coding upstream 41838 19404989 ~ 19407829 (-)
G1714494 NA non-coding upstream 45517 19408668 ~ 19409411 (-)
G1713755 NA other downstream 589706 18765460 ~ 18766379 (-)
G1713719 NA other downstream 686185 18668834 ~ 18669325 (-)
G1713637 NA other downstream 749993 18519287 ~ 18605517 (-)
G1713604 NA other downstream 884693 18470513 ~ 18470817 (-)
G1712424 NA other downstream 2059775 17295519 ~ 17295735 (-)
G1714470 NA other upstream 241020 19599461 ~ 19617954 (-)
G1714755 NA other upstream 539634 19902785 ~ 19903457 (-)
G1715085 LOC106609522 other upstream 631520 19994671 ~ 19995602 (-)
G1715091 LOC106576402 other upstream 648159 20011310 ~ 20025695 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location